Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99987 * 2 1 4 4 C 1.53006 * 109.46974 * 125.00102 * 3 2 1 5 5 C 1.50696 * 109.46974 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00508 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99868 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00082 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46964 * 179.97438 * 8 7 5 10 10 H 1.09004 * 108.71182 * 306.75189 * 9 8 7 11 11 C 1.54172 * 108.74403 * 188.62800 * 9 8 7 12 12 N 1.48525 * 111.93782 * 197.82928 * 11 9 8 13 13 C 1.46897 * 110.99816 * 192.46622 * 12 11 9 14 14 C 1.50700 * 109.47159 * 194.17398 * 13 12 11 15 15 O 1.21293 * 119.99725 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00216 * 179.97438 * 14 13 12 17 17 C 1.37102 * 120.00136 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00158 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00123 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00118 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00012 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99991 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99481 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00088 * 21 19 17 25 25 C 1.44071 * 114.18381 * 318.84860 * 12 11 9 26 26 C 1.54011 * 108.26629 * 93.31153 * 25 12 11 27 27 C 1.46283 * 112.02730 * 280.50133 * 26 25 12 28 28 O 1.39990 * 108.74683 * 65.00083 * 9 8 7 29 29 H 1.08002 * 119.99846 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99972 * 0.02562 * 1 2 3 31 31 H 1.08008 * 119.99686 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47391 * 5.00140 * 3 2 1 33 33 H 1.09001 * 109.47164 * 244.99801 * 3 2 1 34 34 H 1.09004 * 109.46746 * 60.00127 * 4 3 2 35 35 H 1.09000 * 109.47158 * 300.00340 * 4 3 2 36 36 H 0.96998 * 119.99873 * 359.97438 * 7 5 4 37 37 H 1.09005 * 109.46910 * 59.99929 * 8 7 5 38 38 H 1.09000 * 109.47135 * 299.99990 * 8 7 5 39 39 H 1.09002 * 108.98691 * 77.19133 * 11 9 8 40 40 H 1.09002 * 108.98671 * 318.45993 * 11 9 8 41 41 H 1.09000 * 109.47527 * 74.17419 * 13 12 11 42 42 H 1.08998 * 109.47193 * 314.17154 * 13 12 11 43 43 H 0.97001 * 120.00302 * 0.02562 * 16 14 13 44 44 H 0.97006 * 119.99833 * 180.02562 * 20 19 17 45 45 H 1.09008 * 109.70010 * 213.00403 * 25 12 11 46 46 H 1.08997 * 109.70456 * 333.61320 * 25 12 11 47 47 H 1.09006 * 108.97284 * 41.15440 * 26 25 12 48 48 H 1.08997 * 108.97158 * 159.84056 * 26 25 12 49 49 H 1.09003 * 109.10697 * 180.14128 * 27 26 25 50 50 H 1.09005 * 109.10214 * 299.17628 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7890 2.6378 1.1813 6 8 3.5705 3.4643 0.3210 7 7 4.7062 2.8864 2.1371 8 6 5.4387 4.1551 2.1371 9 6 6.4103 4.1829 3.3186 10 1 5.8567 3.9647 4.2319 11 6 7.0111 5.5982 3.4328 12 7 8.2486 5.6111 4.2540 13 6 8.6386 6.9853 4.5968 14 6 10.0530 6.9912 5.1168 15 8 10.6748 5.9527 5.1947 16 7 10.6270 8.1503 5.4954 17 6 11.9136 8.1556 5.9690 18 1 12.4673 7.2309 6.0384 19 6 12.5055 9.3507 6.3588 20 7 13.7389 9.3558 6.8123 21 14 11.5482 10.9502 6.2381 22 1 11.7726 11.5619 4.9037 23 1 10.1001 10.6753 6.4193 24 1 12.0106 11.8849 7.2953 25 6 8.1841 4.7837 5.4317 26 6 8.7610 3.3994 5.0812 27 6 7.7936 2.5668 4.3665 28 8 7.3769 3.1881 3.1298 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5064 1.0920 35 1 2.4773 1.2354 2.1130 36 1 4.8807 2.2256 2.8253 37 1 4.7338 4.9817 2.2272 38 1 5.9961 4.2528 1.2055 39 1 6.2753 6.2600 3.8896 40 1 7.2447 5.9660 2.4336 41 1 7.9679 7.3728 5.3637 42 1 8.5756 7.6132 3.7081 43 1 10.1296 8.9808 5.4334 44 1 14.1520 10.1902 7.0847 45 1 8.7721 5.2354 6.2307 46 1 7.1473 4.6797 5.7514 47 1 9.6445 3.5314 4.4565 48 1 9.0522 2.8935 6.0016 49 1 8.2485 1.6013 4.1451 50 1 6.9200 2.4115 4.9998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149329538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = -113.299865 kcal Electronic energy + Delta-G solvation = -29387.780789 eV Core-core repulsion = 25221.791047 eV Total energy + Delta-G solvation = -4165.989742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25938 -40.61555 -39.87776 -37.20992 -36.40964 -35.87563 -35.82598 -33.92210 -33.68644 -31.93347 -31.04235 -28.74539 -27.54325 -26.53447 -25.26064 -23.81897 -22.52686 -21.73886 -21.19416 -21.00344 -20.63181 -20.18106 -18.26108 -18.00666 -17.69418 -17.24758 -17.01525 -16.72024 -16.61175 -16.39522 -15.78684 -15.70093 -15.47507 -15.31180 -14.86788 -14.80466 -14.53765 -14.52973 -14.27065 -14.01096 -13.89434 -13.70995 -13.45027 -13.32072 -13.15828 -12.96957 -12.85488 -12.41249 -12.26672 -11.98202 -11.97741 -11.92030 -11.87119 -11.73307 -11.50176 -11.43107 -10.97844 -10.56703 -10.31721 -10.21277 -10.19489 -10.08400 -9.04618 -8.40196 -6.00322 1.29604 1.35642 1.41672 1.43832 1.68045 1.99364 2.17293 2.23314 2.60304 2.78148 3.16100 3.23459 3.74219 3.88869 3.93407 3.99390 4.00476 4.02984 4.05808 4.21187 4.25554 4.35358 4.42642 4.43168 4.44235 4.48653 4.50667 4.57262 4.67185 4.71474 4.73286 4.79455 4.95103 4.96651 5.04849 5.11021 5.19420 5.24146 5.43942 5.49490 5.54547 5.78855 5.91518 5.93134 6.05553 6.33865 6.40048 6.57120 6.61935 6.90801 7.28385 7.42498 8.00345 8.77552 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.001794 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.391179 B =15602.718096 C =16296.279007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.080 4.080 4 C -0.127 4.127 5 C 0.507 3.493 6 O -0.590 6.590 7 N -0.715 5.715 8 C 0.126 3.874 9 C 0.090 3.910 10 H 0.082 0.918 11 C 0.041 3.959 12 N -0.549 5.549 13 C 0.059 3.941 14 C 0.451 3.549 15 O -0.599 6.599 16 N -0.595 5.595 17 C -0.325 4.325 18 H 0.055 0.945 19 C -0.015 4.015 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.259 1.259 23 H -0.231 1.231 24 H -0.276 1.276 25 C 0.077 3.923 26 C -0.142 4.142 27 C 0.070 3.930 28 O -0.375 6.375 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.415 0.585 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.388 0.612 44 H 0.278 0.722 45 H 0.045 0.955 46 H 0.058 0.942 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.100 0.900 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.944 -14.874 -7.079 33.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C -0.118 4.118 4 C -0.166 4.166 5 C 0.295 3.705 6 O -0.471 6.471 7 N -0.367 5.367 8 C 0.002 3.998 9 C 0.030 3.970 10 H 0.099 0.901 11 C -0.086 4.086 12 N -0.275 5.275 13 C -0.072 4.072 14 C 0.238 3.762 15 O -0.482 6.482 16 N -0.238 5.238 17 C -0.454 4.454 18 H 0.073 0.927 19 C -0.213 4.213 20 N -0.577 5.577 21 Si 0.784 3.216 22 H -0.184 1.184 23 H -0.155 1.155 24 H -0.201 1.201 25 C -0.052 4.052 26 C -0.181 4.181 27 C -0.006 4.006 28 O -0.293 6.293 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.132 0.868 43 H 0.223 0.777 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.083 -15.144 -7.998 32.893 hybrid contribution 0.244 1.368 1.110 1.778 sum -27.838 -13.776 -6.888 31.815 Atomic orbital electron populations 1.24042 0.96130 1.02423 1.00721 1.23003 0.96154 0.98175 1.00241 1.20455 0.97695 0.95726 0.97877 1.21637 0.99061 0.94130 1.01794 1.21347 0.79369 0.89625 0.80123 1.90702 1.67422 1.50006 1.38953 1.45827 1.39841 1.19992 1.31001 1.21363 0.93269 0.87083 0.98119 1.21992 0.88716 0.88156 0.98108 0.90052 1.23121 0.89593 0.97456 0.98471 1.59966 1.34999 1.08927 1.23611 1.21786 0.91797 0.91563 1.02063 1.20908 0.90154 0.83341 0.81789 1.90547 1.66255 1.33095 1.58338 1.42047 1.13190 1.08698 1.59819 1.18985 0.89638 0.95834 1.40930 0.92688 1.26076 0.96886 1.02440 0.95944 1.69809 1.14747 1.29360 1.43806 0.85380 0.79891 0.77087 0.79244 1.18402 1.15458 1.20087 1.21596 0.98793 0.93895 0.90871 1.21059 1.00328 0.95904 1.00794 1.21749 0.97930 0.95694 0.85211 1.87849 1.59273 1.51160 1.31035 0.87226 0.88901 0.85788 0.92256 0.91805 0.86459 0.86445 0.74844 0.89618 0.92421 0.91216 0.90382 0.90311 0.86781 0.77666 0.91254 0.93603 0.92383 0.93690 0.90686 0.88214 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 14.32 67.78 0.97 -0.86 16 2 C -0.16 -1.50 9.52 25.64 0.24 -1.26 16 3 C -0.08 -1.02 4.95 29.85 0.15 -0.87 16 4 C -0.13 -1.19 5.68 29.85 0.17 -1.02 16 5 C 0.51 8.66 7.83 87.66 0.69 9.34 16 6 O -0.59 -15.73 15.98 -3.04 -0.05 -15.78 16 7 N -0.71 -9.76 5.48 -463.05 -2.54 -12.30 16 8 C 0.13 2.13 5.18 86.38 0.45 2.57 16 9 C 0.09 1.53 2.00 30.99 0.06 1.59 16 10 H 0.08 1.02 6.57 -2.39 -0.02 1.01 16 11 C 0.04 0.83 5.18 86.39 0.45 1.28 16 12 N -0.55 -16.02 3.90 -899.20 -3.51 -19.52 16 13 C 0.06 1.79 5.34 85.56 0.46 2.25 16 14 C 0.45 20.19 7.14 87.66 0.63 20.81 16 15 O -0.60 -32.56 14.47 -3.07 -0.04 -32.61 16 16 N -0.60 -28.02 5.09 -306.98 -1.56 -29.58 16 17 C -0.32 -19.03 10.16 84.04 0.85 -18.18 16 18 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 19 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 20 N -0.94 -56.71 13.96 21.66 0.30 -56.41 16 21 Si 0.96 38.97 27.74 68.60 1.90 40.87 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.23 -7.82 6.52 99.48 0.65 -7.18 16 24 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 25 C 0.08 2.16 4.48 87.17 0.39 2.55 16 26 C -0.14 -3.87 5.62 28.87 0.16 -3.71 16 27 C 0.07 1.30 6.21 69.91 0.43 1.73 16 28 O -0.37 -8.14 10.00 -140.64 -1.41 -9.55 16 29 H 0.11 0.73 8.06 -2.91 -0.02 0.71 16 30 H 0.09 0.91 7.84 -2.91 -0.02 0.89 16 31 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.06 0.92 7.75 -2.39 -0.02 0.91 16 33 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.41 3.38 8.45 -92.71 -0.78 2.60 16 37 H 0.09 1.35 8.12 -2.38 -0.02 1.34 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.07 8.04 -2.39 -0.02 1.06 16 40 H 0.08 1.67 7.98 -2.39 -0.02 1.65 16 41 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 42 H 0.11 2.93 8.03 -2.39 -0.02 2.91 16 43 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16 44 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 45 H 0.05 1.62 6.26 -2.38 -0.01 1.60 16 46 H 0.06 1.21 6.89 -2.39 -0.02 1.20 16 47 H 0.04 1.66 8.11 -2.38 -0.02 1.64 16 48 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.08 0.93 7.47 -2.38 -0.02 0.92 16 Total: -1.00 -84.01 402.46 -0.77 -84.78 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.43 Total: 34.25 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.57 Total: 15.86 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -7.30 Total: -117.81 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -1.50 Total: -57.94 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.87 kcal Total: -84.01 -0.77 -84.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149329538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.524 kcal (2) G-P(sol) polarization free energy of solvation -84.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds