Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32999 * 119.99549 * 2 1 4 4 C 1.50698 * 120.00117 * 0.02562 * 3 2 1 5 5 C 1.47105 * 119.99891 * 179.97438 * 3 2 1 6 6 O 1.21617 * 119.99928 * 0.02562 * 5 3 2 7 7 N 1.34771 * 119.99961 * 180.02562 * 5 3 2 8 8 C 1.46505 * 119.99941 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.47192 * 180.02562 * 8 7 5 10 10 H 1.08997 * 108.98203 * 58.84990 * 9 8 7 11 11 C 1.50735 * 108.93408 * 177.66652 * 9 8 7 12 12 N 1.47601 * 108.45310 * 213.94872 * 11 9 8 13 13 C 1.46904 * 110.99753 * 152.98686 * 12 11 9 14 14 C 1.50695 * 109.46798 * 194.49602 * 13 12 11 15 15 O 1.21288 * 120.00231 * 0.27184 * 14 13 12 16 16 N 1.34784 * 119.99635 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99504 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00446 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99366 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00272 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99631 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47225 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47174 * 119.99925 * 21 19 17 24 24 H 1.48506 * 109.46866 * 239.99515 * 21 19 17 25 25 C 1.40459 * 114.43030 * 279.56638 * 12 11 9 26 26 C 1.54396 * 111.45194 * 61.24527 * 25 12 11 27 27 C 1.50727 * 109.13080 * 284.57333 * 26 25 12 28 28 O 1.43936 * 108.99509 * 299.99928 * 9 8 7 29 29 H 1.09002 * 109.47211 * 299.99596 * 1 2 3 30 30 H 1.08999 * 109.47623 * 60.00088 * 1 2 3 31 31 H 1.09003 * 109.46813 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00487 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46932 * 269.99380 * 4 3 2 34 34 H 1.08998 * 109.47348 * 29.99578 * 4 3 2 35 35 H 1.09000 * 109.47237 * 149.99822 * 4 3 2 36 36 H 0.96997 * 120.00416 * 0.02562 * 7 5 3 37 37 H 1.09002 * 109.46987 * 60.00189 * 8 7 5 38 38 H 1.08998 * 109.46815 * 300.00133 * 8 7 5 39 39 H 1.08994 * 109.63522 * 94.25991 * 11 9 8 40 40 H 1.08997 * 109.63933 * 333.63816 * 11 9 8 41 41 H 1.09005 * 109.47078 * 74.49484 * 13 12 11 42 42 H 1.09002 * 109.47005 * 314.49699 * 13 12 11 43 43 H 0.96999 * 120.00044 * 0.02562 * 16 14 13 44 44 H 0.97000 * 119.99725 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.08709 * 181.75281 * 25 12 11 46 46 H 1.09001 * 109.08220 * 300.74690 * 25 12 11 47 47 H 1.09002 * 109.52372 * 44.46074 * 26 25 12 48 48 H 1.08990 * 109.53079 * 164.67358 * 26 25 12 49 49 H 1.09006 * 108.80053 * 212.38735 * 27 26 25 50 50 H 1.08995 * 108.81139 * 330.64765 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4183 2.4569 0.0006 5 6 3.6429 1.1519 0.0006 6 8 4.2511 0.0987 0.0006 7 7 4.3167 2.3191 0.0011 8 6 5.7818 2.3192 0.0011 9 6 6.2917 3.7618 0.0024 10 1 5.9072 4.2729 0.8849 11 6 7.7979 3.7480 0.0604 12 7 8.2458 4.9150 0.8454 13 6 9.5458 4.6558 1.4787 14 6 9.8046 5.6959 2.5381 15 8 8.9845 6.5643 2.7485 16 7 10.9452 5.6580 3.2551 17 6 11.1809 6.6045 4.2185 18 1 10.4525 7.3802 4.4032 19 6 12.3571 6.5658 4.9573 20 7 13.2433 5.6217 4.7330 21 14 12.6780 7.8550 6.2705 22 1 11.5338 8.7998 6.3267 23 1 12.8366 7.1900 7.5887 24 1 13.9191 8.6003 5.9396 25 6 8.2667 6.1233 0.1295 26 6 6.8587 6.5038 -0.3771 27 6 6.5061 5.6336 -1.5563 28 8 5.8063 4.4313 -1.1757 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.0470 -0.9352 -0.0004 33 1 1.2363 2.7718 -1.0269 34 1 0.4661 2.3264 0.5147 35 1 2.0075 3.2165 0.5144 36 1 3.8317 3.1592 0.0015 37 1 6.1451 1.8058 -0.8892 38 1 6.1451 1.8050 0.8908 39 1 8.2039 3.8080 -0.9493 40 1 8.1376 2.8308 0.5413 41 1 10.3323 4.7009 0.7254 42 1 9.5364 3.6662 1.9356 43 1 11.5997 4.9616 3.0889 44 1 14.0641 5.5945 5.2490 45 1 8.6380 6.9160 0.7789 46 1 8.9366 6.0202 -0.7241 47 1 6.1310 6.3500 0.4196 48 1 6.8515 7.5503 -0.6816 49 1 5.8772 6.2051 -2.2390 50 1 7.4235 5.3568 -2.0756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149482146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -119.034817 kcal Electronic energy + Delta-G solvation = -29730.100751 eV Core-core repulsion = 25563.862323 eV Total energy + Delta-G solvation = -4166.238428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37179 -40.75105 -39.76078 -37.31108 -36.49461 -36.02478 -35.83072 -33.66022 -33.25112 -31.60382 -30.18491 -28.52300 -27.75390 -27.01134 -26.40172 -24.67761 -22.61817 -22.08181 -21.55727 -20.96715 -19.91031 -19.52595 -18.35510 -18.03892 -17.81152 -17.25094 -17.05356 -16.59176 -16.42662 -16.22081 -15.91818 -15.85073 -15.29407 -15.22772 -15.00023 -14.66186 -14.37334 -14.34768 -14.04438 -13.96061 -13.58212 -13.48147 -13.36192 -13.34802 -13.20197 -13.06435 -12.80984 -12.73769 -12.49431 -12.40539 -12.19761 -12.14449 -12.12947 -12.01279 -11.60395 -11.34647 -10.98449 -10.54904 -10.26166 -10.24098 -9.99766 -9.86253 -9.17522 -8.46894 -5.95256 0.40492 1.35867 1.41350 1.55165 2.04905 2.13619 2.26134 2.28659 2.57271 2.74482 3.20112 3.37721 3.66668 3.77196 3.85398 3.93688 4.01387 4.02102 4.13464 4.31429 4.32220 4.37758 4.38045 4.42652 4.47606 4.48879 4.53332 4.60396 4.65349 4.74665 4.76377 4.86103 4.91742 4.95789 5.06460 5.08377 5.13565 5.17979 5.28007 5.36221 5.41086 5.52583 5.67404 5.86200 6.06518 6.11025 6.44659 6.54367 6.60374 7.13032 7.20048 7.56592 8.11934 8.70601 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002052 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.271096 B =13643.232085 C =14331.677509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.207 4.207 4 C -0.114 4.114 5 C 0.543 3.457 6 O -0.595 6.595 7 N -0.709 5.709 8 C 0.132 3.868 9 C 0.095 3.905 10 H 0.071 0.929 11 C 0.037 3.963 12 N -0.544 5.544 13 C 0.062 3.938 14 C 0.441 3.559 15 O -0.612 6.612 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.992 3.008 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.271 1.271 25 C 0.062 3.938 26 C -0.142 4.142 27 C 0.067 3.933 28 O -0.394 6.394 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.414 0.586 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.065 0.935 46 H 0.023 0.977 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.110 0.890 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.847 -6.931 -14.038 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.209 4.209 4 C -0.170 4.170 5 C 0.334 3.666 6 O -0.478 6.478 7 N -0.360 5.360 8 C 0.007 3.993 9 C 0.037 3.963 10 H 0.089 0.911 11 C -0.091 4.091 12 N -0.268 5.268 13 C -0.069 4.069 14 C 0.228 3.772 15 O -0.498 6.498 16 N -0.212 5.212 17 C -0.459 4.459 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.068 4.068 26 C -0.180 4.180 27 C -0.009 4.009 28 O -0.315 6.315 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.252 0.748 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.128 0.872 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.228 -7.078 -13.588 26.180 hybrid contribution 1.811 0.588 0.321 1.930 sum -19.417 -6.491 -13.267 24.396 Atomic orbital electron populations 1.21045 0.89418 1.04114 1.03726 1.23786 0.98139 0.96912 0.90303 1.21518 0.90991 0.98631 1.09809 1.20856 1.00411 0.92275 1.03465 1.18983 0.89236 0.83121 0.75290 1.90751 1.71311 1.32761 1.53000 1.45777 1.07111 1.09085 1.74024 1.21432 0.80334 0.94805 1.02725 1.21963 0.93442 0.91790 0.89103 0.91115 1.22399 0.95206 0.93815 0.97640 1.58539 1.28533 1.03187 1.36556 1.21744 0.90946 0.98597 0.95582 1.20766 0.82410 0.88370 0.85631 1.90461 1.47187 1.40893 1.71275 1.41951 1.18162 1.28029 1.33072 1.19680 1.04169 1.08382 1.13686 0.90257 1.26030 0.94945 0.99861 1.00552 1.69678 1.10046 1.34012 1.42470 0.84881 0.78170 0.77747 0.77606 1.19751 1.19758 1.19669 1.21284 0.97363 0.92367 0.95739 1.21974 0.96118 1.01216 0.98670 1.22457 0.97727 0.84887 0.95852 1.88218 1.58202 1.39690 1.45353 0.89321 0.89377 0.90535 0.87543 0.89894 0.89171 0.91591 0.74795 0.91156 0.90122 0.91999 0.87783 0.91362 0.86966 0.77066 0.91371 0.91641 0.95947 0.91270 0.88778 0.87178 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 8.91 71.24 0.63 -0.37 16 2 C -0.07 -1.13 9.84 24.52 0.24 -0.89 16 3 C -0.21 -3.64 6.00 -18.70 -0.11 -3.75 16 4 C -0.11 -1.22 9.14 71.24 0.65 -0.57 16 5 C 0.54 13.39 7.75 86.57 0.67 14.06 16 6 O -0.60 -19.41 16.22 -4.08 -0.07 -19.47 16 7 N -0.71 -15.01 5.39 -466.70 -2.51 -17.52 16 8 C 0.13 2.89 5.12 86.38 0.44 3.34 16 9 C 0.10 2.11 2.33 29.86 0.07 2.18 16 10 H 0.07 1.81 7.26 -2.39 -0.02 1.79 16 11 C 0.04 0.84 4.86 85.43 0.42 1.26 16 12 N -0.54 -16.54 3.79 -916.56 -3.48 -20.02 16 13 C 0.06 2.06 5.45 85.55 0.47 2.52 16 14 C 0.44 20.45 7.40 87.65 0.65 21.10 16 15 O -0.61 -32.76 13.92 -3.05 -0.04 -32.80 16 16 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 17 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 20 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 21 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C 0.06 1.87 4.64 87.94 0.41 2.28 16 26 C -0.14 -3.39 5.67 30.33 0.17 -3.21 16 27 C 0.07 1.29 6.26 71.24 0.45 1.74 16 28 O -0.39 -8.51 10.27 -148.98 -1.53 -10.04 16 29 H 0.09 0.53 7.40 -2.39 -0.02 0.51 16 30 H 0.09 0.51 8.10 -2.39 -0.02 0.49 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 2.07 7.49 -2.91 -0.02 2.04 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.65 6.49 -2.39 -0.02 0.64 16 35 H 0.07 0.69 6.70 -2.39 -0.02 0.68 16 36 H 0.41 7.22 6.44 -92.71 -0.60 6.63 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.85 8.03 -2.39 -0.02 1.83 16 39 H 0.06 1.33 6.85 -2.39 -0.02 1.31 16 40 H 0.10 2.12 7.08 -2.39 -0.02 2.10 16 41 H 0.07 2.04 8.11 -2.38 -0.02 2.02 16 42 H 0.11 3.26 7.68 -2.39 -0.02 3.24 16 43 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.07 2.58 5.57 -2.39 -0.01 2.56 16 46 H 0.02 0.63 7.63 -2.39 -0.02 0.61 16 47 H 0.07 1.87 7.25 -2.39 -0.02 1.86 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.05 0.96 6.61 -2.39 -0.02 0.95 16 Total: -1.00 -72.88 396.12 -0.87 -73.74 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: -0.36 Total: 39.57 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.43 Total: 21.68 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -7.33 Total: -117.49 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -1.64 Total: -62.32 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -72.88 -0.87 -73.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149482146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.293 kcal (2) G-P(sol) polarization free energy of solvation -72.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds