Wall clock time and date at job start Sat Apr 11 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47575 * 2 1 4 4 C 1.50702 * 110.43112 * 56.59168 * 3 2 1 5 5 O 1.21278 * 120.00123 * 251.83724 * 4 3 2 6 6 N 1.34775 * 119.99591 * 71.84254 * 4 3 2 7 7 C 1.47508 * 118.76138 * 356.81479 * 6 4 3 8 8 C 1.53567 * 111.03248 * 221.60858 * 7 6 4 9 9 C 1.51543 * 109.58054 * 39.97410 * 8 7 6 10 10 O 1.42152 * 108.75341 * 268.60327 * 9 8 7 11 11 C 1.38013 * 119.44573 * 87.22814 * 10 9 8 12 12 H 1.09003 * 109.46814 * 56.57224 * 11 10 9 13 13 C 1.53000 * 109.47179 * 176.56776 * 11 10 9 14 14 N 1.46498 * 109.47131 * 300.00841 * 13 11 10 15 15 C 1.36936 * 119.99917 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99922 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99979 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00031 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47240 * 90.00189 * 19 17 15 21 21 H 1.48500 * 109.47251 * 209.99825 * 19 17 15 22 22 H 1.48500 * 109.47169 * 329.99776 * 19 17 15 23 23 C 1.45119 * 118.75677 * 176.79049 * 6 4 3 24 24 C 1.54628 * 110.49017 * 179.13727 * 3 2 1 25 25 C 1.54826 * 101.60566 * 143.56920 * 24 3 2 26 26 N 1.46768 * 105.49422 * 334.56954 * 25 24 3 27 27 C 1.34419 * 111.30229 * 17.03657 * 26 25 24 28 28 O 1.21278 * 124.94427 * 179.63175 * 27 26 25 29 29 H 1.08994 * 109.47067 * 186.23099 * 1 2 3 30 30 H 1.09000 * 109.47037 * 306.23413 * 1 2 3 31 31 H 1.09007 * 109.47141 * 66.23335 * 1 2 3 32 32 H 1.09006 * 109.47351 * 239.99790 * 2 1 3 33 33 H 1.09004 * 109.47045 * 120.00069 * 2 1 3 34 34 H 1.09007 * 109.16302 * 342.00668 * 7 6 4 35 35 H 1.09001 * 109.17282 * 101.20565 * 7 6 4 36 36 H 1.09004 * 109.45800 * 160.00495 * 8 7 6 37 37 H 1.08996 * 109.45649 * 279.94684 * 8 7 6 38 38 H 1.09000 * 109.58905 * 28.37762 * 9 8 7 39 39 H 1.08998 * 109.59292 * 148.82119 * 9 8 7 40 40 H 1.09003 * 109.47070 * 60.01009 * 13 11 10 41 41 H 1.09009 * 109.46921 * 180.02562 * 13 11 10 42 42 H 0.96994 * 119.99775 * 0.02562 * 14 13 11 43 43 H 0.97002 * 120.00592 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.46245 * 330.71611 * 23 6 4 45 45 H 1.08999 * 109.45188 * 210.75389 * 23 6 4 46 46 H 1.09001 * 110.96691 * 261.73099 * 24 3 2 47 47 H 1.08997 * 110.96769 * 25.48631 * 24 3 2 48 48 H 1.08993 * 110.22068 * 215.56877 * 25 24 3 49 49 H 1.08996 * 110.25301 * 93.58032 * 25 24 3 50 50 H 0.96999 * 124.35079 * 197.05627 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4824 2.1977 1.1789 5 8 0.6342 3.0476 1.0084 6 7 1.9264 1.9286 2.4226 7 6 2.9060 0.8413 2.6068 8 6 2.5726 0.0038 3.8500 9 6 1.0730 -0.1936 3.9422 10 8 0.5214 0.8548 4.7280 11 6 0.1631 2.0413 4.1208 12 1 -0.5495 1.8394 3.3211 13 6 -0.4791 2.9693 5.1539 14 7 -1.6712 2.3271 5.7129 15 6 -2.4149 2.9734 6.6639 16 1 -2.1227 3.9568 7.0015 17 6 -3.5442 2.3647 7.1939 18 7 -4.2587 2.9858 8.1083 19 14 -4.0499 0.6642 6.6093 20 1 -3.4002 -0.3652 7.4599 21 1 -5.5254 0.5262 6.7054 22 1 -3.6264 0.4796 5.1981 23 6 1.4229 2.7199 3.5301 24 6 3.5860 1.4699 0.0218 25 6 3.8886 2.6909 -0.8808 26 7 2.7262 2.8208 -1.7673 27 6 1.6719 2.1342 -1.2941 28 8 0.5841 2.0770 -1.8273 29 1 -0.3633 -1.0215 0.1115 30 1 -0.3633 0.6074 0.8289 31 1 -0.3634 0.4142 -0.9406 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8949 0.1969 1.7276 35 1 3.9010 1.2715 2.7214 36 1 3.0626 -0.9671 3.7759 37 1 2.9260 0.5213 4.7419 38 1 0.6389 -0.1683 2.9427 39 1 0.8588 -1.1537 4.4118 40 1 0.2336 3.1712 5.9536 41 1 -0.7625 3.9062 4.6742 42 1 -1.9334 1.4438 5.4099 43 1 -5.0477 2.5603 8.4790 44 1 1.1654 3.7180 3.1757 45 1 2.1900 2.7950 4.3008 46 1 3.9590 1.6282 1.0337 47 1 3.9983 0.5560 -0.4058 48 1 4.7909 2.5127 -1.4655 49 1 4.0026 3.5894 -0.2743 50 1 2.7196 3.3357 -2.5894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200720794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:40 Heat of formation + Delta-G solvation = -69.893690 kcal Electronic energy + Delta-G solvation = -32464.756970 eV Core-core repulsion = 28300.649461 eV Total energy + Delta-G solvation = -4164.107509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04968 -39.98151 -38.34478 -36.87381 -35.92681 -34.76119 -34.59816 -32.89307 -31.15059 -30.65098 -29.19504 -27.79158 -26.92971 -25.46241 -23.40809 -23.16651 -22.51856 -21.58558 -21.05260 -20.94906 -19.06737 -17.80424 -17.65868 -17.39399 -16.61773 -16.58268 -16.33060 -15.86173 -15.34141 -14.99670 -14.74541 -14.45661 -14.31185 -14.15361 -13.84650 -13.78678 -13.56148 -13.43455 -13.28595 -13.03989 -12.75003 -12.61293 -12.38571 -12.22292 -12.07301 -11.94436 -11.86884 -11.63397 -11.29735 -11.19649 -11.12618 -10.86881 -10.78785 -10.34236 -10.07303 -10.00575 -9.76504 -9.53794 -9.50765 -9.48270 -8.81977 -8.71920 -7.12924 -5.68097 -3.02284 2.13285 2.29464 2.72923 3.00221 3.46852 3.51467 3.53023 3.66150 3.80730 3.85072 3.97479 4.21254 4.37654 4.46061 4.56044 4.65466 4.69225 4.75582 4.93301 4.97546 5.03030 5.05171 5.09861 5.19199 5.25007 5.29259 5.31047 5.32057 5.45346 5.48112 5.61863 5.69586 5.70424 5.78735 5.85391 5.87335 5.96367 6.01183 6.26113 6.32827 6.40435 6.58820 6.64757 6.69474 7.00340 7.84300 7.88373 7.94719 8.08039 8.51041 9.30996 10.03595 10.24557 11.50446 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.003301 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.883947 B = 8479.373357 C = 8729.846912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.118 4.118 4 C 0.532 3.468 5 O -0.512 6.512 6 N -0.605 5.605 7 C 0.088 3.912 8 C -0.168 4.168 9 C 0.069 3.931 10 O -0.370 6.370 11 C 0.084 3.916 12 H 0.052 0.948 13 C 0.171 3.829 14 N -0.749 5.749 15 C -0.240 4.240 16 H 0.090 0.910 17 C 0.004 3.996 18 N -0.936 5.936 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.278 1.278 23 C 0.083 3.917 24 C -0.143 4.143 25 C 0.100 3.900 26 N -0.733 5.733 27 C 0.548 3.452 28 O -0.502 6.502 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.365 0.635 43 H 0.259 0.741 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.794 -7.810 -19.576 33.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.141 4.141 3 C -0.125 4.125 4 C 0.317 3.683 5 O -0.386 6.386 6 N -0.339 5.339 7 C -0.034 4.034 8 C -0.206 4.206 9 C -0.008 4.008 10 O -0.288 6.288 11 C 0.024 3.976 12 H 0.070 0.930 13 C 0.043 3.957 14 N -0.395 5.395 15 C -0.370 4.370 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.585 5.585 19 Si 0.717 3.283 20 H -0.210 1.210 21 H -0.219 1.219 22 H -0.204 1.204 23 C -0.041 4.041 24 C -0.181 4.181 25 C -0.024 4.024 26 N -0.389 5.389 27 C 0.332 3.668 28 O -0.375 6.375 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.197 0.803 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.104 0.896 49 H 0.091 0.909 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 24.647 -7.271 -19.491 32.253 hybrid contribution -0.166 -0.941 -0.921 1.327 sum 24.481 -8.212 -20.411 32.915 Atomic orbital electron populations 1.21965 0.93839 1.01960 1.04579 1.21651 0.98265 0.90921 1.03255 1.21709 0.97586 0.98875 0.94280 1.19795 0.81978 0.83099 0.83384 1.90817 1.30207 1.32848 1.84760 1.47828 1.44299 1.35141 1.06590 1.22577 0.91603 0.89033 1.00190 1.22536 0.98733 1.00779 0.98581 1.22181 0.91523 0.91059 0.96021 1.86422 1.81279 1.23066 1.38058 1.22336 0.93757 0.85285 0.96244 0.93013 1.20592 0.88917 0.92971 0.93195 1.42541 1.28611 1.19445 1.48888 1.19061 1.04331 1.01162 1.12473 0.89200 1.24637 0.97704 0.98106 0.98740 1.69704 1.19079 1.38214 1.31461 0.86506 0.77493 0.85837 0.78503 1.21045 1.21861 1.20415 1.22436 0.97380 0.96042 0.88212 1.23319 0.92363 0.99630 1.02754 1.22140 0.89029 0.98552 0.92717 1.46084 1.13282 1.52744 1.26824 1.19874 0.83682 0.78397 0.84894 1.90727 1.22477 1.61329 1.62949 0.92238 0.92594 0.89920 0.90325 0.89921 0.88598 0.90937 0.89512 0.89663 0.93248 0.89254 0.94699 0.93968 0.80250 0.93146 0.88711 0.89391 0.87482 0.88420 0.89637 0.90894 0.74750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.38 37.16 0.35 -1.64 16 2 C -0.10 -0.87 4.69 -26.73 -0.13 -1.00 16 3 C -0.12 -1.11 0.28 -155.67 -0.04 -1.16 16 4 C 0.53 6.79 5.02 -10.99 -0.06 6.73 16 5 O -0.51 -9.14 15.60 5.56 0.09 -9.05 16 6 N -0.60 -6.48 2.15 -172.47 -0.37 -6.85 16 7 C 0.09 0.58 4.11 -3.20 -0.01 0.57 16 8 C -0.17 -1.28 5.79 -27.17 -0.16 -1.44 16 9 C 0.07 0.80 6.38 36.42 0.23 1.03 16 10 O -0.37 -6.05 9.18 -26.53 -0.24 -6.29 16 11 C 0.08 1.42 2.73 -25.78 -0.07 1.35 16 12 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 13 C 0.17 3.53 5.95 -4.04 -0.02 3.50 16 14 N -0.75 -19.18 5.29 -59.91 -0.32 -19.50 16 15 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 16 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 17 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 18 N -0.94 -30.44 13.97 55.49 0.78 -29.67 16 19 Si 0.89 23.41 27.73 -169.99 -4.71 18.70 16 20 H -0.28 -7.39 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.28 -7.07 6.52 56.52 0.37 -6.70 16 23 C 0.08 1.08 4.84 -3.83 -0.02 1.06 16 24 C -0.14 -0.68 4.99 -24.91 -0.12 -0.81 16 25 C 0.10 0.48 7.79 -2.93 -0.02 0.46 16 26 N -0.73 -5.90 6.24 -59.01 -0.37 -6.27 16 27 C 0.55 6.59 6.49 -10.86 -0.07 6.52 16 28 O -0.50 -8.15 15.51 5.56 0.09 -8.06 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.82 6.92 -51.93 -0.36 0.46 16 31 H 0.08 1.17 5.97 -51.93 -0.31 0.86 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.53 5.49 -51.93 -0.29 0.24 16 34 H 0.10 0.48 2.95 -51.92 -0.15 0.33 16 35 H 0.07 0.32 7.07 -51.93 -0.37 -0.05 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 38 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.36 9.32 5.39 -40.82 -0.22 9.10 16 43 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 44 H 0.09 1.35 7.32 -51.93 -0.38 0.97 16 45 H 0.09 1.00 8.11 -51.93 -0.42 0.57 16 46 H 0.11 0.40 4.57 -51.93 -0.24 0.16 16 47 H 0.10 0.24 7.91 -51.93 -0.41 -0.17 16 48 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.41 2.69 8.96 -40.82 -0.37 2.33 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -39.76 376.56 -7.50 -47.26 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.71 Total: 6.18 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.40 Total: 7.88 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.28 Total: -62.28 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.07 Total: -23.41 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.71 Total: 18.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.76 -7.50 -47.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200720794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.638 kcal (2) G-P(sol) polarization free energy of solvation -39.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds