Wall clock time and date at job start Sat Apr 11 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47575 * 2 1 4 4 C 1.50702 * 110.43112 * 56.59168 * 3 2 1 5 5 O 1.21278 * 120.00123 * 251.83724 * 4 3 2 6 6 N 1.34775 * 119.99591 * 71.84254 * 4 3 2 7 7 C 1.47508 * 118.76138 * 356.81479 * 6 4 3 8 8 C 1.53567 * 111.03248 * 221.60858 * 7 6 4 9 9 C 1.51543 * 109.58054 * 39.97410 * 8 7 6 10 10 O 1.42152 * 108.75341 * 268.60327 * 9 8 7 11 11 C 1.38013 * 119.44573 * 87.22814 * 10 9 8 12 12 H 1.09003 * 109.46814 * 56.57224 * 11 10 9 13 13 C 1.53000 * 109.47179 * 176.56776 * 11 10 9 14 14 N 1.46498 * 109.47131 * 300.00841 * 13 11 10 15 15 C 1.36936 * 119.99917 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99922 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99979 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00031 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47240 * 90.00189 * 19 17 15 21 21 H 1.48500 * 109.47251 * 209.99825 * 19 17 15 22 22 H 1.48500 * 109.47169 * 329.99776 * 19 17 15 23 23 C 1.45119 * 118.75677 * 176.79049 * 6 4 3 24 24 C 1.54628 * 110.49017 * 179.13727 * 3 2 1 25 25 C 1.54826 * 101.60566 * 143.56920 * 24 3 2 26 26 N 1.46768 * 105.49422 * 334.56954 * 25 24 3 27 27 C 1.34419 * 111.30229 * 17.03657 * 26 25 24 28 28 O 1.21278 * 124.94427 * 179.63175 * 27 26 25 29 29 H 1.08994 * 109.47067 * 186.23099 * 1 2 3 30 30 H 1.09000 * 109.47037 * 306.23413 * 1 2 3 31 31 H 1.09007 * 109.47141 * 66.23335 * 1 2 3 32 32 H 1.09006 * 109.47351 * 239.99790 * 2 1 3 33 33 H 1.09004 * 109.47045 * 120.00069 * 2 1 3 34 34 H 1.09007 * 109.16302 * 342.00668 * 7 6 4 35 35 H 1.09001 * 109.17282 * 101.20565 * 7 6 4 36 36 H 1.09004 * 109.45800 * 160.00495 * 8 7 6 37 37 H 1.08996 * 109.45649 * 279.94684 * 8 7 6 38 38 H 1.09000 * 109.58905 * 28.37762 * 9 8 7 39 39 H 1.08998 * 109.59292 * 148.82119 * 9 8 7 40 40 H 1.09003 * 109.47070 * 60.01009 * 13 11 10 41 41 H 1.09009 * 109.46921 * 180.02562 * 13 11 10 42 42 H 0.96994 * 119.99775 * 0.02562 * 14 13 11 43 43 H 0.97002 * 120.00592 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.46245 * 330.71611 * 23 6 4 45 45 H 1.08999 * 109.45188 * 210.75389 * 23 6 4 46 46 H 1.09001 * 110.96691 * 261.73099 * 24 3 2 47 47 H 1.08997 * 110.96769 * 25.48631 * 24 3 2 48 48 H 1.08993 * 110.22068 * 215.56877 * 25 24 3 49 49 H 1.08996 * 110.25301 * 93.58032 * 25 24 3 50 50 H 0.96999 * 124.35079 * 197.05627 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4824 2.1977 1.1789 5 8 0.6342 3.0476 1.0084 6 7 1.9264 1.9286 2.4226 7 6 2.9060 0.8413 2.6068 8 6 2.5726 0.0038 3.8500 9 6 1.0730 -0.1936 3.9422 10 8 0.5214 0.8548 4.7280 11 6 0.1631 2.0413 4.1208 12 1 -0.5495 1.8394 3.3211 13 6 -0.4791 2.9693 5.1539 14 7 -1.6712 2.3271 5.7129 15 6 -2.4149 2.9734 6.6639 16 1 -2.1227 3.9568 7.0015 17 6 -3.5442 2.3647 7.1939 18 7 -4.2587 2.9858 8.1083 19 14 -4.0499 0.6642 6.6093 20 1 -3.4002 -0.3652 7.4599 21 1 -5.5254 0.5262 6.7054 22 1 -3.6264 0.4796 5.1981 23 6 1.4229 2.7199 3.5301 24 6 3.5860 1.4699 0.0218 25 6 3.8886 2.6909 -0.8808 26 7 2.7262 2.8208 -1.7673 27 6 1.6719 2.1342 -1.2941 28 8 0.5841 2.0770 -1.8273 29 1 -0.3633 -1.0215 0.1115 30 1 -0.3633 0.6074 0.8289 31 1 -0.3634 0.4142 -0.9406 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8949 0.1969 1.7276 35 1 3.9010 1.2715 2.7214 36 1 3.0626 -0.9671 3.7759 37 1 2.9260 0.5213 4.7419 38 1 0.6389 -0.1683 2.9427 39 1 0.8588 -1.1537 4.4118 40 1 0.2336 3.1712 5.9536 41 1 -0.7625 3.9062 4.6742 42 1 -1.9334 1.4438 5.4099 43 1 -5.0477 2.5603 8.4790 44 1 1.1654 3.7180 3.1757 45 1 2.1900 2.7950 4.3008 46 1 3.9590 1.6282 1.0337 47 1 3.9983 0.5560 -0.4058 48 1 4.7909 2.5127 -1.4655 49 1 4.0026 3.5894 -0.2743 50 1 2.7196 3.3357 -2.5894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200720794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:39 Heat of formation + Delta-G solvation = -103.000548 kcal Electronic energy + Delta-G solvation = -32466.192591 eV Core-core repulsion = 28300.649461 eV Total energy + Delta-G solvation = -4165.543130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.84123 -40.94107 -39.43490 -37.73993 -37.02069 -36.40395 -35.38148 -34.29814 -33.00813 -31.38103 -30.44125 -28.57515 -27.86784 -26.80569 -24.62022 -24.11007 -23.51241 -22.79117 -22.19505 -21.81045 -19.86281 -19.83217 -18.53349 -18.27458 -17.68709 -17.62567 -17.24415 -16.86590 -16.46965 -16.24461 -15.89387 -15.49402 -15.38650 -15.07954 -14.98745 -14.86279 -14.54303 -14.47363 -14.41340 -14.15423 -13.93599 -13.82386 -13.74641 -13.32462 -13.07815 -12.89631 -12.87094 -12.70738 -12.52322 -12.40610 -12.26718 -12.07444 -11.94184 -11.86091 -11.75610 -11.42242 -11.04875 -10.94204 -10.64545 -10.56428 -10.11680 -9.71804 -9.34569 -8.06476 -5.39347 1.27191 1.33201 1.36520 1.37744 1.44047 1.94063 2.36872 2.44826 2.67200 3.01531 3.24945 3.28173 3.38314 3.45806 3.63577 3.81077 3.88489 3.98317 4.02619 4.04446 4.16856 4.23334 4.24269 4.33754 4.36288 4.47965 4.49130 4.61781 4.66860 4.71831 4.76163 4.79946 4.82784 4.85800 4.96038 4.99041 5.04771 5.04962 5.15185 5.20792 5.32714 5.49001 5.69850 5.79106 5.95919 6.15660 6.17845 6.69167 6.97931 7.03078 7.18480 7.78984 7.99095 9.15074 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.003301 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.883947 B = 8479.373357 C = 8729.846912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.115 4.115 4 C 0.527 3.473 5 O -0.579 6.579 6 N -0.597 5.597 7 C 0.078 3.922 8 C -0.159 4.159 9 C 0.056 3.944 10 O -0.396 6.396 11 C 0.102 3.898 12 H 0.018 0.982 13 C 0.165 3.835 14 N -0.754 5.754 15 C -0.236 4.236 16 H 0.061 0.939 17 C -0.061 4.061 18 N -0.981 5.981 19 Si 0.956 3.044 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.094 3.906 24 C -0.133 4.133 25 C 0.092 3.908 26 N -0.725 5.725 27 C 0.529 3.471 28 O -0.562 6.562 29 H 0.074 0.926 30 H 0.018 0.982 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.034 0.966 42 H 0.365 0.635 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.137 0.863 48 H 0.126 0.874 49 H 0.071 0.929 50 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.584 -10.960 -20.628 38.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.137 4.137 3 C -0.122 4.122 4 C 0.315 3.685 5 O -0.457 6.457 6 N -0.329 5.329 7 C -0.041 4.041 8 C -0.197 4.197 9 C -0.020 4.020 10 O -0.315 6.315 11 C 0.041 3.959 12 H 0.036 0.964 13 C 0.038 3.962 14 N -0.399 5.399 15 C -0.367 4.367 16 H 0.079 0.921 17 C -0.253 4.253 18 N -0.632 5.632 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.218 1.218 22 H -0.192 1.192 23 C -0.030 4.030 24 C -0.169 4.169 25 C -0.031 4.031 26 N -0.379 5.379 27 C 0.314 3.686 28 O -0.440 6.440 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.198 0.802 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.133 0.867 46 H 0.144 0.856 47 H 0.155 0.845 48 H 0.144 0.856 49 H 0.089 0.911 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 29.569 -10.442 -20.554 37.495 hybrid contribution -1.622 0.114 -0.588 1.729 sum 27.948 -10.328 -21.142 36.534 Atomic orbital electron populations 1.21904 0.97222 1.01708 1.01352 1.21746 0.95194 0.90801 1.05926 1.21724 1.01136 0.98275 0.91092 1.20476 0.80943 0.82352 0.84721 1.90789 1.33157 1.35990 1.85808 1.47904 1.44305 1.35566 1.05142 1.23045 0.92057 0.88185 1.00803 1.22492 0.95390 1.03055 0.98726 1.22551 0.94387 0.89854 0.95215 1.86343 1.82085 1.23527 1.39535 1.21876 0.94719 0.85663 0.93596 0.96414 1.20746 0.87611 0.93606 0.94218 1.42569 1.29721 1.19428 1.48201 1.19079 1.04683 1.00207 1.12740 0.92144 1.25452 0.97939 1.02575 0.99292 1.69870 1.19830 1.40289 1.33192 0.85389 0.76952 0.80712 0.78579 1.19685 1.21758 1.19242 1.22134 0.96357 0.95054 0.89462 1.23525 0.87860 1.01333 1.04222 1.22500 0.88931 0.98809 0.92847 1.46227 1.13485 1.51131 1.27090 1.20506 0.83546 0.78826 0.85724 1.90690 1.24932 1.63615 1.64775 0.90671 0.96327 0.92870 0.87714 0.86864 0.86337 0.86825 0.85428 0.90185 0.93917 0.88280 0.93914 0.94827 0.80196 0.93178 0.90630 0.86721 0.85609 0.84465 0.85624 0.91092 0.74286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.38 71.98 0.67 -3.32 16 2 C -0.10 -1.39 4.69 30.59 0.14 -1.24 16 3 C -0.12 -1.92 0.28 -52.93 -0.02 -1.94 16 4 C 0.53 13.14 5.02 87.66 0.44 13.58 16 5 O -0.58 -21.95 15.60 -3.02 -0.05 -22.00 16 6 N -0.60 -11.48 2.15 -817.96 -1.76 -13.24 16 7 C 0.08 0.61 4.11 86.38 0.35 0.97 16 8 C -0.16 -1.61 5.79 30.31 0.18 -1.43 16 9 C 0.06 1.14 6.38 71.50 0.46 1.60 16 10 O -0.40 -12.55 9.18 -117.84 -1.08 -13.63 16 11 C 0.10 3.50 2.73 31.21 0.09 3.59 16 12 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 13 C 0.16 7.03 5.95 86.38 0.51 7.55 16 14 N -0.75 -39.54 5.29 -343.44 -1.82 -41.36 16 15 C -0.24 -14.55 10.47 84.03 0.88 -13.67 16 16 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 17 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 18 N -0.98 -65.63 13.97 21.65 0.30 -65.33 16 19 Si 0.96 49.20 27.73 68.60 1.90 51.11 16 20 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 22 H -0.27 -13.09 6.52 99.48 0.65 -12.44 16 23 C 0.09 2.41 4.84 87.26 0.42 2.83 16 24 C -0.13 -0.52 4.99 31.77 0.16 -0.36 16 25 C 0.09 0.50 7.79 86.95 0.68 1.17 16 26 N -0.72 -10.48 6.24 -459.21 -2.87 -13.34 16 27 C 0.53 12.60 6.49 87.90 0.57 13.17 16 28 O -0.56 -19.45 15.51 -3.02 -0.05 -19.50 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.02 0.56 6.92 -2.39 -0.02 0.55 16 31 H 0.05 1.61 5.97 -2.38 -0.01 1.60 16 32 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.11 0.85 5.49 -2.39 -0.01 0.84 16 34 H 0.12 0.40 2.95 -2.38 -0.01 0.39 16 35 H 0.11 0.13 7.07 -2.39 -0.02 0.11 16 36 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.99 8.01 -2.39 -0.02 0.97 16 38 H 0.04 0.93 7.40 -2.39 -0.02 0.91 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.37 18.86 5.39 -92.71 -0.50 18.36 16 43 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 44 H 0.08 2.24 7.32 -2.38 -0.02 2.22 16 45 H 0.11 2.31 8.11 -2.39 -0.02 2.30 16 46 H 0.13 0.06 4.57 -2.39 -0.01 0.05 16 47 H 0.14 -0.42 7.91 -2.39 -0.02 -0.44 16 48 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 49 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.42 5.05 8.96 -92.71 -0.83 4.22 16 Total: -1.00 -97.19 376.56 0.18 -97.00 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.41 Total: 21.16 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 6.00 Total: 19.13 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -6.14 Total: -133.27 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -1.18 Total: -55.13 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.90 Total: 51.11 kcal Total: -97.19 0.18 -97.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200720794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.996 kcal (2) G-P(sol) polarization free energy of solvation -97.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds