Wall clock time and date at job start Sat Apr 11 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46647 * 2 1 4 4 C 1.50692 * 110.43859 * 305.81512 * 3 2 1 5 5 O 1.21282 * 120.00415 * 124.65012 * 4 3 2 6 6 N 1.34777 * 119.99989 * 304.65228 * 4 3 2 7 7 C 1.47505 * 118.75977 * 355.03803 * 6 4 3 8 8 C 1.53561 * 111.03289 * 221.63295 * 7 6 4 9 9 C 1.51536 * 109.58234 * 39.97125 * 8 7 6 10 10 O 1.42079 * 108.76107 * 268.59379 * 9 8 7 11 11 C 1.38013 * 119.44291 * 87.24166 * 10 9 8 12 12 H 1.09007 * 109.46585 * 56.55985 * 11 10 9 13 13 C 1.52987 * 109.47176 * 176.55205 * 11 10 9 14 14 N 1.46503 * 109.47478 * 300.01383 * 13 11 10 15 15 C 1.36935 * 119.99903 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99935 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99819 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00172 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47293 * 89.99648 * 19 17 15 21 21 H 1.48499 * 109.47036 * 209.99595 * 19 17 15 22 22 H 1.48495 * 109.47158 * 329.99717 * 19 17 15 23 23 C 1.45128 * 118.75945 * 175.05641 * 6 4 3 24 24 C 1.54624 * 110.48754 * 183.27161 * 3 2 1 25 25 C 1.54483 * 101.76961 * 216.39613 * 24 3 2 26 26 N 1.46767 * 105.46913 * 25.41131 * 25 24 3 27 27 C 1.34417 * 111.30227 * 342.99237 * 26 25 24 28 28 O 1.21286 * 124.94034 * 180.44342 * 27 26 25 29 29 H 1.08995 * 109.47572 * 54.82788 * 1 2 3 30 30 H 1.09005 * 109.47148 * 174.82486 * 1 2 3 31 31 H 1.09000 * 109.47727 * 294.81916 * 1 2 3 32 32 H 1.08999 * 109.46809 * 240.00552 * 2 1 3 33 33 H 1.08993 * 109.47400 * 119.99820 * 2 1 3 34 34 H 1.09002 * 109.16272 * 342.02937 * 7 6 4 35 35 H 1.09003 * 109.17104 * 101.22565 * 7 6 4 36 36 H 1.09000 * 109.45742 * 160.00936 * 8 7 6 37 37 H 1.09004 * 109.45565 * 279.94106 * 8 7 6 38 38 H 1.08998 * 109.58771 * 28.38338 * 9 8 7 39 39 H 1.09001 * 109.59106 * 148.67381 * 9 8 7 40 40 H 1.09007 * 109.46986 * 60.01351 * 13 11 10 41 41 H 1.08999 * 109.47268 * 180.02562 * 13 11 10 42 42 H 0.96999 * 119.99983 * 359.97438 * 14 13 11 43 43 H 0.96998 * 120.00201 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.45612 * 330.69514 * 23 6 4 45 45 H 1.09003 * 109.46256 * 210.74024 * 23 6 4 46 46 H 1.09010 * 110.96650 * 334.51441 * 24 3 2 47 47 H 1.08996 * 110.97328 * 98.27436 * 24 3 2 48 48 H 1.08997 * 110.24708 * 144.41395 * 25 24 3 49 49 H 1.08995 * 110.24095 * 266.41801 * 25 24 3 50 50 H 0.97001 * 124.34682 * 162.98290 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4362 2.2141 -1.1450 5 8 0.8341 3.2450 -0.9312 6 7 1.5652 1.7585 -2.4069 7 6 2.3953 0.5634 -2.6485 8 6 3.2554 0.7354 -3.9090 9 6 3.7873 2.1530 -3.9714 10 8 2.8736 2.9518 -4.7102 11 6 1.8159 3.5520 -4.0578 12 1 2.1951 4.1753 -3.2479 13 6 1.0338 4.4199 -5.0456 14 7 1.9172 5.4510 -5.5956 15 6 1.4339 6.3516 -6.5070 16 1 0.4017 6.3015 -6.8206 17 6 2.2711 7.3284 -7.0286 18 7 3.5293 7.3891 -6.6467 19 14 1.6122 8.5565 -8.2723 20 1 1.0794 9.7454 -7.5596 21 1 2.7080 8.9751 -9.1829 22 1 0.5253 7.9253 -9.0632 23 6 0.8824 2.4624 -3.4767 24 6 3.5836 1.4709 -0.0827 25 6 3.9255 2.6765 0.8207 26 7 2.8005 2.7965 1.7557 27 6 1.7265 2.1178 1.3170 28 8 0.6608 2.0563 1.8929 29 1 -0.3634 0.5919 -0.8400 30 1 -0.3634 -1.0235 -0.0927 31 1 -0.3634 0.4313 0.9327 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.0471 0.4009 -1.7901 35 1 1.7467 -0.3037 -2.7734 36 1 4.0904 0.0355 -3.8772 37 1 2.6487 0.5362 -4.7925 38 1 3.8867 2.5507 -2.9614 39 1 4.7600 2.1571 -4.4632 40 1 0.6544 3.7966 -5.8555 41 1 0.1986 4.8943 -4.5303 42 1 2.8442 5.4963 -5.3137 43 1 4.1142 8.0719 -7.0109 44 1 -0.0213 2.9295 -3.0851 45 1 0.6146 1.7566 -4.2630 46 1 4.0125 0.5512 0.3154 47 1 3.9164 1.6436 -1.1061 48 1 4.8506 2.4891 1.3657 49 1 4.0165 3.5826 0.2218 50 1 2.8286 3.3008 2.5838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200720796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:44 Heat of formation + Delta-G solvation = -77.267880 kcal Electronic energy + Delta-G solvation = -32305.782596 eV Core-core repulsion = 28141.355318 eV Total energy + Delta-G solvation = -4164.427278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96707 -39.88636 -38.25251 -36.75200 -35.94063 -34.63416 -34.38984 -32.87904 -30.91763 -30.53180 -28.94151 -27.68699 -26.80197 -25.26582 -23.40351 -23.08894 -22.71689 -21.66023 -21.00259 -20.78075 -19.01526 -17.73062 -17.36037 -17.10902 -16.61577 -16.49039 -15.98232 -15.93790 -15.22614 -14.80847 -14.61382 -14.41646 -14.40675 -14.10980 -13.85028 -13.66851 -13.40425 -13.33443 -13.09880 -13.01223 -12.85525 -12.53009 -12.33671 -12.13976 -12.02093 -11.94211 -11.66416 -11.46875 -11.26948 -11.18956 -10.95181 -10.78211 -10.75048 -10.26602 -10.03783 -9.92532 -9.74211 -9.64152 -9.41846 -9.38310 -8.81138 -8.60880 -6.82689 -5.67928 -2.95762 2.20360 2.37375 2.82027 3.08640 3.49250 3.53900 3.55735 3.73910 3.91615 3.92864 4.02979 4.33397 4.50542 4.53074 4.62993 4.67250 4.74697 4.86459 4.96809 5.06485 5.10302 5.13465 5.20345 5.28537 5.32854 5.40689 5.41116 5.43713 5.44950 5.57730 5.65045 5.65199 5.79079 5.82894 5.93520 5.97678 6.07980 6.17745 6.35024 6.43058 6.48272 6.67863 6.72658 6.79521 7.09644 7.76488 7.94634 7.99310 8.01984 8.50561 9.62211 10.20498 10.56779 11.55066 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003041 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.882023 B = 9206.276161 C = 9528.570016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.118 4.118 4 C 0.533 3.467 5 O -0.517 6.517 6 N -0.602 5.602 7 C 0.089 3.911 8 C -0.169 4.169 9 C 0.073 3.927 10 O -0.366 6.366 11 C 0.090 3.910 12 H 0.051 0.949 13 C 0.166 3.834 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.082 3.918 24 C -0.135 4.135 25 C 0.099 3.901 26 N -0.728 5.728 27 C 0.551 3.449 28 O -0.511 6.511 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.027 0.973 41 H 0.034 0.966 42 H 0.387 0.613 43 H 0.254 0.746 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -21.260 15.605 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.146 4.146 3 C -0.125 4.125 4 C 0.319 3.681 5 O -0.391 6.391 6 N -0.336 5.336 7 C -0.032 4.032 8 C -0.207 4.207 9 C -0.004 4.004 10 O -0.283 6.283 11 C 0.030 3.970 12 H 0.069 0.931 13 C 0.038 3.962 14 N -0.369 5.369 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.042 4.042 24 C -0.173 4.173 25 C -0.025 4.025 26 N -0.384 5.384 27 C 0.335 3.665 28 O -0.385 6.385 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.221 0.779 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.908 -20.696 15.599 26.079 hybrid contribution 0.129 0.843 -0.013 0.853 sum 3.037 -19.853 15.586 25.422 Atomic orbital electron populations 1.21921 0.94254 1.01801 1.04096 1.21744 0.98000 0.91203 1.03697 1.21729 0.97594 0.98783 0.94361 1.19736 0.80271 0.84876 0.83198 1.90804 1.41217 1.23176 1.83904 1.47777 1.49766 1.29525 1.06502 1.22494 0.94008 0.87223 0.99520 1.22563 1.00435 0.99343 0.98407 1.22120 0.92979 0.88933 0.96331 1.86437 1.38300 1.65455 1.38149 1.22257 0.87123 0.91953 0.95681 0.93073 1.20616 0.92557 0.89586 0.93491 1.42197 1.10640 1.33163 1.50918 1.19241 0.95224 1.06468 1.15859 0.91201 1.24723 0.95798 0.99683 1.00823 1.69677 1.04597 1.36531 1.47354 0.86187 0.77511 0.81499 0.80992 1.21798 1.21831 1.20779 1.22469 0.96869 0.95640 0.89183 1.23019 0.92088 0.99956 1.02214 1.22107 0.89831 0.98798 0.91798 1.46048 1.14064 1.53128 1.25190 1.19849 0.83315 0.78090 0.85226 1.90706 1.24487 1.61555 1.61778 0.92759 0.92325 0.90234 0.89550 0.90587 0.88793 0.91082 0.89534 0.89745 0.93767 0.89171 0.95561 0.94803 0.77891 0.93655 0.88920 0.89588 0.88232 0.88080 0.89447 0.90504 0.74699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.41 37.16 0.35 -1.33 16 2 C -0.11 -0.87 4.53 -26.73 -0.12 -0.99 16 3 C -0.12 -1.19 0.29 -155.68 -0.04 -1.23 16 4 C 0.53 7.20 4.85 -10.99 -0.05 7.15 16 5 O -0.52 -9.53 15.59 5.56 0.09 -9.44 16 6 N -0.60 -7.00 2.19 -172.48 -0.38 -7.38 16 7 C 0.09 0.68 3.85 -3.20 -0.01 0.67 16 8 C -0.17 -1.39 5.78 -27.18 -0.16 -1.55 16 9 C 0.07 0.87 6.37 36.42 0.23 1.10 16 10 O -0.37 -6.24 9.18 -26.53 -0.24 -6.48 16 11 C 0.09 1.58 2.73 -25.79 -0.07 1.51 16 12 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 13 C 0.17 3.54 5.95 -4.05 -0.02 3.52 16 14 N -0.72 -19.41 5.49 -59.91 -0.33 -19.74 16 15 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 19 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.08 1.15 4.83 -3.83 -0.02 1.13 16 24 C -0.14 -0.85 4.82 -25.10 -0.12 -0.98 16 25 C 0.10 0.68 7.78 -3.12 -0.02 0.66 16 26 N -0.73 -6.91 6.24 -59.20 -0.37 -7.28 16 27 C 0.55 7.02 6.44 -10.86 -0.07 6.95 16 28 O -0.51 -8.36 15.68 5.55 0.09 -8.28 16 29 H 0.05 0.65 6.91 -51.93 -0.36 0.29 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.02 6.06 -51.93 -0.31 0.70 16 32 H 0.09 0.49 4.64 -51.93 -0.24 0.25 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.52 3.13 -51.93 -0.16 0.36 16 35 H 0.07 0.45 7.51 -51.93 -0.39 0.06 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 38 H 0.04 0.50 6.17 -51.93 -0.32 0.18 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.39 10.99 7.53 -40.82 -0.31 10.68 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.09 1.43 7.35 -51.93 -0.38 1.05 16 45 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 46 H 0.10 0.35 7.92 -51.92 -0.41 -0.06 16 47 H 0.10 0.61 4.92 -51.93 -0.26 0.35 16 48 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.41 3.27 8.96 -40.82 -0.37 2.90 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -38.30 378.06 -7.83 -46.13 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.70 Total: 8.03 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -0.38 Total: 9.04 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.35 Total: -62.67 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.07 Total: -24.20 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.30 -7.83 -46.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200720796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.141 kcal (2) G-P(sol) polarization free energy of solvation -38.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds