Wall clock time and date at job start Sat Apr 11 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.67320 * 2 1 4 4 O 1.21281 * 120.00128 * 239.38771 * 3 2 1 5 5 N 1.34778 * 119.99997 * 59.38367 * 3 2 1 6 6 C 1.47506 * 118.75589 * 354.15458 * 5 3 2 7 7 C 1.53574 * 111.02862 * 138.34830 * 6 5 3 8 8 C 1.51537 * 109.57578 * 320.01997 * 7 6 5 9 9 O 1.42155 * 108.74960 * 91.40561 * 8 7 6 10 10 C 1.38016 * 119.44069 * 272.76183 * 9 8 7 11 11 H 1.09004 * 109.46556 * 303.43380 * 10 9 8 12 12 C 1.52998 * 109.47029 * 183.43636 * 10 9 8 13 13 N 1.46496 * 109.47407 * 64.99144 * 12 10 9 14 14 C 1.36935 * 120.00375 * 180.02562 * 13 12 10 15 15 H 1.08007 * 119.99569 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00263 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99814 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99840 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47346 * 89.99988 * 18 16 14 20 20 H 1.48499 * 109.46907 * 209.99775 * 18 16 14 21 21 H 1.48501 * 109.47186 * 329.99845 * 18 16 14 22 22 C 1.45120 * 118.76007 * 174.13635 * 5 3 2 23 23 C 1.53348 * 109.70578 * 239.48154 * 2 1 3 24 24 C 1.52937 * 108.66051 * 172.70741 * 23 2 1 25 25 N 1.45748 * 110.48239 * 50.78279 * 24 23 2 26 26 C 1.33353 * 124.10695 * 340.88806 * 25 24 23 27 27 O 1.21281 * 118.24659 * 182.22365 * 26 25 24 28 28 C 1.50179 * 123.50811 * 2.24451 * 26 25 24 29 29 H 1.09001 * 109.46880 * 60.00633 * 1 2 3 30 30 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47696 * 300.00175 * 1 2 3 32 32 H 1.09002 * 109.16980 * 258.74085 * 6 5 3 33 33 H 1.09002 * 109.16686 * 17.94810 * 6 5 3 34 34 H 1.08997 * 109.45362 * 80.05309 * 7 6 5 35 35 H 1.09001 * 109.44974 * 199.99104 * 7 6 5 36 36 H 1.09000 * 109.58935 * 211.17858 * 8 7 6 37 37 H 1.08990 * 109.59376 * 331.47236 * 8 7 6 38 38 H 1.08996 * 109.46920 * 184.99771 * 12 10 9 39 39 H 1.09000 * 109.47077 * 304.98827 * 12 10 9 40 40 H 0.97005 * 120.00067 * 359.97438 * 13 12 10 41 41 H 0.97004 * 119.99785 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.46398 * 149.28368 * 22 5 3 43 43 H 1.09002 * 109.44805 * 29.31283 * 22 5 3 44 44 H 1.09002 * 109.59982 * 292.47198 * 23 2 1 45 45 H 1.08994 * 109.60168 * 52.96388 * 23 2 1 46 46 H 1.09000 * 109.31393 * 290.46338 * 24 23 2 47 47 H 1.09006 * 109.29170 * 171.08491 * 24 23 2 48 48 H 0.97003 * 117.94609 * 160.90713 * 25 24 23 49 49 H 1.09003 * 109.40118 * 222.29458 * 28 26 25 50 50 H 1.08993 * 109.39879 * 102.54661 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4190 0.0000 4 8 2.7451 1.8100 -0.9039 5 7 1.7044 2.2537 1.0045 6 6 0.7389 1.7925 2.0199 7 6 1.1776 2.2152 3.4296 8 6 2.6783 2.0534 3.5642 9 8 3.3041 3.2776 3.2031 10 6 3.6135 3.5167 1.8794 11 1 4.2503 2.7153 1.5047 12 6 4.3511 4.8519 1.7613 13 7 5.6407 4.7601 2.4503 14 6 6.4805 5.8413 2.4785 15 1 6.1924 6.7616 1.9923 16 6 7.7026 5.7540 3.1309 17 7 8.0539 4.6323 3.7230 18 14 8.8486 7.2288 3.1686 19 1 8.5503 8.0570 4.3646 20 1 10.2564 6.7602 3.2296 21 1 8.6500 8.0415 1.9417 22 6 2.3097 3.5720 1.0465 23 6 2.0470 -0.7331 -1.2437 24 6 3.5651 -0.5625 -1.3164 25 7 4.1799 -0.9184 -0.0438 26 6 3.5211 -0.9781 1.1141 27 8 4.1473 -1.2464 2.1175 28 6 2.0453 -0.7315 1.2420 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.2392 2.2232 1.8054 33 1 0.6674 0.7057 1.9781 34 1 0.9086 3.2583 3.5960 35 1 0.6772 1.5892 4.1684 36 1 2.9281 1.8058 4.5959 37 1 3.0207 1.2567 2.9040 38 1 4.5170 5.0835 0.7092 39 1 3.7512 5.6400 2.2165 40 1 5.8993 3.9336 2.8873 41 1 8.9078 4.5715 4.1792 42 1 1.6154 4.2759 1.5051 43 1 2.5404 3.8979 0.0323 44 1 1.8008 -1.7926 -1.1724 45 1 1.5881 -0.3077 -2.1361 46 1 3.8004 0.4753 -1.5525 47 1 3.9627 -1.2063 -2.1011 48 1 5.1278 -1.1245 -0.0387 49 1 1.8552 -0.1224 2.1258 50 1 1.5263 -1.6847 1.3421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200795449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:47 Heat of formation + Delta-G solvation = -67.767101 kcal Electronic energy + Delta-G solvation = -32790.409463 eV Core-core repulsion = 28626.394170 eV Total energy + Delta-G solvation = -4164.015293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89142 -39.74242 -38.61804 -36.49890 -36.19247 -34.58533 -34.20678 -32.81649 -30.90058 -29.97068 -28.95826 -28.40820 -26.68103 -25.50405 -24.14183 -23.41990 -22.08235 -21.41952 -20.92369 -20.23909 -19.06985 -17.60958 -17.13123 -17.07027 -16.58219 -16.31191 -16.12041 -15.86340 -15.43630 -14.91593 -14.62100 -14.53894 -14.35012 -14.18144 -14.04183 -13.61457 -13.28545 -13.15505 -13.02809 -12.84185 -12.62382 -12.49561 -12.40513 -12.22658 -12.02650 -11.77532 -11.62071 -11.52585 -11.43563 -11.09937 -10.82801 -10.74616 -10.59887 -10.19306 -9.99428 -9.88437 -9.79108 -9.62178 -9.37881 -8.90874 -8.78549 -8.55275 -6.80024 -5.64087 -2.92801 2.35497 2.53509 2.74566 3.18947 3.51095 3.55218 3.57638 3.88755 3.99694 4.05940 4.19411 4.43429 4.47612 4.54898 4.63615 4.69688 4.86975 4.93297 5.03228 5.07269 5.12574 5.16377 5.22764 5.28146 5.35493 5.37859 5.44409 5.48334 5.52050 5.55223 5.61136 5.64458 5.68366 5.84162 5.94940 6.01549 6.06654 6.14090 6.37668 6.47213 6.67637 6.68314 6.81638 7.13200 7.25133 7.78609 7.98053 8.04978 8.12110 8.53577 9.64927 10.23572 10.59326 11.58647 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.003522 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.780293 B = 7948.246035 C = 8428.561090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.086 4.086 3 C 0.517 3.483 4 O -0.522 6.522 5 N -0.602 5.602 6 C 0.081 3.919 7 C -0.171 4.171 8 C 0.070 3.930 9 O -0.366 6.366 10 C 0.090 3.910 11 H 0.048 0.952 12 C 0.167 3.833 13 N -0.726 5.726 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.079 3.921 23 C -0.107 4.107 24 C 0.084 3.916 25 N -0.713 5.713 26 C 0.514 3.486 27 O -0.551 6.551 28 C -0.142 4.142 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.027 0.973 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.072 0.928 48 H 0.402 0.598 49 H 0.116 0.884 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.361 -14.315 -9.166 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.089 4.089 3 C 0.304 3.696 4 O -0.398 6.398 5 N -0.335 5.335 6 C -0.041 4.041 7 C -0.209 4.209 8 C -0.007 4.007 9 O -0.284 6.284 10 C 0.030 3.970 11 H 0.066 0.934 12 C 0.039 3.961 13 N -0.370 5.370 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.044 4.044 23 C -0.145 4.145 24 C -0.040 4.040 25 N -0.365 5.365 26 C 0.300 3.700 27 O -0.429 6.429 28 C -0.181 4.181 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.130 0.870 47 H 0.090 0.910 48 H 0.237 0.763 49 H 0.133 0.867 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.810 -13.870 -9.033 27.379 hybrid contribution 0.890 0.182 -0.037 0.909 sum -20.920 -13.688 -9.069 26.594 Atomic orbital electron populations 1.22330 0.91522 1.03721 1.04156 1.20924 0.98006 0.92866 0.97137 1.20448 0.80276 0.87055 0.81772 1.90563 1.37242 1.76474 1.35535 1.47854 1.44238 1.15549 1.25836 1.22728 0.91847 1.01143 0.88352 1.22582 0.98649 1.04001 0.95646 1.22177 0.90342 0.87107 1.01033 1.86437 1.78850 1.37179 1.25966 1.22261 0.93173 0.99541 0.82060 0.93364 1.20592 0.87853 0.91656 0.96033 1.42234 1.15217 1.14918 1.64618 1.19224 0.97082 0.92187 1.28487 0.91210 1.24738 0.98121 0.97192 1.00930 1.69688 1.22735 1.25075 1.40433 0.86192 0.80398 0.82016 0.77602 1.21773 1.21837 1.20797 1.22480 0.95951 0.83036 1.02982 1.21729 0.95476 1.00238 0.97079 1.22004 0.92867 1.04484 0.84605 1.45432 1.13550 1.69644 1.07861 1.19913 0.89998 0.76938 0.83148 1.90812 1.67990 1.49055 1.35092 1.22193 0.93375 1.03509 0.99069 0.91317 0.90893 0.90093 0.91003 0.87919 0.89749 0.89512 0.89155 0.93243 0.94902 0.95523 0.77906 0.93597 0.89771 0.88644 0.90414 0.89145 0.87045 0.90996 0.76285 0.86672 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.09 37.16 0.30 -0.53 16 2 C -0.09 -0.71 0.51 -155.45 -0.08 -0.79 16 3 C 0.52 6.22 5.80 -10.99 -0.06 6.15 16 4 O -0.52 -7.83 12.57 5.56 0.07 -7.76 16 5 N -0.60 -7.02 2.19 -172.47 -0.38 -7.40 16 6 C 0.08 0.67 3.79 -3.19 -0.01 0.66 16 7 C -0.17 -1.66 5.74 -27.17 -0.16 -1.82 16 8 C 0.07 1.01 6.30 36.42 0.23 1.24 16 9 O -0.37 -6.86 9.38 -26.54 -0.25 -7.11 16 10 C 0.09 1.67 2.68 -25.78 -0.07 1.60 16 11 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 12 C 0.17 3.66 5.92 -4.05 -0.02 3.63 16 13 N -0.73 -20.04 5.54 -59.91 -0.33 -20.37 16 14 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 15 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -29.81 13.06 55.49 0.72 -29.09 16 18 Si 0.91 23.36 29.55 -169.99 -5.02 18.34 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 20 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.08 1.12 4.91 -3.83 -0.02 1.10 16 23 C -0.11 -0.80 4.69 -26.58 -0.12 -0.93 16 24 C 0.08 0.81 6.54 -4.48 -0.03 0.78 16 25 N -0.71 -8.49 5.44 -61.38 -0.33 -8.83 16 26 C 0.51 6.91 7.38 -11.87 -0.09 6.82 16 27 O -0.55 -9.84 17.78 5.56 0.10 -9.74 16 28 C -0.14 -1.31 4.26 -28.10 -0.12 -1.43 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.36 4.27 -51.93 -0.22 0.14 16 32 H 0.07 0.46 7.78 -51.93 -0.40 0.05 16 33 H 0.10 0.68 2.60 -51.93 -0.14 0.54 16 34 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.76 5.96 -51.93 -0.31 0.45 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.39 11.52 7.65 -40.82 -0.31 11.21 16 41 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 42 H 0.08 1.08 8.11 -51.93 -0.42 0.65 16 43 H 0.10 1.42 7.20 -51.93 -0.37 1.05 16 44 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.11 1.40 5.20 -51.93 -0.27 1.13 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.40 4.76 8.80 -40.82 -0.36 4.40 16 49 H 0.12 1.09 3.55 -51.93 -0.18 0.91 16 50 H 0.11 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -37.90 373.72 -7.89 -45.79 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.60 Total: 11.77 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.50 Total: 8.76 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.32 Total: -65.68 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.08 Total: -24.60 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.90 -7.89 -45.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200795449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.980 kcal (2) G-P(sol) polarization free energy of solvation -37.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds