Wall clock time and date at job start Sat Apr 11 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.67286 * 2 1 4 4 O 1.21281 * 120.00018 * 117.44459 * 3 2 1 5 5 N 1.34773 * 119.99834 * 297.44761 * 3 2 1 6 6 C 1.47511 * 118.75514 * 355.03887 * 5 3 2 7 7 C 1.53573 * 111.02523 * 138.39411 * 6 5 3 8 8 C 1.51538 * 109.58286 * 320.01944 * 7 6 5 9 9 O 1.42148 * 108.75079 * 91.40033 * 8 7 6 10 10 C 1.38020 * 119.44764 * 272.77219 * 9 8 7 11 11 H 1.09004 * 109.46527 * 303.42914 * 10 9 8 12 12 C 1.52996 * 109.47425 * 183.43322 * 10 9 8 13 13 N 1.46502 * 109.47354 * 64.98593 * 12 10 9 14 14 C 1.36932 * 120.00293 * 179.72155 * 13 12 10 15 15 H 1.08002 * 119.99524 * 0.28420 * 14 13 12 16 16 C 1.38806 * 120.00205 * 180.27748 * 14 13 12 17 17 N 1.31617 * 120.00130 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47328 * 90.00398 * 18 16 14 20 20 H 1.48513 * 109.46708 * 210.00144 * 18 16 14 21 21 H 1.48496 * 109.47033 * 329.99839 * 18 16 14 22 22 C 1.45122 * 118.75790 * 175.06443 * 5 3 2 23 23 C 1.53351 * 109.67339 * 120.49534 * 2 1 3 24 24 C 1.52924 * 108.66979 * 52.23840 * 23 2 1 25 25 N 1.45745 * 110.48746 * 50.75439 * 24 23 2 26 26 C 1.33352 * 124.11068 * 340.89889 * 25 24 23 27 27 O 1.21286 * 118.24603 * 182.26642 * 26 25 24 28 28 C 1.50181 * 123.50492 * 2.26962 * 26 25 24 29 29 H 1.09001 * 109.46752 * 43.16866 * 1 2 3 30 30 H 1.09001 * 109.46972 * 163.16690 * 1 2 3 31 31 H 1.09001 * 109.46966 * 283.16978 * 1 2 3 32 32 H 1.08998 * 109.16860 * 258.78665 * 6 5 3 33 33 H 1.08995 * 109.16910 * 17.99416 * 6 5 3 34 34 H 1.08997 * 109.45528 * 80.05622 * 7 6 5 35 35 H 1.09005 * 109.45146 * 200.01464 * 7 6 5 36 36 H 1.09001 * 109.59311 * 211.18464 * 8 7 6 37 37 H 1.09002 * 109.59047 * 331.62360 * 8 7 6 38 38 H 1.09004 * 109.47197 * 304.98977 * 12 10 9 39 39 H 1.08998 * 109.47283 * 184.99314 * 12 10 9 40 40 H 0.97002 * 119.99454 * 0.02562 * 13 12 10 41 41 H 0.96999 * 120.00598 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.45920 * 149.23941 * 22 5 3 43 43 H 1.08996 * 109.44741 * 29.27279 * 22 5 3 44 44 H 1.08990 * 109.60434 * 171.99506 * 23 2 1 45 45 H 1.08996 * 109.60257 * 292.48479 * 23 2 1 46 46 H 1.09008 * 109.29586 * 171.06601 * 24 23 2 47 47 H 1.08999 * 109.30085 * 290.43657 * 24 23 2 48 48 H 0.97006 * 117.94552 * 160.92449 * 25 24 23 49 49 H 1.08999 * 109.38795 * 222.26117 * 28 26 25 50 50 H 1.09003 * 109.41597 * 102.51099 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4191 0.0000 4 8 2.6974 1.8271 0.9321 5 7 1.7576 2.2347 -1.0358 6 6 1.0486 1.6801 -2.2044 7 6 -0.0216 2.6565 -2.7140 8 6 -0.7229 3.3017 -1.5357 9 8 -0.0453 4.5067 -1.2047 10 6 1.0258 4.4660 -0.3352 11 1 0.7131 4.0125 0.6054 12 6 1.5252 5.8884 -0.0742 13 7 0.4871 6.6500 0.6247 14 6 0.7118 7.9557 0.9709 15 1 1.6526 8.4253 0.7247 16 6 -0.2697 8.6755 1.6383 17 7 -1.4161 8.1030 1.9387 18 14 0.0366 10.4569 2.1099 19 1 -0.4117 11.3450 1.0075 20 1 -0.7222 10.7793 3.3451 21 1 1.4872 10.6623 2.3523 22 6 2.1658 3.6252 -0.9596 23 6 2.0463 -0.7328 1.2443 24 6 1.3757 -2.1052 1.3176 25 7 1.5042 -2.8044 0.0452 26 6 1.7818 -2.2046 -1.1130 27 8 1.8231 -2.8848 -2.1162 28 6 2.0461 -0.7318 -1.2414 29 1 -0.3633 0.7495 -0.7031 30 1 -0.3633 -0.9836 -0.2976 31 1 -0.3633 0.2341 1.0007 32 1 1.7671 1.4889 -3.0014 33 1 0.5714 0.7419 -1.9213 34 1 0.4508 3.4279 -3.3221 35 1 -0.7501 2.1143 -3.3170 36 1 -1.7559 3.5247 -1.8026 37 1 -0.7017 2.6242 -0.6821 38 1 1.7543 6.3730 -1.0234 39 1 2.4244 5.8507 0.5407 40 1 -0.3578 6.2280 0.8461 41 1 -2.1018 8.6059 2.4054 42 1 2.3831 3.9953 -1.9615 43 1 3.0590 3.7078 -0.3403 44 1 3.1268 -0.8570 1.1735 45 1 1.7996 -0.1571 2.1363 46 1 1.8484 -2.6956 2.1025 47 1 0.3192 -1.9778 1.5537 48 1 1.3795 -3.7664 0.0406 49 1 1.5367 -0.3485 -2.1255 50 1 3.1184 -0.5634 -1.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200795450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:51 Heat of formation + Delta-G solvation = -77.308978 kcal Electronic energy + Delta-G solvation = -31833.915808 eV Core-core repulsion = 27669.486748 eV Total energy + Delta-G solvation = -4164.429060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85308 -40.15009 -38.67040 -36.97307 -36.02506 -34.62402 -34.20967 -32.83484 -30.93661 -30.25927 -28.91122 -28.36988 -26.78925 -25.66690 -24.64669 -23.41907 -22.26384 -21.70826 -20.99683 -19.41091 -18.99530 -17.92481 -17.21163 -17.10540 -16.83889 -16.41981 -16.21991 -15.85194 -15.81442 -15.12383 -15.10089 -14.66469 -14.46785 -14.22372 -14.07389 -13.55992 -13.50366 -13.21403 -13.04675 -12.94979 -12.64025 -12.55985 -12.31169 -12.21266 -12.00918 -11.91568 -11.63599 -11.57626 -11.39993 -11.18550 -10.86760 -10.78034 -10.63556 -10.52328 -10.24226 -10.01964 -9.71414 -9.61822 -9.51945 -9.42816 -8.82961 -8.61545 -6.84835 -5.69514 -2.97663 2.21715 2.37135 2.72071 2.84890 3.48040 3.52632 3.54559 3.82713 3.93416 4.00484 4.15754 4.27173 4.44472 4.51248 4.59855 4.63459 4.65798 4.81341 4.86740 4.99524 5.02791 5.13981 5.19046 5.20626 5.22523 5.35981 5.40088 5.41822 5.43852 5.52751 5.57585 5.63744 5.65445 5.75761 5.81150 5.94590 5.98010 6.07626 6.31821 6.32838 6.43278 6.65255 6.77811 6.87059 7.10927 7.74858 7.78274 7.95453 7.98499 8.48773 9.60335 10.18304 10.54172 11.53457 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.002669 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.626401 B =10487.126626 C =10919.621703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 C 0.519 3.481 4 O -0.525 6.525 5 N -0.604 5.604 6 C 0.080 3.920 7 C -0.169 4.169 8 C 0.071 3.929 9 O -0.367 6.367 10 C 0.090 3.910 11 H 0.051 0.949 12 C 0.166 3.834 13 N -0.726 5.726 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.079 3.921 23 C -0.113 4.113 24 C 0.108 3.892 25 N -0.719 5.719 26 C 0.526 3.474 27 O -0.556 6.556 28 C -0.142 4.142 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.028 0.972 39 H 0.035 0.965 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.400 0.600 49 H 0.120 0.880 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -24.134 -6.565 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.085 4.085 3 C 0.306 3.694 4 O -0.400 6.400 5 N -0.336 5.336 6 C -0.042 4.042 7 C -0.207 4.207 8 C -0.006 4.006 9 O -0.285 6.285 10 C 0.030 3.970 11 H 0.069 0.931 12 C 0.038 3.962 13 N -0.370 5.370 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.045 4.045 23 C -0.151 4.151 24 C -0.016 4.016 25 N -0.371 5.371 26 C 0.313 3.687 27 O -0.435 6.435 28 C -0.182 4.182 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.236 0.764 49 H 0.138 0.862 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.529 -23.665 -6.646 24.994 hybrid contribution -0.120 0.237 0.460 0.531 sum 4.409 -23.427 -6.186 24.628 Atomic orbital electron populations 1.22283 0.91813 1.03437 1.04296 1.20887 0.97882 0.92927 0.96838 1.20359 0.79916 0.86923 0.82203 1.90739 1.38271 1.76353 1.34645 1.47851 1.57648 1.10247 1.17890 1.22715 0.95281 0.98086 0.88137 1.22551 0.98442 0.99766 0.99990 1.22188 0.95915 0.87034 0.95433 1.86446 1.45719 1.31446 1.64910 1.22274 0.85784 0.97599 0.91379 0.93117 1.20609 0.92531 0.87306 0.95787 1.42221 1.15737 1.10604 1.68452 1.19227 0.99738 0.87891 1.29934 0.91184 1.24730 0.96349 0.98341 1.01641 1.69672 1.06039 1.36166 1.46281 0.86183 0.77234 0.85106 0.77636 1.21766 1.21834 1.20783 1.22475 0.99638 0.79425 1.02929 1.21778 1.01251 0.94176 0.97895 1.21481 1.01490 0.93577 0.85055 1.45496 1.71890 1.11838 1.07868 1.19942 0.75636 0.90328 0.82781 1.90784 1.52282 1.65044 1.35383 1.22297 1.04945 0.91480 0.99461 0.90379 0.91066 0.90684 0.91098 0.87928 0.89755 0.89566 0.89216 0.93333 0.95466 0.94777 0.77973 0.93618 0.89760 0.88646 0.90183 0.88269 0.89932 0.90936 0.76437 0.86177 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 6.91 37.16 0.26 -0.89 16 2 C -0.08 -0.67 0.49 -155.44 -0.08 -0.75 16 3 C 0.52 6.14 6.42 -10.98 -0.07 6.07 16 4 O -0.52 -8.22 15.28 5.56 0.08 -8.13 16 5 N -0.60 -6.75 2.17 -172.47 -0.37 -7.13 16 6 C 0.08 0.65 3.81 -3.19 -0.01 0.64 16 7 C -0.17 -1.51 5.76 -27.17 -0.16 -1.67 16 8 C 0.07 0.87 6.32 36.42 0.23 1.10 16 9 O -0.37 -6.28 9.38 -26.55 -0.25 -6.53 16 10 C 0.09 1.55 2.68 -25.78 -0.07 1.48 16 11 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 12 C 0.17 3.48 5.92 -4.04 -0.02 3.46 16 13 N -0.73 -19.25 5.54 -59.91 -0.33 -19.58 16 14 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 18 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.08 1.07 4.91 -3.83 -0.02 1.05 16 23 C -0.11 -0.82 4.31 -26.59 -0.11 -0.94 16 24 C 0.11 0.52 6.44 -4.49 -0.03 0.49 16 25 N -0.72 -4.56 5.28 -61.39 -0.32 -4.88 16 26 C 0.53 4.75 6.92 -11.87 -0.08 4.67 16 27 O -0.56 -7.20 17.78 5.55 0.10 -7.10 16 28 C -0.14 -1.11 4.21 -28.10 -0.12 -1.23 16 29 H 0.08 0.58 3.59 -51.93 -0.19 0.39 16 30 H 0.07 0.43 6.58 -51.93 -0.34 0.09 16 31 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 32 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 33 H 0.10 0.70 2.54 -51.93 -0.13 0.56 16 34 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.58 5.77 -51.93 -0.30 0.28 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.39 10.89 7.65 -40.82 -0.31 10.58 16 41 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 43 H 0.10 1.40 7.21 -51.93 -0.37 1.02 16 44 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 45 H 0.10 0.81 7.86 -51.93 -0.41 0.40 16 46 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 47 H 0.07 0.29 7.22 -51.93 -0.37 -0.08 16 48 H 0.40 2.12 8.80 -40.82 -0.36 1.76 16 49 H 0.12 0.84 4.60 -51.93 -0.24 0.60 16 50 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -36.66 375.11 -7.89 -44.56 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.62 Total: 7.51 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.53 Total: 5.98 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.31 Total: -59.77 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.07 Total: -21.77 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.66 -7.89 -44.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200795450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.752 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds