Wall clock time and date at job start Sat Apr 11 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.67286 * 2 1 4 4 O 1.21281 * 120.00018 * 117.44459 * 3 2 1 5 5 N 1.34773 * 119.99834 * 297.44761 * 3 2 1 6 6 C 1.47511 * 118.75514 * 355.03887 * 5 3 2 7 7 C 1.53573 * 111.02523 * 138.39411 * 6 5 3 8 8 C 1.51538 * 109.58286 * 320.01944 * 7 6 5 9 9 O 1.42148 * 108.75079 * 91.40033 * 8 7 6 10 10 C 1.38020 * 119.44764 * 272.77219 * 9 8 7 11 11 H 1.09004 * 109.46527 * 303.42914 * 10 9 8 12 12 C 1.52996 * 109.47425 * 183.43322 * 10 9 8 13 13 N 1.46502 * 109.47354 * 64.98593 * 12 10 9 14 14 C 1.36932 * 120.00293 * 179.72155 * 13 12 10 15 15 H 1.08002 * 119.99524 * 0.28420 * 14 13 12 16 16 C 1.38806 * 120.00205 * 180.27748 * 14 13 12 17 17 N 1.31617 * 120.00130 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47328 * 90.00398 * 18 16 14 20 20 H 1.48513 * 109.46708 * 210.00144 * 18 16 14 21 21 H 1.48496 * 109.47033 * 329.99839 * 18 16 14 22 22 C 1.45122 * 118.75790 * 175.06443 * 5 3 2 23 23 C 1.53351 * 109.67339 * 120.49534 * 2 1 3 24 24 C 1.52924 * 108.66979 * 52.23840 * 23 2 1 25 25 N 1.45745 * 110.48746 * 50.75439 * 24 23 2 26 26 C 1.33352 * 124.11068 * 340.89889 * 25 24 23 27 27 O 1.21286 * 118.24603 * 182.26642 * 26 25 24 28 28 C 1.50181 * 123.50492 * 2.26962 * 26 25 24 29 29 H 1.09001 * 109.46752 * 43.16866 * 1 2 3 30 30 H 1.09001 * 109.46972 * 163.16690 * 1 2 3 31 31 H 1.09001 * 109.46966 * 283.16978 * 1 2 3 32 32 H 1.08998 * 109.16860 * 258.78665 * 6 5 3 33 33 H 1.08995 * 109.16910 * 17.99416 * 6 5 3 34 34 H 1.08997 * 109.45528 * 80.05622 * 7 6 5 35 35 H 1.09005 * 109.45146 * 200.01464 * 7 6 5 36 36 H 1.09001 * 109.59311 * 211.18464 * 8 7 6 37 37 H 1.09002 * 109.59047 * 331.62360 * 8 7 6 38 38 H 1.09004 * 109.47197 * 304.98977 * 12 10 9 39 39 H 1.08998 * 109.47283 * 184.99314 * 12 10 9 40 40 H 0.97002 * 119.99454 * 0.02562 * 13 12 10 41 41 H 0.96999 * 120.00598 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.45920 * 149.23941 * 22 5 3 43 43 H 1.08996 * 109.44741 * 29.27279 * 22 5 3 44 44 H 1.08990 * 109.60434 * 171.99506 * 23 2 1 45 45 H 1.08996 * 109.60257 * 292.48479 * 23 2 1 46 46 H 1.09008 * 109.29586 * 171.06601 * 24 23 2 47 47 H 1.08999 * 109.30085 * 290.43657 * 24 23 2 48 48 H 0.97006 * 117.94552 * 160.92449 * 25 24 23 49 49 H 1.08999 * 109.38795 * 222.26117 * 28 26 25 50 50 H 1.09003 * 109.41597 * 102.51099 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4191 0.0000 4 8 2.6974 1.8271 0.9321 5 7 1.7576 2.2347 -1.0358 6 6 1.0486 1.6801 -2.2044 7 6 -0.0216 2.6565 -2.7140 8 6 -0.7229 3.3017 -1.5357 9 8 -0.0453 4.5067 -1.2047 10 6 1.0258 4.4660 -0.3352 11 1 0.7131 4.0125 0.6054 12 6 1.5252 5.8884 -0.0742 13 7 0.4871 6.6500 0.6247 14 6 0.7118 7.9557 0.9709 15 1 1.6526 8.4253 0.7247 16 6 -0.2697 8.6755 1.6383 17 7 -1.4161 8.1030 1.9387 18 14 0.0366 10.4569 2.1099 19 1 -0.4117 11.3450 1.0075 20 1 -0.7222 10.7793 3.3451 21 1 1.4872 10.6623 2.3523 22 6 2.1658 3.6252 -0.9596 23 6 2.0463 -0.7328 1.2443 24 6 1.3757 -2.1052 1.3176 25 7 1.5042 -2.8044 0.0452 26 6 1.7818 -2.2046 -1.1130 27 8 1.8231 -2.8848 -2.1162 28 6 2.0461 -0.7318 -1.2414 29 1 -0.3633 0.7495 -0.7031 30 1 -0.3633 -0.9836 -0.2976 31 1 -0.3633 0.2341 1.0007 32 1 1.7671 1.4889 -3.0014 33 1 0.5714 0.7419 -1.9213 34 1 0.4508 3.4279 -3.3221 35 1 -0.7501 2.1143 -3.3170 36 1 -1.7559 3.5247 -1.8026 37 1 -0.7017 2.6242 -0.6821 38 1 1.7543 6.3730 -1.0234 39 1 2.4244 5.8507 0.5407 40 1 -0.3578 6.2280 0.8461 41 1 -2.1018 8.6059 2.4054 42 1 2.3831 3.9953 -1.9615 43 1 3.0590 3.7078 -0.3403 44 1 3.1268 -0.8570 1.1735 45 1 1.7996 -0.1571 2.1363 46 1 1.8484 -2.6956 2.1025 47 1 0.3192 -1.9778 1.5537 48 1 1.3795 -3.7664 0.0406 49 1 1.5367 -0.3485 -2.1255 50 1 3.1184 -0.5634 -1.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200795450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:50 Heat of formation + Delta-G solvation = -105.416525 kcal Electronic energy + Delta-G solvation = -31835.134642 eV Core-core repulsion = 27669.486748 eV Total energy + Delta-G solvation = -4165.647895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.64919 -41.03095 -39.76652 -37.75791 -37.11140 -36.33701 -34.96684 -34.19697 -32.68201 -30.92008 -30.23694 -29.03531 -27.86733 -26.92219 -25.60344 -24.71788 -23.51075 -22.66410 -22.32529 -20.28557 -19.62668 -19.25834 -18.66693 -17.93996 -17.89743 -17.46456 -17.00144 -16.94472 -16.66070 -16.38700 -16.03707 -15.82543 -15.58508 -15.20263 -15.14208 -14.82584 -14.72626 -14.39296 -14.29859 -13.97080 -13.77509 -13.48422 -13.26536 -13.16557 -13.06573 -12.79246 -12.75876 -12.61670 -12.55604 -12.33497 -12.22655 -12.09662 -12.04372 -11.84618 -11.59335 -11.35007 -11.27047 -10.97778 -10.58491 -10.51179 -10.07885 -9.67609 -9.01208 -7.94143 -5.23760 1.42777 1.47054 1.49868 1.55325 1.58186 1.83204 2.29314 2.56364 2.72663 3.11180 3.36716 3.39442 3.53832 3.62324 3.66743 3.78008 3.82352 3.94157 4.04854 4.07086 4.12821 4.19755 4.33616 4.37211 4.39414 4.45610 4.49284 4.56436 4.63912 4.65311 4.67289 4.76828 4.80275 4.87182 4.88553 4.96074 5.05857 5.08736 5.12168 5.17657 5.23563 5.47306 5.48676 5.80705 6.20868 6.26645 6.27921 6.75602 7.02764 7.16272 7.32954 8.06942 8.32118 9.29703 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.002669 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.626401 B =10487.126626 C =10919.621703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.073 4.073 3 C 0.514 3.486 4 O -0.570 6.570 5 N -0.602 5.602 6 C 0.076 3.924 7 C -0.159 4.159 8 C 0.061 3.939 9 O -0.396 6.396 10 C 0.107 3.893 11 H 0.023 0.977 12 C 0.162 3.838 13 N -0.740 5.740 14 C -0.247 4.247 15 H 0.077 0.923 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.978 3.022 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.269 1.269 22 C 0.092 3.908 23 C -0.114 4.114 24 C 0.112 3.888 25 N -0.707 5.707 26 C 0.527 3.473 27 O -0.599 6.599 28 C -0.137 4.137 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.408 0.592 49 H 0.132 0.868 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -25.516 -7.585 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.076 4.076 3 C 0.303 3.697 4 O -0.448 6.448 5 N -0.333 5.333 6 C -0.045 4.045 7 C -0.197 4.197 8 C -0.014 4.014 9 O -0.315 6.315 10 C 0.046 3.954 11 H 0.041 0.959 12 C 0.035 3.965 13 N -0.383 5.383 14 C -0.379 4.379 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.194 1.194 22 C -0.033 4.033 23 C -0.152 4.152 24 C -0.011 4.011 25 N -0.358 5.358 26 C 0.315 3.685 27 O -0.481 6.481 28 C -0.176 4.176 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.107 0.893 48 H 0.245 0.755 49 H 0.150 0.850 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.603 -25.082 -7.681 26.632 hybrid contribution -0.145 0.633 0.786 1.020 sum 4.458 -24.449 -6.895 25.790 Atomic orbital electron populations 1.22291 0.90637 1.04375 1.04314 1.20851 0.98593 0.90456 0.97712 1.21035 0.79025 0.88246 0.81393 1.90718 1.40323 1.77479 1.36308 1.47930 1.57510 1.09093 1.18810 1.23002 0.95580 0.98313 0.87557 1.22478 0.98978 0.99731 0.98552 1.22484 0.96271 0.85730 0.96943 1.86367 1.46028 1.34532 1.64621 1.21869 0.87245 0.95428 0.90818 0.95938 1.20753 0.91397 0.89236 0.95116 1.42421 1.16341 1.10487 1.69002 1.19665 0.99913 0.88999 1.29308 0.90494 1.25625 0.96255 1.02844 1.02202 1.69840 1.06973 1.37807 1.47445 0.85079 0.77638 0.79678 0.76981 1.21218 1.22048 1.19354 1.22144 0.97414 0.80612 1.03101 1.21773 1.01052 0.95412 0.97002 1.21588 1.02472 0.92248 0.84782 1.45471 1.70346 1.12374 1.07643 1.20034 0.75240 0.90440 0.82802 1.90774 1.54540 1.65861 1.36904 1.22266 1.05099 0.90819 0.99437 0.90428 0.89364 0.90902 0.88817 0.86145 0.90501 0.86162 0.88643 0.93190 0.95055 0.94695 0.79480 0.93991 0.88038 0.89943 0.91008 0.89324 0.87555 0.89274 0.75544 0.84990 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 6.91 71.98 0.50 -1.42 16 2 C -0.07 -1.09 0.49 -52.79 -0.03 -1.11 16 3 C 0.51 11.94 6.42 87.66 0.56 12.51 16 4 O -0.57 -18.30 15.28 -3.03 -0.05 -18.35 16 5 N -0.60 -12.84 2.17 -817.98 -1.78 -14.62 16 6 C 0.08 1.03 3.81 86.38 0.33 1.36 16 7 C -0.16 -2.42 5.76 30.31 0.17 -2.25 16 8 C 0.06 1.45 6.32 71.50 0.45 1.90 16 9 O -0.40 -13.67 9.38 -117.92 -1.11 -14.78 16 10 C 0.11 3.78 2.68 31.21 0.08 3.86 16 11 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 12 C 0.16 6.98 5.92 86.38 0.51 7.49 16 13 N -0.74 -40.41 5.54 -343.46 -1.90 -42.31 16 14 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 15 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 16 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 17 N -0.97 -61.41 13.06 21.65 0.28 -61.13 16 18 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 C 0.09 2.49 4.91 87.25 0.43 2.92 16 23 C -0.11 -1.53 4.31 30.69 0.13 -1.40 16 24 C 0.11 0.79 6.44 86.50 0.56 1.35 16 25 N -0.71 -7.21 5.28 -467.31 -2.47 -9.68 16 26 C 0.53 8.43 6.92 87.72 0.61 9.04 16 27 O -0.60 -14.57 17.78 -3.05 -0.05 -14.62 16 28 C -0.14 -1.84 4.21 29.71 0.13 -1.72 16 29 H 0.08 0.96 3.59 -2.39 -0.01 0.95 16 30 H 0.09 0.79 6.58 -2.39 -0.02 0.78 16 31 H 0.07 0.94 8.04 -2.39 -0.02 0.92 16 32 H 0.09 0.96 7.95 -2.39 -0.02 0.94 16 33 H 0.12 1.24 2.54 -2.39 -0.01 1.24 16 34 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 35 H 0.12 1.07 8.14 -2.38 -0.02 1.06 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.15 5.77 -2.39 -0.01 1.14 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.37 21.92 7.65 -92.71 -0.71 21.21 16 41 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.10 2.40 8.11 -2.39 -0.02 2.38 16 43 H 0.08 2.47 7.21 -2.39 -0.02 2.45 16 44 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 45 H 0.09 1.41 7.86 -2.39 -0.02 1.39 16 46 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 47 H 0.09 0.42 7.22 -2.39 -0.02 0.41 16 48 H 0.41 3.29 8.80 -92.70 -0.82 2.47 16 49 H 0.13 1.44 4.60 -2.39 -0.01 1.43 16 50 H 0.11 1.49 8.09 -2.39 -0.02 1.47 16 Total: -1.00 -81.86 375.11 0.16 -81.70 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.54 Total: 29.61 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 5.74 Total: 14.76 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -5.87 Total: -127.74 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.21 Total: -47.75 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -81.86 0.16 -81.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200795450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.717 kcal (2) G-P(sol) polarization free energy of solvation -81.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds