Wall clock time and date at job start Sat Apr 11 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.67210 * 2 1 4 4 O 1.21277 * 119.99817 * 130.54322 * 3 2 1 5 5 N 1.34779 * 119.99766 * 310.53907 * 3 2 1 6 6 C 1.47502 * 118.76059 * 355.44814 * 5 3 2 7 7 C 1.53574 * 111.02960 * 221.64909 * 6 5 3 8 8 C 1.51539 * 109.58036 * 39.97757 * 7 6 5 9 9 O 1.42149 * 108.75596 * 268.60088 * 8 7 6 10 10 C 1.38018 * 119.44149 * 87.23005 * 9 8 7 11 11 H 1.09003 * 109.46619 * 56.56652 * 10 9 8 12 12 C 1.53001 * 109.46905 * 176.56792 * 10 9 8 13 13 N 1.46495 * 109.46958 * 299.99729 * 12 10 9 14 14 C 1.36940 * 120.00066 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99414 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00342 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00228 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00067 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47252 * 90.00293 * 18 16 14 20 20 H 1.48506 * 109.47367 * 209.99941 * 18 16 14 21 21 H 1.48502 * 109.47186 * 329.99870 * 18 16 14 22 22 C 1.45124 * 118.75357 * 175.46908 * 5 3 2 23 23 C 1.53340 * 109.67192 * 120.49898 * 2 1 3 24 24 C 1.52898 * 108.69601 * 52.28439 * 23 2 1 25 25 N 1.45748 * 110.51834 * 50.66438 * 24 23 2 26 26 C 1.33356 * 124.11132 * 340.99316 * 25 24 23 27 27 O 1.21285 * 118.24847 * 182.22415 * 26 25 24 28 28 C 1.50180 * 123.50608 * 2.19687 * 26 25 24 29 29 H 1.09004 * 109.47040 * 59.99585 * 1 2 3 30 30 H 1.08998 * 109.47720 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46832 * 300.00601 * 1 2 3 32 32 H 1.09001 * 109.16794 * 342.05108 * 6 5 3 33 33 H 1.09004 * 109.16662 * 101.25251 * 6 5 3 34 34 H 1.08995 * 109.45063 * 279.94603 * 7 6 5 35 35 H 1.09001 * 109.44896 * 160.01369 * 7 6 5 36 36 H 1.09004 * 109.58622 * 148.81473 * 8 7 6 37 37 H 1.09002 * 109.58670 * 28.38407 * 8 7 6 38 38 H 1.08991 * 109.47297 * 60.00083 * 12 10 9 39 39 H 1.08998 * 109.46613 * 180.02562 * 12 10 9 40 40 H 0.96999 * 120.00459 * 0.02562 * 13 12 10 41 41 H 0.97000 * 120.00534 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46236 * 330.67280 * 22 5 3 43 43 H 1.08998 * 109.44926 * 210.70795 * 22 5 3 44 44 H 1.09002 * 109.60310 * 171.99295 * 23 2 1 45 45 H 1.09004 * 109.60402 * 292.47775 * 23 2 1 46 46 H 1.09006 * 109.25053 * 290.36840 * 24 23 2 47 47 H 1.08991 * 109.14993 * 170.90475 * 24 23 2 48 48 H 0.97001 * 117.94508 * 160.96370 * 25 24 23 49 49 H 1.09002 * 109.40011 * 222.29095 * 28 26 25 50 50 H 1.08996 * 109.40225 * 102.54963 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4190 0.0000 4 8 2.8843 1.7602 0.7981 5 7 1.5498 2.3090 -0.8871 6 6 0.5963 1.8411 -1.9106 7 6 0.9028 2.4700 -3.2778 8 6 2.4026 2.5203 -3.4889 9 8 2.8896 3.7679 -3.0126 10 6 3.2372 3.8977 -1.6832 11 1 3.9879 3.1494 -1.4293 12 6 3.8081 5.2962 -1.4396 13 7 4.9949 5.4915 -2.2760 14 6 5.6797 6.6764 -2.2269 15 1 5.3449 7.4667 -1.5712 16 6 6.8038 6.8618 -3.0197 17 7 7.4617 8.0008 -2.9729 18 14 7.3831 5.4947 -4.1532 19 1 6.7299 5.6406 -5.4788 20 1 8.8569 5.5776 -4.3159 21 1 7.0233 4.1790 -3.5660 22 6 1.9832 3.6912 -0.7993 23 6 2.0462 -0.7328 1.2441 24 6 1.3769 -2.1056 1.3173 25 7 1.5041 -2.8044 0.0446 26 6 1.7815 -2.2044 -1.1136 27 8 1.8224 -2.8844 -2.1170 28 6 2.0453 -0.7315 -1.2419 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.6629 0.7563 -1.9927 33 1 -0.4149 2.1149 -1.6095 34 1 0.4974 3.4812 -3.3112 35 1 0.4454 1.8696 -4.0642 36 1 2.6255 2.4223 -4.5513 37 1 2.8766 1.7083 -2.9374 38 1 3.0575 6.0444 -1.6936 39 1 4.0830 5.3985 -0.3899 40 1 5.2957 4.7816 -2.8646 41 1 8.2475 8.1303 -3.5266 42 1 2.2253 3.9308 0.2361 43 1 1.1830 4.3451 -1.1458 44 1 3.1268 -0.8571 1.1733 45 1 1.7996 -0.1571 2.1363 46 1 0.3206 -1.9782 1.5544 47 1 1.8536 -2.6944 2.1009 48 1 1.3795 -3.7664 0.0398 49 1 1.5354 -0.3480 -2.1257 50 1 3.1175 -0.5632 -1.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200795451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:56 Heat of formation + Delta-G solvation = -69.224396 kcal Electronic energy + Delta-G solvation = -31978.275181 eV Core-core repulsion = 27814.196695 eV Total energy + Delta-G solvation = -4164.078486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90361 -40.22319 -38.78392 -37.03563 -36.13956 -34.78388 -34.26871 -32.88650 -31.16257 -30.29662 -29.32550 -28.52242 -26.73240 -25.91696 -24.73916 -23.41750 -22.01337 -21.75796 -21.05058 -19.59569 -19.05846 -17.95927 -17.66565 -17.22806 -16.81259 -16.60201 -16.45229 -16.05933 -15.55724 -15.21564 -15.06759 -14.85873 -14.43337 -14.33836 -14.02159 -13.85810 -13.56586 -13.48431 -13.21995 -12.88864 -12.73213 -12.54867 -12.29479 -12.24170 -12.10583 -11.98293 -11.81866 -11.63074 -11.48090 -11.30935 -11.08886 -10.80260 -10.70831 -10.57252 -10.33044 -10.07240 -9.72957 -9.56657 -9.54176 -9.52303 -8.83643 -8.71723 -7.14742 -5.69805 -3.04131 2.17092 2.29859 2.63708 2.79966 3.45369 3.49992 3.51736 3.75285 3.81820 3.94555 4.07820 4.21042 4.34277 4.43529 4.52060 4.57510 4.67517 4.70806 4.76978 4.92921 4.97114 5.04153 5.08866 5.14450 5.17748 5.26361 5.29593 5.32165 5.36037 5.46745 5.47231 5.56071 5.60265 5.69595 5.70197 5.78847 5.86127 5.95764 5.99862 6.28096 6.33900 6.56507 6.68112 6.82472 7.02606 7.74885 7.83657 7.88242 8.06304 8.49344 9.29254 10.01843 10.22671 11.48714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.003018 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.236563 B = 9274.880479 C = 9420.249788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C 0.518 3.482 4 O -0.523 6.523 5 N -0.604 5.604 6 C 0.085 3.915 7 C -0.170 4.170 8 C 0.071 3.929 9 O -0.371 6.371 10 C 0.084 3.916 11 H 0.052 0.948 12 C 0.171 3.829 13 N -0.750 5.750 14 C -0.241 4.241 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.936 5.936 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.278 1.278 22 C 0.082 3.918 23 C -0.113 4.113 24 C 0.109 3.891 25 N -0.719 5.719 26 C 0.528 3.472 27 O -0.553 6.553 28 C -0.135 4.135 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.365 0.635 41 H 0.259 0.741 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.401 0.599 49 H 0.115 0.885 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.042 -22.636 7.781 31.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.085 4.085 3 C 0.305 3.695 4 O -0.398 6.398 5 N -0.337 5.337 6 C -0.036 4.036 7 C -0.209 4.209 8 C -0.006 4.006 9 O -0.289 6.289 10 C 0.024 3.976 11 H 0.069 0.931 12 C 0.043 3.957 13 N -0.395 5.395 14 C -0.371 4.371 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.584 5.584 18 Si 0.717 3.283 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.205 1.205 22 C -0.041 4.041 23 C -0.151 4.151 24 C -0.016 4.016 25 N -0.372 5.372 26 C 0.314 3.686 27 O -0.431 6.431 28 C -0.174 4.174 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.236 0.764 49 H 0.132 0.868 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.467 -22.139 7.646 31.105 hybrid contribution 0.354 -1.444 -0.568 1.592 sum -20.112 -23.584 7.077 31.793 Atomic orbital electron populations 1.22564 0.92041 1.03722 1.04683 1.20870 0.97847 0.92869 0.96897 1.20400 0.81620 0.86748 0.80748 1.90755 1.30630 1.79263 1.39189 1.47874 1.45288 1.09327 1.31202 1.22730 0.92464 1.00348 0.88103 1.22566 0.98846 1.03268 0.96179 1.22156 0.92074 0.86630 0.99706 1.86428 1.83573 1.32911 1.25948 1.22336 0.93955 0.99767 0.81539 0.93056 1.20589 0.89442 0.90705 0.94941 1.42548 1.30257 1.16665 1.50048 1.19059 1.05913 0.91577 1.20505 0.89202 1.24639 0.97934 0.96767 0.99843 1.69705 1.21108 1.23905 1.43731 0.86507 0.77753 0.82439 0.81607 1.21020 1.21863 1.20465 1.22428 0.98072 0.80953 1.02696 1.21749 1.01681 0.94129 0.97518 1.21477 1.01276 0.93628 0.85181 1.45474 1.72061 1.11862 1.07772 1.19870 0.75645 0.90211 0.82827 1.90796 1.51986 1.64974 1.35348 1.22022 1.04997 0.91571 0.98855 0.89574 0.91119 0.91181 0.88267 0.90884 0.89640 0.89454 0.89142 0.93545 0.94718 0.93966 0.80257 0.93131 0.88707 0.89552 0.89839 0.88680 0.90992 0.89938 0.76362 0.86767 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 7.37 37.16 0.27 -0.63 16 2 C -0.08 -0.61 0.49 -155.45 -0.08 -0.69 16 3 C 0.52 5.72 6.41 -10.98 -0.07 5.65 16 4 O -0.52 -7.85 15.51 5.56 0.09 -7.76 16 5 N -0.60 -6.23 2.18 -172.47 -0.38 -6.61 16 6 C 0.09 0.62 4.13 -3.20 -0.01 0.60 16 7 C -0.17 -1.42 5.79 -27.17 -0.16 -1.58 16 8 C 0.07 0.84 6.37 36.42 0.23 1.08 16 9 O -0.37 -6.05 9.18 -26.55 -0.24 -6.29 16 10 C 0.08 1.39 2.73 -25.78 -0.07 1.32 16 11 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 12 C 0.17 3.46 5.95 -4.04 -0.02 3.43 16 13 N -0.75 -18.94 5.29 -59.92 -0.32 -19.25 16 14 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 15 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 16 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 17 N -0.94 -30.24 13.97 55.49 0.78 -29.46 16 18 Si 0.89 23.24 27.73 -169.99 -4.71 18.52 16 19 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 22 C 0.08 1.04 4.83 -3.83 -0.02 1.02 16 23 C -0.11 -0.75 4.27 -26.61 -0.11 -0.86 16 24 C 0.11 0.45 6.38 -4.50 -0.03 0.42 16 25 N -0.72 -4.39 5.24 -61.40 -0.32 -4.71 16 26 C 0.53 4.83 7.15 -11.87 -0.08 4.75 16 27 O -0.55 -7.33 17.78 5.55 0.10 -7.23 16 28 C -0.13 -1.10 4.52 -28.10 -0.13 -1.23 16 29 H 0.09 0.40 3.74 -51.93 -0.19 0.21 16 30 H 0.07 0.32 5.90 -51.93 -0.31 0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.60 2.39 -51.93 -0.12 0.47 16 33 H 0.07 0.41 7.42 -51.93 -0.39 0.02 16 34 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.54 7.40 -51.93 -0.38 0.16 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.36 9.21 5.39 -40.82 -0.22 8.99 16 41 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 42 H 0.09 1.28 7.34 -51.93 -0.38 0.90 16 43 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 44 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 45 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 46 H 0.07 0.20 6.87 -51.93 -0.36 -0.15 16 47 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.40 2.03 8.80 -40.82 -0.36 1.67 16 49 H 0.11 0.84 5.35 -51.93 -0.28 0.56 16 50 H 0.11 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -37.97 374.39 -7.54 -45.51 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.64 Total: 5.60 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.53 Total: 6.05 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.24 Total: -60.03 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.06 Total: -21.29 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.97 -7.54 -45.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200795451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.714 kcal (2) G-P(sol) polarization free energy of solvation -37.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds