Wall clock time and date at job start Sat Apr 11 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.67210 * 2 1 4 4 O 1.21277 * 119.99817 * 130.54322 * 3 2 1 5 5 N 1.34779 * 119.99766 * 310.53907 * 3 2 1 6 6 C 1.47502 * 118.76059 * 355.44814 * 5 3 2 7 7 C 1.53574 * 111.02960 * 221.64909 * 6 5 3 8 8 C 1.51539 * 109.58036 * 39.97757 * 7 6 5 9 9 O 1.42149 * 108.75596 * 268.60088 * 8 7 6 10 10 C 1.38018 * 119.44149 * 87.23005 * 9 8 7 11 11 H 1.09003 * 109.46619 * 56.56652 * 10 9 8 12 12 C 1.53001 * 109.46905 * 176.56792 * 10 9 8 13 13 N 1.46495 * 109.46958 * 299.99729 * 12 10 9 14 14 C 1.36940 * 120.00066 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99414 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00342 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00228 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00067 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47252 * 90.00293 * 18 16 14 20 20 H 1.48506 * 109.47367 * 209.99941 * 18 16 14 21 21 H 1.48502 * 109.47186 * 329.99870 * 18 16 14 22 22 C 1.45124 * 118.75357 * 175.46908 * 5 3 2 23 23 C 1.53340 * 109.67192 * 120.49898 * 2 1 3 24 24 C 1.52898 * 108.69601 * 52.28439 * 23 2 1 25 25 N 1.45748 * 110.51834 * 50.66438 * 24 23 2 26 26 C 1.33356 * 124.11132 * 340.99316 * 25 24 23 27 27 O 1.21285 * 118.24847 * 182.22415 * 26 25 24 28 28 C 1.50180 * 123.50608 * 2.19687 * 26 25 24 29 29 H 1.09004 * 109.47040 * 59.99585 * 1 2 3 30 30 H 1.08998 * 109.47720 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46832 * 300.00601 * 1 2 3 32 32 H 1.09001 * 109.16794 * 342.05108 * 6 5 3 33 33 H 1.09004 * 109.16662 * 101.25251 * 6 5 3 34 34 H 1.08995 * 109.45063 * 279.94603 * 7 6 5 35 35 H 1.09001 * 109.44896 * 160.01369 * 7 6 5 36 36 H 1.09004 * 109.58622 * 148.81473 * 8 7 6 37 37 H 1.09002 * 109.58670 * 28.38407 * 8 7 6 38 38 H 1.08991 * 109.47297 * 60.00083 * 12 10 9 39 39 H 1.08998 * 109.46613 * 180.02562 * 12 10 9 40 40 H 0.96999 * 120.00459 * 0.02562 * 13 12 10 41 41 H 0.97000 * 120.00534 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46236 * 330.67280 * 22 5 3 43 43 H 1.08998 * 109.44926 * 210.70795 * 22 5 3 44 44 H 1.09002 * 109.60310 * 171.99295 * 23 2 1 45 45 H 1.09004 * 109.60402 * 292.47775 * 23 2 1 46 46 H 1.09006 * 109.25053 * 290.36840 * 24 23 2 47 47 H 1.08991 * 109.14993 * 170.90475 * 24 23 2 48 48 H 0.97001 * 117.94508 * 160.96370 * 25 24 23 49 49 H 1.09002 * 109.40011 * 222.29095 * 28 26 25 50 50 H 1.08996 * 109.40225 * 102.54963 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4190 0.0000 4 8 2.8843 1.7602 0.7981 5 7 1.5498 2.3090 -0.8871 6 6 0.5963 1.8411 -1.9106 7 6 0.9028 2.4700 -3.2778 8 6 2.4026 2.5203 -3.4889 9 8 2.8896 3.7679 -3.0126 10 6 3.2372 3.8977 -1.6832 11 1 3.9879 3.1494 -1.4293 12 6 3.8081 5.2962 -1.4396 13 7 4.9949 5.4915 -2.2760 14 6 5.6797 6.6764 -2.2269 15 1 5.3449 7.4667 -1.5712 16 6 6.8038 6.8618 -3.0197 17 7 7.4617 8.0008 -2.9729 18 14 7.3831 5.4947 -4.1532 19 1 6.7299 5.6406 -5.4788 20 1 8.8569 5.5776 -4.3159 21 1 7.0233 4.1790 -3.5660 22 6 1.9832 3.6912 -0.7993 23 6 2.0462 -0.7328 1.2441 24 6 1.3769 -2.1056 1.3173 25 7 1.5041 -2.8044 0.0446 26 6 1.7815 -2.2044 -1.1136 27 8 1.8224 -2.8844 -2.1170 28 6 2.0453 -0.7315 -1.2419 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.6629 0.7563 -1.9927 33 1 -0.4149 2.1149 -1.6095 34 1 0.4974 3.4812 -3.3112 35 1 0.4454 1.8696 -4.0642 36 1 2.6255 2.4223 -4.5513 37 1 2.8766 1.7083 -2.9374 38 1 3.0575 6.0444 -1.6936 39 1 4.0830 5.3985 -0.3899 40 1 5.2957 4.7816 -2.8646 41 1 8.2475 8.1303 -3.5266 42 1 2.2253 3.9308 0.2361 43 1 1.1830 4.3451 -1.1458 44 1 3.1268 -0.8571 1.1733 45 1 1.7996 -0.1571 2.1363 46 1 0.3206 -1.9782 1.5544 47 1 1.8536 -2.6944 2.1009 48 1 1.3795 -3.7664 0.0398 49 1 1.5354 -0.3480 -2.1257 50 1 3.1175 -0.5632 -1.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200795451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:55 Heat of formation + Delta-G solvation = -98.951115 kcal Electronic energy + Delta-G solvation = -31979.564228 eV Core-core repulsion = 27814.196695 eV Total energy + Delta-G solvation = -4165.367533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.63870 -41.07079 -39.82153 -37.78192 -37.19459 -36.44815 -34.96433 -34.25281 -33.01180 -30.91426 -30.54871 -29.21091 -27.65433 -27.07893 -25.53341 -24.59631 -23.44546 -22.62164 -22.38243 -20.40556 -19.81827 -19.63441 -18.66198 -17.95404 -17.82610 -17.53870 -17.34644 -16.91766 -16.44199 -16.39455 -16.07690 -15.88841 -15.60088 -15.32698 -15.10082 -14.92198 -14.68846 -14.59430 -14.30529 -14.05038 -13.86601 -13.81037 -13.35228 -13.30909 -12.87596 -12.82517 -12.76722 -12.64391 -12.49279 -12.39784 -12.24903 -12.10174 -12.04634 -11.86368 -11.61623 -11.38045 -11.27882 -11.03940 -10.58485 -10.55608 -10.09836 -9.68959 -9.33125 -8.05456 -5.38173 1.34335 1.37470 1.40555 1.44722 1.52323 1.82767 2.26092 2.45665 2.65991 3.11027 3.26238 3.37375 3.45411 3.53316 3.62776 3.73501 3.84699 3.87806 4.01368 4.05242 4.10272 4.12835 4.23433 4.32620 4.38945 4.42674 4.49032 4.52101 4.63865 4.66797 4.70738 4.80116 4.83423 4.84954 4.88112 4.96067 5.05387 5.09216 5.10007 5.17797 5.27158 5.47633 5.71345 5.78859 6.18032 6.21406 6.24176 6.68427 7.02822 7.04632 7.12893 7.80556 8.00255 9.16102 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.003018 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.236563 B = 9274.880479 C = 9420.249788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C 0.514 3.486 4 O -0.570 6.570 5 N -0.602 5.602 6 C 0.081 3.919 7 C -0.163 4.163 8 C 0.060 3.940 9 O -0.397 6.397 10 C 0.099 3.901 11 H 0.027 0.973 12 C 0.165 3.835 13 N -0.754 5.754 14 C -0.234 4.234 15 H 0.061 0.939 16 C -0.061 4.061 17 N -0.982 5.982 18 Si 0.956 3.044 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.264 1.264 22 C 0.094 3.906 23 C -0.115 4.115 24 C 0.112 3.888 25 N -0.707 5.707 26 C 0.529 3.471 27 O -0.599 6.599 28 C -0.132 4.132 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.365 0.635 41 H 0.259 0.741 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.409 0.591 49 H 0.125 0.875 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.983 -25.399 7.607 35.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.075 4.075 3 C 0.303 3.697 4 O -0.449 6.449 5 N -0.333 5.333 6 C -0.038 4.038 7 C -0.200 4.200 8 C -0.015 4.015 9 O -0.316 6.316 10 C 0.039 3.961 11 H 0.045 0.955 12 C 0.039 3.961 13 N -0.400 5.400 14 C -0.365 4.365 15 H 0.079 0.921 16 C -0.253 4.253 17 N -0.633 5.633 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.218 1.218 21 H -0.189 1.189 22 C -0.031 4.031 23 C -0.153 4.153 24 C -0.011 4.011 25 N -0.358 5.358 26 C 0.316 3.684 27 O -0.481 6.481 28 C -0.172 4.172 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.198 0.802 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.245 0.755 49 H 0.143 0.857 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.482 -24.946 7.507 35.073 hybrid contribution 1.243 -0.541 -0.439 1.425 sum -22.239 -25.487 7.068 34.556 Atomic orbital electron populations 1.22582 0.89566 1.04880 1.05593 1.20852 0.99606 0.90152 0.96920 1.21068 0.80719 0.88027 0.79919 1.90735 1.32710 1.80285 1.41157 1.47953 1.45406 1.08214 1.31730 1.23041 0.92989 1.01111 0.86707 1.22513 0.95961 1.03797 0.97772 1.22459 0.94582 0.84677 0.99814 1.86352 1.84208 1.35479 1.25542 1.21951 0.95041 0.96235 0.82855 0.95548 1.20750 0.87905 0.93606 0.93887 1.42581 1.31426 1.15197 1.50756 1.19076 1.05988 0.92245 1.19221 0.92102 1.25445 0.98389 0.99412 1.02043 1.69870 1.21899 1.26256 1.45231 0.85397 0.77021 0.79758 0.79492 1.20137 1.21770 1.18917 1.22123 0.96845 0.83028 1.01064 1.21759 1.00671 0.95648 0.97216 1.21650 1.02803 0.92155 0.84517 1.45459 1.70291 1.12419 1.07610 1.19923 0.75286 0.90206 0.82964 1.90779 1.54434 1.65835 1.37072 1.21979 1.04145 0.91404 0.99655 0.88568 0.89792 0.90434 0.86765 0.87832 0.90152 0.86292 0.88451 0.93838 0.94337 0.94232 0.80193 0.93213 0.89853 0.87678 0.92022 0.88540 0.88345 0.87755 0.75474 0.85723 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 7.37 71.98 0.53 -0.59 16 2 C -0.07 -0.93 0.49 -52.79 -0.03 -0.96 16 3 C 0.51 10.83 6.41 87.66 0.56 11.39 16 4 O -0.57 -17.36 15.51 -3.02 -0.05 -17.40 16 5 N -0.60 -11.32 2.18 -817.97 -1.79 -13.10 16 6 C 0.08 0.89 4.13 86.38 0.36 1.25 16 7 C -0.16 -2.16 5.79 30.31 0.18 -1.99 16 8 C 0.06 1.33 6.37 71.50 0.46 1.78 16 9 O -0.40 -12.65 9.18 -117.90 -1.08 -13.73 16 10 C 0.10 3.28 2.73 31.21 0.09 3.37 16 11 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 12 C 0.17 6.80 5.95 86.38 0.51 7.32 16 13 N -0.75 -38.62 5.29 -343.47 -1.82 -40.44 16 14 C -0.23 -14.19 10.47 84.03 0.88 -13.31 16 15 H 0.06 3.96 8.06 -2.91 -0.02 3.93 16 16 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 17 N -0.98 -65.07 13.97 21.65 0.30 -64.76 16 18 Si 0.96 48.59 27.73 68.60 1.90 50.50 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.26 -12.62 6.52 99.48 0.65 -11.97 16 22 C 0.09 2.31 4.83 87.25 0.42 2.73 16 23 C -0.11 -1.33 4.27 30.67 0.13 -1.20 16 24 C 0.11 0.57 6.38 86.49 0.55 1.12 16 25 N -0.71 -6.82 5.24 -467.36 -2.45 -9.27 16 26 C 0.53 8.80 7.15 87.71 0.63 9.43 16 27 O -0.60 -15.29 17.78 -3.05 -0.05 -15.34 16 28 C -0.13 -1.96 4.52 29.71 0.13 -1.83 16 29 H 0.10 0.45 3.74 -2.38 -0.01 0.44 16 30 H 0.08 0.38 5.90 -2.39 -0.01 0.37 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.94 2.39 -2.39 -0.01 0.93 16 33 H 0.10 0.62 7.42 -2.39 -0.02 0.60 16 34 H 0.08 1.22 8.01 -2.39 -0.02 1.20 16 35 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 0.97 7.40 -2.39 -0.02 0.95 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.37 18.42 5.39 -92.71 -0.50 17.92 16 41 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 42 H 0.08 2.26 7.34 -2.39 -0.02 2.24 16 43 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 44 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 45 H 0.10 1.12 8.06 -2.39 -0.02 1.10 16 46 H 0.10 0.10 6.87 -2.38 -0.02 0.08 16 47 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.41 3.09 8.80 -92.71 -0.82 2.27 16 49 H 0.13 1.53 5.35 -2.39 -0.01 1.51 16 50 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 Total: -1.00 -86.16 374.39 0.44 -85.71 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.39 Total: 22.66 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.87 Total: 15.19 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -5.75 Total: -127.58 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -1.18 Total: -46.48 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.90 Total: 50.50 kcal Total: -86.16 0.44 -85.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200795451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.239 kcal (2) G-P(sol) polarization free energy of solvation -86.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds