Wall clock time and date at job start Sat Apr 11 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 110.45903 * 2 1 4 4 O 1.21281 * 119.99876 * 113.01249 * 3 2 1 5 5 N 1.34777 * 119.99873 * 293.28867 * 3 2 1 6 6 C 1.46927 * 120.62678 * 4.12487 * 5 3 2 7 7 C 1.52762 * 109.00375 * 233.57867 * 6 5 3 8 8 C 1.53037 * 109.38568 * 305.59157 * 7 6 5 9 9 N 1.46901 * 109.46072 * 181.26286 * 8 7 6 10 10 C 1.46893 * 111.00256 * 84.92847 * 9 8 7 11 11 C 1.50705 * 109.47177 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99700 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00037 * 179.97438 * 11 10 9 14 14 C 1.37095 * 120.00099 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99932 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99959 * 180.02562 * 14 13 11 17 17 N 1.31409 * 119.99653 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47105 * 59.99464 * 18 16 14 20 20 H 1.48495 * 109.47129 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46988 * 299.99349 * 18 16 14 22 22 C 1.53033 * 109.53821 * 61.24013 * 8 7 6 23 23 C 1.46918 * 120.63062 * 184.40193 * 5 3 2 24 24 C 1.54508 * 110.51108 * 237.39470 * 2 1 3 25 25 C 1.54802 * 103.91197 * 241.18422 * 24 2 1 26 26 O 1.44422 * 104.85948 * 336.12001 * 25 24 2 27 27 C 1.44433 * 105.27544 * 40.45827 * 26 25 24 28 28 H 1.08992 * 109.47046 * 65.55389 * 1 2 3 29 29 H 1.09000 * 109.47176 * 185.55235 * 1 2 3 30 30 H 1.09005 * 109.47162 * 305.55203 * 1 2 3 31 31 H 1.09002 * 109.59065 * 353.41400 * 6 5 3 32 32 H 1.09001 * 109.58418 * 113.84465 * 6 5 3 33 33 H 1.09006 * 109.56081 * 185.55153 * 7 6 5 34 34 H 1.09001 * 109.38696 * 65.51875 * 7 6 5 35 35 H 1.09000 * 109.44795 * 301.22595 * 8 7 6 36 36 H 1.00901 * 110.99755 * 320.97438 * 9 8 7 37 37 H 1.09000 * 109.47652 * 300.00146 * 10 9 8 38 38 H 1.09002 * 109.46992 * 60.00144 * 10 9 8 39 39 H 0.97000 * 119.99661 * 0.02562 * 13 11 10 40 40 H 0.97003 * 119.99114 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.50033 * 178.68352 * 22 8 7 42 42 H 1.09002 * 109.52495 * 58.60092 * 22 8 7 43 43 H 1.09000 * 109.58565 * 246.16012 * 23 5 3 44 44 H 1.09006 * 109.59056 * 6.58107 * 23 5 3 45 45 H 1.09000 * 110.51302 * 359.86216 * 24 2 1 46 46 H 1.08996 * 110.51047 * 122.57784 * 24 2 1 47 47 H 1.09001 * 110.38997 * 217.24754 * 25 24 2 48 48 H 1.09002 * 110.30273 * 94.94491 * 25 24 2 49 49 H 1.08993 * 110.37408 * 200.65844 * 27 26 25 50 50 H 1.08999 * 110.36933 * 78.32240 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.6534 1.8366 0.9668 5 7 1.8599 2.2046 -1.0721 6 6 1.0570 1.7380 -2.2107 7 6 1.8739 1.8931 -3.4922 8 6 2.3573 3.3399 -3.6144 9 7 3.1176 3.4982 -4.8614 10 6 2.2214 3.7666 -5.9940 11 6 3.0355 3.9233 -7.2525 12 8 4.2433 3.8210 -7.2102 13 7 2.4213 4.1762 -8.4253 14 6 3.1617 4.3182 -9.5703 15 1 4.2373 4.2280 -9.5324 16 6 2.5285 4.5794 -10.7792 17 7 1.2199 4.6898 -10.8251 18 14 3.5375 4.7737 -12.3392 19 1 4.2986 3.5246 -12.5952 20 1 2.6316 5.0444 -13.4842 21 1 4.4846 5.9062 -12.1783 22 6 3.2549 3.6820 -2.4231 23 6 2.4491 3.5494 -1.1271 24 6 2.0713 -0.7798 -1.2191 25 6 2.8801 -1.9399 -0.5895 26 8 3.2417 -1.4679 0.7266 27 6 2.0712 -0.7796 1.2189 28 1 -0.3633 0.4253 -0.9355 29 1 -0.3633 -1.0228 0.0994 30 1 -0.3634 0.5976 0.8361 31 1 0.7974 0.6888 -2.0692 32 1 0.1479 2.3347 -2.2857 33 1 1.2537 1.6427 -4.3529 34 1 2.7337 1.2240 -3.4564 35 1 1.4977 4.0100 -3.6257 36 1 3.6928 2.6886 -5.0394 37 1 1.5259 2.9357 -6.1118 38 1 1.6632 4.6838 -5.8062 39 1 1.4553 4.2576 -8.4591 40 1 0.7778 4.8717 -11.6691 41 1 3.6177 4.7051 -2.5228 42 1 4.1020 2.9966 -2.3965 43 1 1.6558 4.2968 -1.1119 44 1 3.1076 3.6951 -0.2708 45 1 1.2490 -1.1674 -1.8204 46 1 2.7200 -0.1441 -1.8217 47 1 3.7743 -2.1431 -1.1788 48 1 2.2623 -2.8349 -0.5151 49 1 2.3441 -0.0914 2.0188 50 1 1.3294 -1.4966 1.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203052593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:02 Heat of formation + Delta-G solvation = -135.144800 kcal Electronic energy + Delta-G solvation = -30432.320705 eV Core-core repulsion = 26265.383696 eV Total energy + Delta-G solvation = -4166.937009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15105 -40.31657 -39.75777 -38.70573 -36.44803 -35.83474 -34.97946 -33.27658 -32.20102 -31.92179 -30.70602 -28.40715 -27.37959 -26.46429 -25.11632 -24.45388 -23.72661 -22.65188 -21.56629 -21.01562 -20.02480 -19.78574 -18.31138 -17.78404 -17.38189 -16.91244 -16.60243 -16.56797 -16.40084 -16.18244 -16.08951 -15.84018 -15.51355 -15.27277 -14.97211 -14.75819 -14.67779 -14.30180 -14.03613 -13.89171 -13.68052 -13.48825 -13.31979 -13.18677 -13.04771 -12.90075 -12.72155 -12.63342 -12.43022 -12.36086 -12.21947 -12.12325 -11.97881 -11.78855 -11.71466 -11.52601 -11.48581 -10.82227 -10.70126 -10.33547 -10.00751 -9.75926 -9.24345 -8.46197 -5.94545 1.39992 1.42283 1.51135 1.52716 1.90310 2.06946 2.29555 2.91038 2.94437 3.21420 3.29692 3.37165 3.50825 3.68344 3.82757 3.89844 3.94716 4.01986 4.08312 4.20156 4.25870 4.31154 4.34373 4.45168 4.47247 4.56769 4.59189 4.62457 4.66589 4.72347 4.72588 4.76434 4.80040 4.84307 4.86921 4.91990 4.98121 5.03267 5.16781 5.21235 5.26275 5.41507 5.52367 5.80220 5.92499 6.14996 6.32636 6.41419 6.61493 7.06975 7.13737 7.57782 8.13620 8.70824 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.002046 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.012372 B =13685.090200 C =14002.290370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C 0.523 3.477 4 O -0.585 6.585 5 N -0.604 5.604 6 C 0.098 3.902 7 C -0.164 4.164 8 C 0.092 3.908 9 N -0.680 5.680 10 C 0.068 3.932 11 C 0.436 3.564 12 O -0.627 6.627 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.919 5.919 18 Si 0.990 3.010 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.274 1.274 22 C -0.113 4.113 23 C 0.116 3.884 24 C -0.145 4.145 25 C 0.036 3.964 26 O -0.404 6.404 27 C 0.059 3.941 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.343 0.657 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.124 0.876 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 -11.934 20.407 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C 0.313 3.687 4 O -0.465 6.465 5 N -0.335 5.335 6 C -0.024 4.024 7 C -0.203 4.203 8 C -0.018 4.018 9 N -0.311 5.311 10 C -0.064 4.064 11 C 0.223 3.777 12 O -0.513 6.513 13 N -0.210 5.210 14 C -0.464 4.464 15 H 0.095 0.905 16 C -0.211 4.211 17 N -0.560 5.560 18 Si 0.814 3.186 19 H -0.197 1.197 20 H -0.194 1.194 21 H -0.199 1.199 22 C -0.152 4.152 23 C -0.007 4.007 24 C -0.183 4.183 25 C -0.040 4.040 26 O -0.323 6.323 27 C -0.018 4.018 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.142 0.858 46 H 0.089 0.911 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.100 0.900 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.813 -11.074 20.966 25.295 hybrid contribution -0.034 -0.301 -1.137 1.176 sum -8.847 -11.375 19.829 24.512 Atomic orbital electron populations 1.22079 0.88602 1.05011 1.04107 1.22178 0.99840 0.91306 0.98242 1.20847 0.78283 0.87828 0.81774 1.90661 1.44198 1.76087 1.35558 1.48128 1.51476 1.15724 1.18206 1.22224 0.93700 1.03032 0.83394 1.22618 1.01220 0.97607 0.98878 1.21630 0.95736 0.96099 0.88326 1.60131 1.23096 1.46355 1.01523 1.21556 0.93857 1.03047 0.87987 1.20990 0.88692 0.82223 0.85748 1.90498 1.16642 1.57332 1.86843 1.41923 1.09739 1.62965 1.06379 1.19601 0.92568 1.47893 0.86341 0.90537 1.25996 0.97004 0.96342 1.01798 1.69656 1.08642 1.48883 1.28776 0.85028 0.77805 0.78844 0.76915 1.19701 1.19430 1.19922 1.21792 0.97912 1.02584 0.92942 1.21589 0.97861 0.83450 0.97802 1.23352 1.01569 0.96975 0.96363 1.23722 1.00341 0.96902 0.83012 1.89151 1.36587 1.74062 1.32539 1.23541 0.87945 0.94784 0.95532 0.89358 0.88585 0.92069 0.86512 0.88867 0.89081 0.91883 0.88922 0.83859 0.90898 0.87812 0.76868 0.91279 0.90351 0.93260 0.89470 0.90839 0.85782 0.91089 0.88942 0.89485 0.89961 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.02 71.98 0.58 -0.42 16 2 C -0.11 -1.58 0.69 -51.91 -0.04 -1.61 16 3 C 0.52 11.22 6.38 87.66 0.56 11.78 16 4 O -0.58 -17.90 14.88 -3.03 -0.05 -17.95 16 5 N -0.60 -10.46 2.89 -819.74 -2.37 -12.84 16 6 C 0.10 1.08 4.36 86.22 0.38 1.45 16 7 C -0.16 -2.39 5.24 30.53 0.16 -2.23 16 8 C 0.09 1.82 2.43 44.94 0.11 1.93 16 9 N -0.68 -19.67 5.87 -495.46 -2.91 -22.58 16 10 C 0.07 2.10 5.96 85.56 0.51 2.61 16 11 C 0.44 20.02 7.82 87.66 0.69 20.70 16 12 O -0.63 -34.30 15.78 -3.05 -0.05 -34.35 16 13 N -0.57 -28.53 5.29 -306.98 -1.62 -30.15 16 14 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 15 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 16 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 17 N -0.92 -48.48 13.05 21.66 0.28 -48.19 16 18 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C -0.11 -2.39 5.69 30.67 0.17 -2.21 16 23 C 0.12 2.21 6.42 86.36 0.55 2.77 16 24 C -0.15 -1.62 4.59 31.72 0.15 -1.47 16 25 C 0.04 0.49 7.64 72.60 0.55 1.05 16 26 O -0.40 -8.85 11.65 -148.98 -1.74 -10.58 16 27 C 0.06 1.03 6.60 72.49 0.48 1.50 16 28 H 0.09 0.37 5.42 -2.39 -0.01 0.36 16 29 H 0.10 0.28 8.02 -2.39 -0.02 0.26 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.12 0.82 2.84 -2.39 -0.01 0.81 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.17 7.42 -2.38 -0.02 1.16 16 34 H 0.06 1.06 7.24 -2.39 -0.02 1.04 16 35 H 0.09 1.63 7.80 -2.39 -0.02 1.61 16 36 H 0.34 10.75 8.18 -89.69 -0.73 10.02 16 37 H 0.07 1.86 7.41 -2.39 -0.02 1.84 16 38 H 0.10 2.89 8.06 -2.39 -0.02 2.88 16 39 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 40 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.72 7.03 -2.38 -0.02 1.71 16 45 H 0.12 0.54 7.19 -2.39 -0.02 0.53 16 46 H 0.07 1.02 5.94 -2.39 -0.01 1.01 16 47 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.08 1.86 6.82 -2.39 -0.02 1.84 16 50 H 0.09 1.07 7.78 -2.39 -0.02 1.06 16 Total: -1.00 -76.61 384.81 -0.78 -77.38 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.48 Total: 37.08 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 6.13 Total: 17.81 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -6.62 Total: -113.76 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -1.83 Total: -62.88 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -76.61 -0.78 -77.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203052593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.760 kcal (2) G-P(sol) polarization free energy of solvation -76.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds