Wall clock time and date at job start Sat Apr 11 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 110.45873 * 2 1 4 4 O 1.21285 * 119.99824 * 122.26717 * 3 2 1 5 5 N 1.34774 * 120.00348 * 302.27473 * 3 2 1 6 6 C 1.46929 * 120.62764 * 354.76534 * 5 3 2 7 7 C 1.53194 * 108.89233 * 233.67746 * 6 5 3 8 8 C 1.53041 * 109.31460 * 305.29345 * 7 6 5 9 9 N 1.46898 * 109.45730 * 181.38633 * 8 7 6 10 10 C 1.46900 * 111.00032 * 155.00594 * 9 8 7 11 11 C 1.50698 * 109.47434 * 179.97438 * 10 9 8 12 12 O 1.21294 * 119.99664 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99963 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99788 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99950 * 0.02562 * 14 13 11 16 16 C 1.38953 * 119.99783 * 180.02562 * 14 13 11 17 17 N 1.31407 * 120.00017 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99725 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47378 * 59.99810 * 18 16 14 20 20 H 1.48501 * 109.47111 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47289 * 299.99822 * 18 16 14 22 22 C 1.53047 * 109.53447 * 61.36882 * 8 7 6 23 23 C 1.47200 * 120.81778 * 174.91259 * 5 3 2 24 24 C 1.54508 * 110.62667 * 122.68990 * 2 1 3 25 25 C 1.54487 * 104.06319 * 118.70116 * 24 2 1 26 26 O 1.44423 * 104.80018 * 336.01943 * 25 24 2 27 27 C 1.44423 * 105.27872 * 40.51600 * 26 25 24 28 28 H 1.08999 * 109.46964 * 64.38265 * 1 2 3 29 29 H 1.09005 * 109.46867 * 184.37708 * 1 2 3 30 30 H 1.08995 * 109.46943 * 304.37443 * 1 2 3 31 31 H 1.09005 * 109.58438 * 113.82011 * 6 5 3 32 32 H 1.08994 * 109.58993 * 353.54065 * 6 5 3 33 33 H 1.08996 * 109.49361 * 65.25173 * 7 6 5 34 34 H 1.09004 * 109.48988 * 185.34421 * 7 6 5 35 35 H 1.08995 * 109.46138 * 301.36126 * 8 7 6 36 36 H 1.00908 * 111.00309 * 278.95610 * 9 8 7 37 37 H 1.09006 * 109.46610 * 300.00180 * 10 9 8 38 38 H 1.09000 * 109.47129 * 59.99395 * 10 9 8 39 39 H 0.97002 * 120.00123 * 0.02562 * 13 11 10 40 40 H 0.97005 * 120.00054 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.49727 * 58.57942 * 22 8 7 42 42 H 1.09000 * 109.49413 * 178.65067 * 22 8 7 43 43 H 1.09000 * 109.53354 * 6.53058 * 23 5 3 44 44 H 1.08999 * 109.67904 * 246.23187 * 23 5 3 45 45 H 1.08997 * 110.51152 * 237.34427 * 24 2 1 46 46 H 1.08996 * 110.51041 * 0.05808 * 24 2 1 47 47 H 1.08994 * 110.36877 * 217.18973 * 25 24 2 48 48 H 1.09000 * 110.46207 * 94.89698 * 25 24 2 49 49 H 1.09000 * 110.37354 * 200.65438 * 27 26 25 50 50 H 1.08992 * 110.37572 * 78.31391 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7941 1.7840 0.8882 5 7 1.7084 2.2612 -0.9868 6 6 0.9102 1.7947 -2.1288 7 6 1.6391 2.1601 -3.4257 8 6 1.9291 3.6628 -3.4373 9 7 2.5986 4.0223 -4.6944 10 6 2.3729 5.4356 -5.0256 11 6 3.0735 5.7668 -6.3180 12 8 3.6990 4.9097 -6.9057 13 7 3.0043 7.0152 -6.8213 14 6 3.6422 7.3166 -7.9968 15 1 4.1998 6.5537 -8.5197 16 6 3.5713 8.6038 -8.5155 17 7 2.8924 9.5319 -7.8795 18 14 4.4398 9.0143 -10.1175 19 1 3.9018 8.1589 -11.2056 20 1 4.2112 10.4429 -10.4526 21 1 5.8965 8.7675 -9.9682 22 6 2.8362 4.0180 -2.2569 23 6 2.1208 3.6736 -0.9467 24 6 2.0743 -0.7810 1.2170 25 6 2.8801 -1.9401 0.5894 26 8 2.3100 -2.1159 -0.7259 27 6 2.0713 -0.7796 -1.2190 28 1 -0.3633 0.4443 -0.9266 29 1 -0.3633 -1.0247 0.0784 30 1 -0.3633 0.5802 0.8482 31 1 -0.0680 2.2754 -2.1115 32 1 0.7870 0.7133 -2.0711 33 1 2.5771 1.6080 -3.4837 34 1 1.0122 1.9040 -4.2798 35 1 0.9925 4.2140 -3.3540 36 1 3.5850 3.8141 -4.6513 37 1 1.3035 5.6168 -5.1347 38 1 2.7681 6.0635 -4.2271 39 1 2.5038 7.7005 -6.3515 40 1 2.8432 10.4306 -8.2414 41 1 3.7629 3.4484 -2.3259 42 1 3.0618 5.0842 -2.2794 43 1 2.7986 3.8317 -0.1079 44 1 1.2429 4.3093 -0.8318 45 1 2.7244 -0.1459 1.8187 46 1 1.2534 -1.1691 1.8199 47 1 2.7602 -2.8486 1.1795 48 1 3.9344 -1.6739 0.5135 49 1 1.3302 -0.7968 -2.0180 50 1 3.0010 -0.3337 -1.5721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203052594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:06 Heat of formation + Delta-G solvation = -107.042321 kcal Electronic energy + Delta-G solvation = -30238.620509 eV Core-core repulsion = 26072.902114 eV Total energy + Delta-G solvation = -4165.718394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43555 -39.32023 -38.42221 -37.67808 -35.36218 -34.16494 -33.82709 -31.45389 -31.43476 -31.07543 -29.93287 -27.15944 -26.91846 -25.00964 -23.85464 -23.64242 -22.98005 -22.00570 -20.65537 -19.46552 -19.03243 -17.91107 -17.65474 -16.83987 -16.35163 -16.05033 -15.83850 -15.44094 -15.22509 -15.04321 -14.84382 -14.61744 -14.40383 -14.21261 -13.97645 -13.83733 -13.58774 -13.44238 -13.03510 -12.89533 -12.60782 -12.48426 -12.35235 -12.20188 -12.02256 -11.70664 -11.63262 -11.51088 -11.47048 -11.32337 -11.20306 -11.05982 -10.90767 -10.68284 -10.45618 -10.23023 -10.18088 -9.99066 -9.51928 -9.01269 -8.49468 -8.08095 -7.97919 -6.43514 -3.84422 2.22961 2.56244 3.18916 3.24738 3.29125 3.49863 3.83759 3.88285 4.01547 4.11308 4.24707 4.26236 4.41940 4.49277 4.64911 4.74084 4.76767 4.78535 4.94915 4.98889 5.04713 5.07603 5.14512 5.17842 5.21895 5.24173 5.27183 5.32238 5.38964 5.45408 5.52142 5.53728 5.61185 5.64291 5.65641 5.75043 5.79421 5.93244 5.97379 6.05452 6.22844 6.25392 6.32182 7.03217 7.17975 7.53266 7.60383 7.79296 8.04106 8.59148 9.15908 9.52110 10.03534 10.74071 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.001913 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.363825 B =14634.908719 C =14980.450164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.530 3.470 4 O -0.539 6.539 5 N -0.606 5.606 6 C 0.091 3.909 7 C -0.124 4.124 8 C 0.088 3.912 9 N -0.662 5.662 10 C 0.051 3.949 11 C 0.440 3.560 12 O -0.584 6.584 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.167 4.167 23 C 0.116 3.884 24 C -0.143 4.143 25 C 0.044 3.956 26 O -0.369 6.369 27 C 0.057 3.943 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.350 0.650 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 -17.231 19.090 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C 0.317 3.683 4 O -0.415 6.415 5 N -0.339 5.339 6 C -0.032 4.032 7 C -0.163 4.163 8 C -0.022 4.022 9 N -0.293 5.293 10 C -0.082 4.082 11 C 0.225 3.775 12 O -0.468 6.468 13 N -0.200 5.200 14 C -0.430 4.430 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.207 4.207 23 C -0.007 4.007 24 C -0.180 4.180 25 C -0.033 4.033 26 O -0.287 6.287 27 C -0.020 4.020 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.080 0.920 49 H 0.123 0.877 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.266 -17.805 18.576 26.737 hybrid contribution 0.686 1.572 0.187 1.726 sum -6.579 -16.233 18.763 25.668 Atomic orbital electron populations 1.22083 0.91186 1.03551 1.03394 1.22150 0.98478 0.93010 0.98341 1.20249 0.80011 0.86717 0.81279 1.90669 1.36281 1.77546 1.37054 1.48116 1.53523 1.10193 1.22047 1.22303 0.94593 1.01033 0.85268 1.21931 1.01622 0.96198 0.96506 1.21574 0.97458 0.95856 0.87349 1.60191 1.18826 1.19258 1.31056 1.21705 1.01165 0.88917 0.96412 1.19815 0.86260 0.83624 0.87800 1.90526 1.46465 1.47511 1.62284 1.41861 1.46634 1.09108 1.22382 1.19654 1.28384 0.96003 0.98926 0.87977 1.25267 0.97563 0.95394 0.99726 1.69601 1.41302 1.03453 1.39955 0.85911 0.79656 0.77211 0.81404 1.19865 1.20976 1.19914 1.22722 1.00048 1.02438 0.95470 1.21614 0.99787 0.80394 0.98861 1.23040 1.01167 0.96966 0.96862 1.23472 0.97158 0.98822 0.83826 1.89152 1.82950 1.25191 1.31431 1.23658 1.00605 0.82851 0.94882 0.90811 0.90746 0.91717 0.90769 0.88569 0.91277 0.89317 0.90281 0.82990 0.89627 0.93892 0.77471 0.91808 0.91153 0.90418 0.89046 0.91159 0.88110 0.89941 0.88702 0.91962 0.87741 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 7.97 37.16 0.30 -0.56 16 2 C -0.12 -0.92 0.69 -154.09 -0.11 -1.03 16 3 C 0.53 5.51 6.41 -10.99 -0.07 5.43 16 4 O -0.54 -7.44 14.72 5.55 0.08 -7.36 16 5 N -0.61 -5.46 2.98 -172.55 -0.51 -5.98 16 6 C 0.09 0.64 4.53 -3.71 -0.02 0.62 16 7 C -0.12 -1.12 5.69 -26.61 -0.15 -1.27 16 8 C 0.09 0.95 2.43 -67.67 -0.16 0.79 16 9 N -0.66 -9.95 5.87 -107.94 -0.63 -10.58 16 10 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 11 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 12 O -0.58 -15.69 15.78 5.54 0.09 -15.60 16 13 N -0.56 -14.12 5.29 -10.96 -0.06 -14.17 16 14 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 15 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 18 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.17 -1.70 5.33 -26.61 -0.14 -1.84 16 23 C 0.12 1.10 6.45 -3.56 -0.02 1.07 16 24 C -0.14 -1.11 6.32 -25.16 -0.16 -1.27 16 25 C 0.04 0.33 7.63 37.94 0.29 0.62 16 26 O -0.37 -3.48 11.65 -35.23 -0.41 -3.89 16 27 C 0.06 0.46 5.53 37.94 0.21 0.67 16 28 H 0.07 0.36 5.10 -51.93 -0.26 0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 32 H 0.10 0.54 2.49 -51.93 -0.13 0.42 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 36 H 0.35 5.63 8.18 -39.29 -0.32 5.31 16 37 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 38 H 0.04 0.65 7.41 -51.93 -0.38 0.27 16 39 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.81 7.42 -51.93 -0.39 0.42 16 43 H 0.09 0.99 7.02 -51.93 -0.36 0.62 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.95 6.50 -51.93 -0.34 0.61 16 46 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 0.65 6.18 -51.93 -0.32 0.33 16 50 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -33.20 386.52 -8.09 -41.30 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.78 Total: 11.95 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.39 Total: 6.20 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.48 Total: -54.37 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.24 Total: -26.85 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.20 -8.09 -41.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203052594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.746 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds