Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 110.45277 * 2 1 4 4 O 1.21280 * 120.00300 * 115.93259 * 3 2 1 5 5 N 1.34779 * 120.00142 * 295.93095 * 3 2 1 6 6 C 1.46927 * 120.63127 * 355.40713 * 5 3 2 7 7 C 1.53197 * 108.77420 * 126.41125 * 6 5 3 8 8 C 1.53040 * 109.30642 * 54.64408 * 7 6 5 9 9 C 1.53044 * 109.53512 * 298.62895 * 8 7 6 10 10 H 1.08997 * 109.49546 * 301.38209 * 9 8 7 11 11 N 1.46909 * 109.49373 * 181.32239 * 9 8 7 12 12 C 1.46904 * 110.99845 * 85.00154 * 11 9 8 13 13 C 1.50695 * 109.46754 * 179.97438 * 12 11 9 14 14 O 1.21294 * 120.00087 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00077 * 180.02562 * 13 12 11 16 16 C 1.37099 * 120.00260 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99789 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99795 * 180.02562 * 16 15 13 19 19 N 1.31403 * 120.00318 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99624 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47490 * 89.99605 * 20 18 16 22 22 H 1.48498 * 109.47144 * 209.99554 * 20 18 16 23 23 H 1.48506 * 109.47258 * 329.99647 * 20 18 16 24 24 C 1.46924 * 120.63290 * 175.43843 * 5 3 2 25 25 C 1.54509 * 110.50985 * 237.39523 * 2 1 3 26 26 C 1.54484 * 104.05892 * 241.21512 * 25 2 1 27 27 O 1.44421 * 104.80317 * 23.98210 * 26 25 2 28 28 C 1.44430 * 105.27734 * 319.48413 * 27 26 25 29 29 H 1.09004 * 109.47295 * 54.14541 * 1 2 3 30 30 H 1.09008 * 109.46769 * 174.14263 * 1 2 3 31 31 H 1.08995 * 109.47120 * 294.14325 * 1 2 3 32 32 H 1.09004 * 109.58554 * 6.63433 * 6 5 3 33 33 H 1.08999 * 109.59161 * 246.20763 * 6 5 3 34 34 H 1.08990 * 109.49740 * 294.68874 * 7 6 5 35 35 H 1.08998 * 109.51895 * 174.60544 * 7 6 5 36 36 H 1.09010 * 109.45533 * 178.61301 * 8 7 6 37 37 H 1.08993 * 109.46349 * 58.65324 * 8 7 6 38 38 H 1.00894 * 110.99388 * 208.95239 * 11 9 8 39 39 H 1.08998 * 109.47188 * 59.99809 * 12 11 9 40 40 H 1.08996 * 109.46944 * 299.99719 * 12 11 9 41 41 H 0.97000 * 119.99984 * 359.97438 * 15 13 12 42 42 H 0.97006 * 120.00008 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.59327 * 113.79596 * 24 5 3 44 44 H 1.09001 * 109.58639 * 353.36722 * 24 5 3 45 45 H 1.08997 * 110.51354 * 359.85923 * 25 2 1 46 46 H 1.09000 * 110.51017 * 122.43860 * 25 2 1 47 47 H 1.08995 * 110.36921 * 142.81525 * 26 25 2 48 48 H 1.09005 * 110.37069 * 265.14970 * 26 25 2 49 49 H 1.08994 * 110.37579 * 281.68776 * 28 27 26 50 50 H 1.08993 * 110.37460 * 159.34221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.6989 1.8197 0.9445 5 7 1.8139 2.2218 -1.0497 6 6 1.1249 1.7135 -2.2437 7 6 -0.0753 2.6174 -2.5426 8 6 0.4002 4.0672 -2.6608 9 6 1.0213 4.5119 -1.3347 10 1 0.2847 4.4147 -0.5372 11 7 1.4488 5.9135 -1.4391 12 6 0.3347 6.8265 -1.1507 13 6 0.8104 8.2517 -1.2667 14 8 1.9641 8.4840 -1.5603 15 7 -0.0459 9.2683 -1.0432 16 6 0.3867 10.5649 -1.1493 17 1 1.4138 10.7717 -1.4115 18 6 -0.4960 11.6128 -0.9183 19 7 -1.7455 11.3612 -0.5988 20 14 0.0937 13.3795 -1.0622 21 1 -0.0979 13.8534 -2.4564 22 1 -0.6865 14.2387 -0.1357 23 1 1.5343 13.4509 -0.7087 24 6 2.2339 3.6294 -1.0221 25 6 2.0714 -0.7798 -1.2191 26 6 2.8788 -1.9394 -0.5945 27 8 2.3119 -2.1165 0.7220 28 6 2.0743 -0.7806 1.2169 29 1 -0.3634 0.6019 -0.8329 30 1 -0.3633 -1.0224 -0.1049 31 1 -0.3633 0.4203 0.9377 32 1 0.7793 0.6960 -2.0607 33 1 1.8092 1.7221 -3.0920 34 1 -0.8014 2.5374 -1.7336 35 1 -0.5391 2.3090 -3.4795 36 1 -0.4482 4.7094 -2.8979 37 1 1.1445 4.1418 -3.4536 38 1 2.2339 6.0981 -0.8328 39 1 -0.0299 6.6467 -0.1393 40 1 -0.4712 6.6529 -1.8637 41 1 -0.9684 9.0825 -0.8081 42 1 -2.3618 12.0928 -0.4380 43 1 3.0086 3.7945 -1.7708 44 1 2.6201 3.8762 -0.0331 45 1 1.2491 -1.1674 -1.8204 46 1 2.7181 -0.1433 -1.8231 47 1 2.7576 -2.8473 -1.1852 48 1 3.9328 -1.6714 -0.5209 49 1 3.0048 -0.3350 1.5682 50 1 1.3351 -0.7985 2.0176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210315322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = -108.948571 kcal Electronic energy + Delta-G solvation = -30315.648162 eV Core-core repulsion = 26149.847106 eV Total energy + Delta-G solvation = -4165.801056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45342 -39.32828 -38.35393 -37.62553 -35.47043 -34.10182 -33.71275 -32.45180 -31.25547 -30.31299 -30.02873 -27.00711 -26.37654 -26.00830 -24.19215 -23.27451 -22.77967 -22.15694 -20.36280 -19.37380 -19.05352 -17.90307 -17.26488 -16.84680 -16.58413 -16.26349 -15.63843 -15.40508 -15.37147 -15.27962 -14.83181 -14.58923 -14.41416 -14.07957 -13.90584 -13.79879 -13.76342 -13.44637 -13.22470 -12.77749 -12.70346 -12.61927 -12.25488 -12.08696 -12.00130 -11.84863 -11.54961 -11.51671 -11.45031 -11.35866 -11.10661 -11.03535 -10.87180 -10.80693 -10.40058 -10.22977 -10.17724 -9.92866 -9.51990 -8.95891 -8.48477 -8.13347 -7.97405 -6.42719 -3.83539 2.24479 2.55883 3.17348 3.26038 3.32041 3.45555 3.88803 3.90225 4.05149 4.08462 4.21331 4.24190 4.37510 4.54840 4.59507 4.68490 4.71092 4.74779 4.83483 5.01839 5.02130 5.13912 5.19103 5.19954 5.24054 5.27652 5.29517 5.34897 5.35458 5.39385 5.47434 5.50480 5.57591 5.64864 5.72156 5.75427 5.82331 5.93118 6.00310 6.10801 6.18579 6.29259 6.32772 7.04010 7.16559 7.54364 7.58233 7.81491 8.05126 8.59939 9.16803 9.52949 10.04264 10.74994 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.001941 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.326483 B =14425.541945 C =14595.449848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.529 3.471 4 O -0.536 6.536 5 N -0.603 5.603 6 C 0.092 3.908 7 C -0.137 4.137 8 C -0.110 4.110 9 C 0.075 3.925 10 H 0.045 0.955 11 N -0.661 5.661 12 C 0.052 3.948 13 C 0.441 3.559 14 O -0.583 6.583 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.110 3.890 25 C -0.148 4.148 26 C 0.045 3.955 27 O -0.372 6.372 28 C 0.065 3.935 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.351 0.649 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -27.706 -2.705 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C 0.316 3.684 4 O -0.412 6.412 5 N -0.336 5.336 6 C -0.031 4.031 7 C -0.175 4.175 8 C -0.148 4.148 9 C -0.036 4.036 10 H 0.063 0.937 11 N -0.294 5.294 12 C -0.080 4.080 13 C 0.226 3.774 14 O -0.467 6.467 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.012 4.012 25 C -0.186 4.186 26 C -0.032 4.032 27 O -0.290 6.290 28 C -0.013 4.013 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.854 -27.344 -2.909 27.561 hybrid contribution -0.585 1.080 0.798 1.465 sum 1.268 -26.264 -2.111 26.379 Atomic orbital electron populations 1.22055 0.91011 1.03495 1.03517 1.22137 0.98540 0.92991 0.98173 1.20267 0.79419 0.86851 0.81817 1.90714 1.39804 1.75900 1.34827 1.47964 1.58313 1.10682 1.16686 1.22215 0.94567 0.98837 0.87463 1.21982 0.97277 0.95856 1.02431 1.21552 1.01223 0.94468 0.97558 1.21832 0.95885 0.88693 0.97145 0.93671 1.60101 1.08579 1.00305 1.60413 1.21711 0.94085 0.92560 0.99668 1.19778 0.87026 0.85935 0.84651 1.90527 1.18523 1.84695 1.52932 1.41862 1.11869 1.05406 1.60873 1.19705 0.97908 0.80957 1.44294 0.87899 1.25269 0.95091 1.00473 0.97160 1.69610 1.03807 1.33408 1.47490 0.85848 0.78816 0.81489 0.78081 1.20385 1.20938 1.19410 1.21767 0.96585 0.79009 1.03876 1.23263 1.01043 0.97385 0.96900 1.23435 0.97049 0.98557 0.84196 1.89138 1.83046 1.25889 1.30949 1.23420 1.01664 0.81601 0.94569 0.90888 0.90692 0.91543 0.88540 0.90885 0.91461 0.90222 0.91253 0.90785 0.82845 0.93844 0.89600 0.77476 0.91869 0.90164 0.88996 0.89198 0.89752 0.88629 0.92004 0.90277 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 7.94 37.16 0.30 -0.60 16 2 C -0.11 -0.91 0.69 -154.09 -0.11 -1.01 16 3 C 0.53 5.76 6.36 -10.99 -0.07 5.69 16 4 O -0.54 -7.92 14.95 5.56 0.08 -7.84 16 5 N -0.60 -5.78 2.95 -172.77 -0.51 -6.29 16 6 C 0.09 0.60 4.28 -3.71 -0.02 0.59 16 7 C -0.14 -0.96 5.85 -26.61 -0.16 -1.12 16 8 C -0.11 -1.12 5.40 -26.69 -0.14 -1.26 16 9 C 0.08 0.91 2.64 -67.59 -0.18 0.73 16 10 H 0.05 0.57 7.80 -51.93 -0.41 0.17 16 11 N -0.66 -10.42 5.94 -107.86 -0.64 -11.06 16 12 C 0.05 0.92 5.97 -4.98 -0.03 0.89 16 13 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 14 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 15 N -0.56 -14.31 5.29 -10.97 -0.06 -14.37 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 20 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.11 1.26 5.69 -3.71 -0.02 1.24 16 25 C -0.15 -0.85 4.58 -25.16 -0.12 -0.97 16 26 C 0.04 0.29 7.63 37.94 0.29 0.58 16 27 O -0.37 -3.47 11.65 -35.23 -0.41 -3.88 16 28 C 0.06 0.59 6.49 37.93 0.25 0.83 16 29 H 0.07 0.40 4.78 -51.93 -0.25 0.15 16 30 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.10 0.47 2.99 -51.93 -0.16 0.31 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.76 7.43 -51.92 -0.39 0.38 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.84 8.06 -39.30 -0.32 5.52 16 39 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.09 1.38 7.42 -51.93 -0.39 0.99 16 41 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.21 7.03 -51.93 -0.37 0.85 16 45 H 0.09 0.35 7.20 -51.93 -0.37 -0.03 16 46 H 0.08 0.48 6.76 -51.93 -0.35 0.13 16 47 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.85 7.01 -51.93 -0.36 0.48 16 50 H 0.10 0.81 7.86 -51.93 -0.41 0.40 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -33.53 385.43 -8.06 -41.59 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -7.78 Total: 11.66 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.33 Total: 7.87 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.48 Total: -55.55 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.24 Total: -27.46 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.53 -8.06 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210315322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.362 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds