Wall clock time and date at job start Sat Apr 11 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 110.45277 * 2 1 4 4 O 1.21280 * 120.00300 * 115.93259 * 3 2 1 5 5 N 1.34779 * 120.00142 * 295.93095 * 3 2 1 6 6 C 1.46927 * 120.63127 * 355.40713 * 5 3 2 7 7 C 1.53197 * 108.77420 * 126.41125 * 6 5 3 8 8 C 1.53040 * 109.30642 * 54.64408 * 7 6 5 9 9 C 1.53044 * 109.53512 * 298.62895 * 8 7 6 10 10 H 1.08997 * 109.49546 * 301.38209 * 9 8 7 11 11 N 1.46909 * 109.49373 * 181.32239 * 9 8 7 12 12 C 1.46904 * 110.99845 * 85.00154 * 11 9 8 13 13 C 1.50695 * 109.46754 * 179.97438 * 12 11 9 14 14 O 1.21294 * 120.00087 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00077 * 180.02562 * 13 12 11 16 16 C 1.37099 * 120.00260 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99789 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99795 * 180.02562 * 16 15 13 19 19 N 1.31403 * 120.00318 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99624 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47490 * 89.99605 * 20 18 16 22 22 H 1.48498 * 109.47144 * 209.99554 * 20 18 16 23 23 H 1.48506 * 109.47258 * 329.99647 * 20 18 16 24 24 C 1.46924 * 120.63290 * 175.43843 * 5 3 2 25 25 C 1.54509 * 110.50985 * 237.39523 * 2 1 3 26 26 C 1.54484 * 104.05892 * 241.21512 * 25 2 1 27 27 O 1.44421 * 104.80317 * 23.98210 * 26 25 2 28 28 C 1.44430 * 105.27734 * 319.48413 * 27 26 25 29 29 H 1.09004 * 109.47295 * 54.14541 * 1 2 3 30 30 H 1.09008 * 109.46769 * 174.14263 * 1 2 3 31 31 H 1.08995 * 109.47120 * 294.14325 * 1 2 3 32 32 H 1.09004 * 109.58554 * 6.63433 * 6 5 3 33 33 H 1.08999 * 109.59161 * 246.20763 * 6 5 3 34 34 H 1.08990 * 109.49740 * 294.68874 * 7 6 5 35 35 H 1.08998 * 109.51895 * 174.60544 * 7 6 5 36 36 H 1.09010 * 109.45533 * 178.61301 * 8 7 6 37 37 H 1.08993 * 109.46349 * 58.65324 * 8 7 6 38 38 H 1.00894 * 110.99388 * 208.95239 * 11 9 8 39 39 H 1.08998 * 109.47188 * 59.99809 * 12 11 9 40 40 H 1.08996 * 109.46944 * 299.99719 * 12 11 9 41 41 H 0.97000 * 119.99984 * 359.97438 * 15 13 12 42 42 H 0.97006 * 120.00008 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.59327 * 113.79596 * 24 5 3 44 44 H 1.09001 * 109.58639 * 353.36722 * 24 5 3 45 45 H 1.08997 * 110.51354 * 359.85923 * 25 2 1 46 46 H 1.09000 * 110.51017 * 122.43860 * 25 2 1 47 47 H 1.08995 * 110.36921 * 142.81525 * 26 25 2 48 48 H 1.09005 * 110.37069 * 265.14970 * 26 25 2 49 49 H 1.08994 * 110.37579 * 281.68776 * 28 27 26 50 50 H 1.08993 * 110.37460 * 159.34221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.6989 1.8197 0.9445 5 7 1.8139 2.2218 -1.0497 6 6 1.1249 1.7135 -2.2437 7 6 -0.0753 2.6174 -2.5426 8 6 0.4002 4.0672 -2.6608 9 6 1.0213 4.5119 -1.3347 10 1 0.2847 4.4147 -0.5372 11 7 1.4488 5.9135 -1.4391 12 6 0.3347 6.8265 -1.1507 13 6 0.8104 8.2517 -1.2667 14 8 1.9641 8.4840 -1.5603 15 7 -0.0459 9.2683 -1.0432 16 6 0.3867 10.5649 -1.1493 17 1 1.4138 10.7717 -1.4115 18 6 -0.4960 11.6128 -0.9183 19 7 -1.7455 11.3612 -0.5988 20 14 0.0937 13.3795 -1.0622 21 1 -0.0979 13.8534 -2.4564 22 1 -0.6865 14.2387 -0.1357 23 1 1.5343 13.4509 -0.7087 24 6 2.2339 3.6294 -1.0221 25 6 2.0714 -0.7798 -1.2191 26 6 2.8788 -1.9394 -0.5945 27 8 2.3119 -2.1165 0.7220 28 6 2.0743 -0.7806 1.2169 29 1 -0.3634 0.6019 -0.8329 30 1 -0.3633 -1.0224 -0.1049 31 1 -0.3633 0.4203 0.9377 32 1 0.7793 0.6960 -2.0607 33 1 1.8092 1.7221 -3.0920 34 1 -0.8014 2.5374 -1.7336 35 1 -0.5391 2.3090 -3.4795 36 1 -0.4482 4.7094 -2.8979 37 1 1.1445 4.1418 -3.4536 38 1 2.2339 6.0981 -0.8328 39 1 -0.0299 6.6467 -0.1393 40 1 -0.4712 6.6529 -1.8637 41 1 -0.9684 9.0825 -0.8081 42 1 -2.3618 12.0928 -0.4380 43 1 3.0086 3.7945 -1.7708 44 1 2.6201 3.8762 -0.0331 45 1 1.2491 -1.1674 -1.8204 46 1 2.7181 -0.1433 -1.8231 47 1 2.7576 -2.8473 -1.1852 48 1 3.9328 -1.6714 -0.5209 49 1 3.0048 -0.3350 1.5682 50 1 1.3351 -0.7985 2.0176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210315322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:29 Heat of formation + Delta-G solvation = -134.972291 kcal Electronic energy + Delta-G solvation = -30316.776635 eV Core-core repulsion = 26149.847106 eV Total energy + Delta-G solvation = -4166.929529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18717 -40.36076 -39.82758 -38.67217 -36.58515 -35.88351 -34.67287 -33.31836 -33.21020 -31.13186 -30.81812 -27.97941 -27.56410 -26.83558 -25.84811 -23.96858 -23.51233 -22.92122 -21.23548 -21.10623 -19.99017 -19.80728 -18.13750 -17.71758 -17.62192 -17.23092 -16.93309 -16.52268 -16.33380 -16.28349 -16.00802 -15.76656 -15.49374 -15.36692 -15.19121 -14.83415 -14.52507 -14.42627 -14.15048 -13.92744 -13.60140 -13.45713 -13.35732 -13.34512 -13.17463 -12.90785 -12.77581 -12.55757 -12.43860 -12.29664 -12.13577 -12.09892 -11.91528 -11.85570 -11.66360 -11.57550 -11.52449 -10.87473 -10.69475 -10.38310 -10.04143 -9.79249 -9.43144 -8.48638 -5.97562 1.36805 1.40713 1.42628 1.53572 1.76316 2.01843 2.27972 2.83905 2.89635 3.18252 3.32606 3.41004 3.47884 3.63914 3.73532 3.82247 3.92613 3.98521 4.04771 4.17954 4.22053 4.24085 4.28167 4.41523 4.48997 4.52314 4.55907 4.62726 4.63649 4.70796 4.74157 4.75887 4.82187 4.86814 4.89582 4.95317 4.98511 5.06935 5.16138 5.25057 5.34919 5.39347 5.44276 5.72127 5.84986 6.05129 6.27355 6.29289 6.57310 6.99454 7.10167 7.53048 8.08210 8.68704 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.001941 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.326483 B =14425.541945 C =14595.449848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.523 3.477 4 O -0.586 6.586 5 N -0.598 5.598 6 C 0.087 3.913 7 C -0.129 4.129 8 C -0.108 4.108 9 C 0.081 3.919 10 H 0.043 0.957 11 N -0.671 5.671 12 C 0.069 3.931 13 C 0.437 3.563 14 O -0.623 6.623 15 N -0.572 5.572 16 C -0.334 4.334 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.994 3.006 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.116 3.884 25 C -0.142 4.142 26 C 0.037 3.963 27 O -0.387 6.387 28 C 0.063 3.937 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.343 0.657 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.121 0.879 46 H 0.087 0.913 47 H 0.120 0.880 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 -29.411 -4.341 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C 0.312 3.688 4 O -0.466 6.466 5 N -0.330 5.330 6 C -0.034 4.034 7 C -0.168 4.168 8 C -0.147 4.147 9 C -0.029 4.029 10 H 0.061 0.939 11 N -0.304 5.304 12 C -0.064 4.064 13 C 0.225 3.775 14 O -0.509 6.509 15 N -0.209 5.209 16 C -0.464 4.464 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.560 5.560 20 Si 0.817 3.183 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.008 4.008 25 C -0.180 4.180 26 C -0.039 4.039 27 O -0.306 6.306 28 C -0.015 4.015 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.161 0.839 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.139 0.861 46 H 0.106 0.894 47 H 0.138 0.862 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.142 -29.086 -4.577 29.444 hybrid contribution -0.017 1.563 1.309 2.039 sum 0.125 -27.522 -3.267 27.716 Atomic orbital electron populations 1.22080 0.89279 1.04816 1.03586 1.22125 0.99672 0.90744 0.98704 1.20887 0.78654 0.88028 0.81190 1.90694 1.42090 1.77033 1.36760 1.48040 1.57947 1.09585 1.17453 1.22518 0.94565 0.99812 0.86464 1.21971 0.97343 0.93416 1.04027 1.21558 1.00650 0.96667 0.95782 1.21885 0.95977 0.86531 0.98516 0.93918 1.60161 1.07884 1.02049 1.60311 1.21547 0.94826 0.88739 1.01272 1.20817 0.86213 0.87944 0.82531 1.90494 1.20311 1.85846 1.54250 1.41927 1.12307 1.05231 1.61474 1.19665 0.97399 0.82772 1.46551 0.90322 1.26057 0.95124 1.04009 0.96138 1.69668 1.04397 1.34807 1.47155 0.84916 0.78103 0.76697 0.78552 1.19499 1.19511 1.19856 1.21542 0.96373 0.80410 1.02467 1.23322 1.01933 0.96668 0.96045 1.23654 0.96778 1.00138 0.83379 1.89123 1.83275 1.25744 1.32434 1.23344 1.00672 0.81908 0.95530 0.89555 0.88906 0.92580 0.86113 0.89423 0.91235 0.87413 0.91886 0.91213 0.83851 0.92175 0.87493 0.76963 0.91248 0.90150 0.91435 0.86058 0.89438 0.86170 0.92739 0.92848 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.94 71.98 0.57 -0.79 16 2 C -0.11 -1.54 0.69 -51.91 -0.04 -1.58 16 3 C 0.52 11.19 6.36 87.66 0.56 11.75 16 4 O -0.59 -18.18 14.95 -3.03 -0.05 -18.22 16 5 N -0.60 -10.70 2.95 -818.90 -2.42 -13.12 16 6 C 0.09 0.84 4.28 86.36 0.37 1.21 16 7 C -0.13 -1.34 5.85 30.67 0.18 -1.16 16 8 C -0.11 -1.97 5.40 30.62 0.17 -1.80 16 9 C 0.08 1.90 2.64 44.99 0.12 2.02 16 10 H 0.04 1.04 7.80 -2.39 -0.02 1.02 16 11 N -0.67 -21.21 5.94 -495.16 -2.94 -24.15 16 12 C 0.07 2.37 5.97 85.55 0.51 2.88 16 13 C 0.44 21.04 7.82 87.66 0.69 21.72 16 14 O -0.62 -34.90 15.78 -3.07 -0.05 -34.95 16 15 N -0.57 -29.63 5.29 -306.99 -1.62 -31.25 16 16 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 17 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 18 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 19 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 20 Si 0.99 43.16 29.55 68.60 2.03 45.18 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 C 0.12 2.65 5.69 86.36 0.49 3.14 16 25 C -0.14 -1.20 4.58 31.61 0.14 -1.05 16 26 C 0.04 0.41 7.63 72.49 0.55 0.96 16 27 O -0.39 -6.81 11.65 -148.98 -1.74 -8.55 16 28 C 0.06 1.14 6.49 72.48 0.47 1.61 16 29 H 0.09 0.60 4.78 -2.38 -0.01 0.59 16 30 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.12 0.61 2.99 -2.39 -0.01 0.60 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.74 7.56 -2.39 -0.02 0.72 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 1.24 7.43 -2.38 -0.02 1.22 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.34 11.77 8.06 -89.70 -0.72 11.05 16 39 H 0.06 1.90 8.06 -2.39 -0.02 1.88 16 40 H 0.11 3.28 7.42 -2.39 -0.02 3.26 16 41 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 42 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.89 7.03 -2.39 -0.02 1.87 16 45 H 0.12 0.30 7.20 -2.39 -0.02 0.28 16 46 H 0.09 0.72 6.76 -2.39 -0.02 0.70 16 47 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.05 1.23 7.01 -2.39 -0.02 1.22 16 50 H 0.10 1.69 7.86 -2.39 -0.02 1.67 16 Total: -1.00 -75.65 385.43 -0.92 -76.57 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.48 Total: 37.61 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 6.06 Total: 20.32 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -6.70 Total: -117.95 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -1.83 Total: -61.73 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.65 -0.92 -76.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210315322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.404 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds