Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47276 * 2 1 4 4 C 1.50702 * 119.99467 * 265.38929 * 3 2 1 5 5 C 1.32987 * 120.00131 * 85.39146 * 3 2 1 6 6 C 1.47101 * 120.00217 * 352.49590 * 5 3 2 7 7 O 1.21611 * 119.99716 * 353.94234 * 6 5 3 8 8 N 1.34776 * 119.99935 * 173.93585 * 6 5 3 9 9 C 1.46504 * 119.99925 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.27419 * 34.30104 * 9 8 6 11 11 C 1.53988 * 110.30723 * 272.21238 * 9 8 6 12 12 N 1.48131 * 106.94667 * 242.33368 * 11 9 8 13 13 C 1.46898 * 110.95490 * 214.10681 * 12 11 9 14 14 C 1.50696 * 109.46618 * 299.81772 * 13 12 11 15 15 O 1.21292 * 120.00514 * 353.94125 * 14 13 12 16 16 N 1.34782 * 119.99651 * 173.94108 * 14 13 12 17 17 C 1.37095 * 119.99953 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00486 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99917 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99977 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00220 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47070 * 89.99977 * 21 19 17 23 23 H 1.48499 * 109.47379 * 210.00278 * 21 19 17 24 24 H 1.48506 * 109.46956 * 329.99958 * 21 19 17 25 25 C 1.48537 * 105.82104 * 334.59408 * 12 11 9 26 26 C 1.54597 * 110.30709 * 156.38967 * 9 8 6 27 27 H 1.08999 * 110.72833 * 22.51612 * 26 9 8 28 28 O 1.42895 * 110.72415 * 259.40840 * 26 9 8 29 29 C 1.42899 * 114.00214 * 150.00377 * 28 26 9 30 30 H 1.09001 * 109.47261 * 300.00881 * 1 2 3 31 31 H 1.08999 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46532 * 60.00329 * 1 2 3 33 33 H 1.08999 * 109.46959 * 119.99360 * 2 1 3 34 34 H 1.09001 * 109.47660 * 239.99483 * 2 1 3 35 35 H 1.09008 * 109.46853 * 90.00636 * 4 3 2 36 36 H 1.09003 * 109.46931 * 209.99331 * 4 3 2 37 37 H 1.08998 * 109.47735 * 330.00230 * 4 3 2 38 38 H 1.07999 * 120.00151 * 172.49989 * 5 3 2 39 39 H 0.96996 * 120.00139 * 0.02562 * 8 6 5 40 40 H 1.08994 * 109.92146 * 1.66252 * 11 9 8 41 41 H 1.09004 * 109.91711 * 122.95617 * 11 9 8 42 42 H 1.08997 * 109.47251 * 59.81712 * 13 12 11 43 43 H 1.09000 * 109.46944 * 179.81921 * 13 12 11 44 44 H 0.97002 * 119.99863 * 0.02562 * 16 14 13 45 45 H 0.97003 * 119.99834 * 180.02562 * 20 19 17 46 46 H 1.08993 * 110.66793 * 280.83083 * 25 12 11 47 47 H 1.09001 * 110.66777 * 157.69508 * 25 12 11 48 48 H 1.09006 * 109.46906 * 299.99874 * 29 28 26 49 49 H 1.08996 * 109.47280 * 59.99962 * 29 28 26 50 50 H 1.08997 * 109.47407 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3824 2.0962 -1.3010 5 6 2.1668 2.0786 1.1480 6 6 1.6724 1.4834 2.3990 7 8 1.0437 0.4428 2.3704 8 7 1.9162 2.0913 3.5769 9 6 1.4243 1.4982 4.8230 10 1 1.4478 0.4104 4.7586 11 6 -0.0064 1.9853 5.1183 12 7 0.0470 2.7320 6.3965 13 6 -1.1915 2.5478 7.1647 14 6 -2.3611 3.0546 6.3609 15 8 -2.1717 3.6223 5.3060 16 7 -3.6179 2.8770 6.8144 17 6 -4.6820 3.3385 6.0835 18 1 -4.5133 3.8440 5.1442 19 6 -5.9776 3.1559 6.5513 20 7 -6.9976 3.5978 5.8504 21 14 -6.2695 2.2809 8.1756 22 1 -6.2768 3.2748 9.2789 23 1 -7.5780 1.5800 8.1322 24 1 -5.1859 1.2922 8.4070 25 6 1.2165 2.1894 7.1340 26 6 2.2737 1.9834 6.0201 27 1 2.7727 2.9231 5.7834 28 8 3.2266 0.9887 6.4001 29 6 4.4275 1.5196 6.9641 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.5010 2.6006 -1.6972 36 1 3.1729 2.8270 -1.1298 37 1 2.7265 1.3497 -2.0169 38 1 2.6390 3.0498 1.1618 39 1 2.4174 2.9214 3.5997 40 1 -0.3478 2.6418 4.3180 41 1 -0.6772 1.1313 5.2133 42 1 -1.3309 1.4885 7.3808 43 1 -1.1251 3.1037 8.0999 44 1 -3.7694 2.4233 7.6583 45 1 -7.9021 3.4706 6.1771 46 1 0.9662 1.2399 7.6071 47 1 1.5718 2.9071 7.8735 48 1 4.9139 2.1698 6.2368 49 1 4.1862 2.0924 7.8594 50 1 5.0987 0.7016 7.2256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212221586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -80.566271 kcal Electronic energy + Delta-G solvation = -30309.516671 eV Core-core repulsion = 26144.946364 eV Total energy + Delta-G solvation = -4164.570307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37438 -39.26539 -38.24823 -36.76506 -35.99748 -34.31775 -33.85532 -31.68640 -31.17393 -30.40662 -28.72218 -27.72803 -27.18205 -25.97665 -24.09664 -23.61301 -21.83203 -21.42863 -20.48229 -19.31866 -18.77320 -18.25372 -17.36367 -16.85842 -16.39999 -15.95087 -15.36179 -15.31848 -15.05404 -14.90761 -14.72179 -14.61650 -14.18820 -14.00618 -13.73803 -13.52458 -13.34420 -13.00389 -12.88343 -12.75789 -12.62881 -12.43149 -12.23396 -12.18204 -11.95768 -11.90664 -11.85768 -11.66850 -11.34033 -11.09194 -11.00450 -10.89515 -10.71102 -10.58171 -9.97986 -9.93578 -9.54219 -9.51006 -9.25734 -8.87741 -8.59032 -8.18214 -8.10211 -6.29348 -3.80605 1.30391 3.04230 3.07852 3.08774 3.16362 3.31043 3.44135 3.75242 4.10069 4.13521 4.36854 4.58581 4.61727 4.67463 4.80698 4.83670 5.03877 5.06551 5.11295 5.22169 5.25275 5.28887 5.31618 5.37802 5.41748 5.44367 5.53372 5.58356 5.61512 5.62999 5.66403 5.71913 5.74132 5.89059 5.96730 6.00582 6.14334 6.31388 6.32164 6.47693 6.55004 6.67128 6.82712 7.01726 7.08683 7.55615 7.59615 8.15810 8.32786 8.61597 8.96837 9.43970 9.84420 10.83790 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.003160 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.203045 B = 8859.074457 C =11225.636798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.029 4.029 4 C -0.126 4.126 5 C -0.231 4.231 6 C 0.546 3.454 7 O -0.530 6.530 8 N -0.716 5.716 9 C 0.138 3.862 10 H 0.104 0.896 11 C 0.039 3.961 12 N -0.488 5.488 13 C 0.033 3.967 14 C 0.452 3.548 15 O -0.559 6.559 16 N -0.591 5.591 17 C -0.303 4.303 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.015 3.985 26 C 0.080 3.920 27 H 0.083 0.917 28 O -0.378 6.378 29 C 0.031 3.969 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.399 0.601 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.043 0.957 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.154 -4.819 -3.048 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.031 4.031 4 C -0.182 4.182 5 C -0.252 4.252 6 C 0.336 3.664 7 O -0.409 6.409 8 N -0.367 5.367 9 C 0.032 3.968 10 H 0.122 0.878 11 C -0.090 4.090 12 N -0.214 5.214 13 C -0.099 4.099 14 C 0.237 3.763 15 O -0.440 6.440 16 N -0.230 5.230 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.114 4.114 26 C 0.021 3.979 27 H 0.101 0.899 28 O -0.295 6.295 29 C -0.065 4.065 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.142 0.858 39 H 0.233 0.767 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 23.606 -4.793 -3.924 24.405 hybrid contribution -0.267 -0.682 1.694 1.845 sum 23.339 -5.475 -2.230 24.076 Atomic orbital electron populations 1.21628 0.93832 1.01835 1.02084 1.20874 0.97480 0.92186 1.02657 1.22576 0.90396 0.95815 0.94291 1.21009 1.02252 1.00546 0.94440 1.22328 1.08438 1.02099 0.92366 1.18536 0.79749 0.84248 0.83882 1.90764 1.39987 1.23270 1.86901 1.45867 1.57686 1.27434 1.05730 1.21859 0.92829 0.99715 0.82348 0.87794 1.23336 0.94055 0.97541 0.94068 1.64632 1.01507 1.52034 1.03196 1.22147 0.90192 0.99877 0.97635 1.19579 0.83247 0.85465 0.88011 1.90553 1.84459 1.45197 1.23826 1.42200 1.05863 1.53349 1.21616 1.19419 0.83189 1.34704 1.05899 0.86284 1.25033 0.95230 0.97750 0.98137 1.69625 0.98849 1.45614 1.38064 0.86678 0.78705 0.80070 0.83978 1.19610 1.20182 1.19519 1.23651 0.91705 0.99553 0.96505 1.23237 0.89545 0.91451 0.93659 0.89948 1.87941 1.27642 1.32532 1.81423 1.22810 0.86649 0.99845 0.97242 0.90680 0.92862 0.93941 0.88805 0.92488 0.90098 0.91251 0.91217 0.85766 0.76682 0.87570 0.92950 0.93062 0.88775 0.79727 0.91633 0.92455 0.89471 0.93969 0.93785 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.32 37.16 0.35 -1.41 16 2 C -0.10 -1.08 5.35 -27.88 -0.15 -1.23 16 3 C -0.03 -0.30 5.36 -101.17 -0.54 -0.84 16 4 C -0.13 -0.91 10.04 36.01 0.36 -0.55 16 5 C -0.23 -2.51 9.63 -37.81 -0.36 -2.87 16 6 C 0.55 7.44 7.58 -12.67 -0.10 7.34 16 7 O -0.53 -8.76 10.73 5.27 0.06 -8.70 16 8 N -0.72 -8.72 5.01 -53.67 -0.27 -8.99 16 9 C 0.14 1.88 3.08 -66.57 -0.20 1.68 16 10 H 0.10 1.58 7.53 -51.93 -0.39 1.19 16 11 C 0.04 0.65 5.23 -2.63 -0.01 0.64 16 12 N -0.49 -7.80 5.10 -231.70 -1.18 -8.99 16 13 C 0.03 0.57 5.28 -4.98 -0.03 0.54 16 14 C 0.45 10.38 7.41 -10.99 -0.08 10.30 16 15 O -0.56 -15.00 14.19 5.55 0.08 -14.92 16 16 N -0.59 -14.28 5.09 -10.96 -0.06 -14.33 16 17 C -0.30 -8.68 10.16 -14.93 -0.15 -8.84 16 18 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -26.03 13.96 55.50 0.77 -25.25 16 21 Si 0.88 19.63 27.73 -169.99 -4.71 14.91 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 25 C 0.01 0.18 6.29 -1.89 -0.01 0.17 16 26 C 0.08 0.90 3.26 -24.87 -0.08 0.82 16 27 H 0.08 0.80 7.43 -51.93 -0.39 0.42 16 28 O -0.38 -4.21 10.45 -35.23 -0.37 -4.58 16 29 C 0.03 0.23 10.85 101.05 1.10 1.33 16 30 H 0.07 1.19 6.14 -51.93 -0.32 0.87 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.25 6.09 -51.93 -0.32 0.93 16 34 H 0.06 0.54 7.99 -51.93 -0.41 0.12 16 35 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.41 8.06 -51.93 -0.42 0.00 16 37 H 0.07 0.43 8.00 -51.93 -0.42 0.01 16 38 H 0.12 1.03 8.04 -52.49 -0.42 0.61 16 39 H 0.40 3.80 8.34 -40.82 -0.34 3.46 16 40 H 0.11 2.15 6.86 -51.93 -0.36 1.79 16 41 H 0.05 0.96 7.72 -51.93 -0.40 0.56 16 42 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.06 0.69 7.96 -51.93 -0.41 0.28 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 49 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -34.70 402.08 -7.82 -42.51 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -8.18 Total: 14.15 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.01 Total: 8.13 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.73 Total: -57.57 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.23 Total: -28.20 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.70 -7.82 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212221586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.054 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds