Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47276 * 2 1 4 4 C 1.50702 * 119.99467 * 265.38929 * 3 2 1 5 5 C 1.32987 * 120.00131 * 85.39146 * 3 2 1 6 6 C 1.47101 * 120.00217 * 352.49590 * 5 3 2 7 7 O 1.21611 * 119.99716 * 353.94234 * 6 5 3 8 8 N 1.34776 * 119.99935 * 173.93585 * 6 5 3 9 9 C 1.46504 * 119.99925 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.27419 * 34.30104 * 9 8 6 11 11 C 1.53988 * 110.30723 * 272.21238 * 9 8 6 12 12 N 1.48131 * 106.94667 * 242.33368 * 11 9 8 13 13 C 1.46898 * 110.95490 * 214.10681 * 12 11 9 14 14 C 1.50696 * 109.46618 * 299.81772 * 13 12 11 15 15 O 1.21292 * 120.00514 * 353.94125 * 14 13 12 16 16 N 1.34782 * 119.99651 * 173.94108 * 14 13 12 17 17 C 1.37095 * 119.99953 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00486 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99917 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99977 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00220 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47070 * 89.99977 * 21 19 17 23 23 H 1.48499 * 109.47379 * 210.00278 * 21 19 17 24 24 H 1.48506 * 109.46956 * 329.99958 * 21 19 17 25 25 C 1.48537 * 105.82104 * 334.59408 * 12 11 9 26 26 C 1.54597 * 110.30709 * 156.38967 * 9 8 6 27 27 H 1.08999 * 110.72833 * 22.51612 * 26 9 8 28 28 O 1.42895 * 110.72415 * 259.40840 * 26 9 8 29 29 C 1.42899 * 114.00214 * 150.00377 * 28 26 9 30 30 H 1.09001 * 109.47261 * 300.00881 * 1 2 3 31 31 H 1.08999 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46532 * 60.00329 * 1 2 3 33 33 H 1.08999 * 109.46959 * 119.99360 * 2 1 3 34 34 H 1.09001 * 109.47660 * 239.99483 * 2 1 3 35 35 H 1.09008 * 109.46853 * 90.00636 * 4 3 2 36 36 H 1.09003 * 109.46931 * 209.99331 * 4 3 2 37 37 H 1.08998 * 109.47735 * 330.00230 * 4 3 2 38 38 H 1.07999 * 120.00151 * 172.49989 * 5 3 2 39 39 H 0.96996 * 120.00139 * 0.02562 * 8 6 5 40 40 H 1.08994 * 109.92146 * 1.66252 * 11 9 8 41 41 H 1.09004 * 109.91711 * 122.95617 * 11 9 8 42 42 H 1.08997 * 109.47251 * 59.81712 * 13 12 11 43 43 H 1.09000 * 109.46944 * 179.81921 * 13 12 11 44 44 H 0.97002 * 119.99863 * 0.02562 * 16 14 13 45 45 H 0.97003 * 119.99834 * 180.02562 * 20 19 17 46 46 H 1.08993 * 110.66793 * 280.83083 * 25 12 11 47 47 H 1.09001 * 110.66777 * 157.69508 * 25 12 11 48 48 H 1.09006 * 109.46906 * 299.99874 * 29 28 26 49 49 H 1.08996 * 109.47280 * 59.99962 * 29 28 26 50 50 H 1.08997 * 109.47407 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3824 2.0962 -1.3010 5 6 2.1668 2.0786 1.1480 6 6 1.6724 1.4834 2.3990 7 8 1.0437 0.4428 2.3704 8 7 1.9162 2.0913 3.5769 9 6 1.4243 1.4982 4.8230 10 1 1.4478 0.4104 4.7586 11 6 -0.0064 1.9853 5.1183 12 7 0.0470 2.7320 6.3965 13 6 -1.1915 2.5478 7.1647 14 6 -2.3611 3.0546 6.3609 15 8 -2.1717 3.6223 5.3060 16 7 -3.6179 2.8770 6.8144 17 6 -4.6820 3.3385 6.0835 18 1 -4.5133 3.8440 5.1442 19 6 -5.9776 3.1559 6.5513 20 7 -6.9976 3.5978 5.8504 21 14 -6.2695 2.2809 8.1756 22 1 -6.2768 3.2748 9.2789 23 1 -7.5780 1.5800 8.1322 24 1 -5.1859 1.2922 8.4070 25 6 1.2165 2.1894 7.1340 26 6 2.2737 1.9834 6.0201 27 1 2.7727 2.9231 5.7834 28 8 3.2266 0.9887 6.4001 29 6 4.4275 1.5196 6.9641 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.5010 2.6006 -1.6972 36 1 3.1729 2.8270 -1.1298 37 1 2.7265 1.3497 -2.0169 38 1 2.6390 3.0498 1.1618 39 1 2.4174 2.9214 3.5997 40 1 -0.3478 2.6418 4.3180 41 1 -0.6772 1.1313 5.2133 42 1 -1.3309 1.4885 7.3808 43 1 -1.1251 3.1037 8.0999 44 1 -3.7694 2.4233 7.6583 45 1 -7.9021 3.4706 6.1771 46 1 0.9662 1.2399 7.6071 47 1 1.5718 2.9071 7.8735 48 1 4.9139 2.1698 6.2368 49 1 4.1862 2.0924 7.8594 50 1 5.0987 0.7016 7.2256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212221586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -109.311493 kcal Electronic energy + Delta-G solvation = -30310.763157 eV Core-core repulsion = 26144.946364 eV Total energy + Delta-G solvation = -4165.816793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48697 -40.56218 -39.71630 -37.80108 -36.97058 -35.99937 -35.34887 -33.78305 -32.26151 -31.46081 -29.68760 -28.82710 -28.18912 -27.10645 -25.71729 -24.64634 -23.01672 -22.40333 -21.68812 -21.24027 -20.17869 -19.68942 -18.35260 -17.87106 -17.66290 -17.41302 -16.82055 -16.54230 -16.25278 -15.97657 -15.85588 -15.68790 -15.37603 -15.23453 -14.95673 -14.87568 -14.55888 -14.48226 -14.23934 -13.86011 -13.74425 -13.63738 -13.37784 -13.19735 -13.08030 -13.05795 -12.95509 -12.83302 -12.54296 -12.45354 -12.40930 -12.00254 -11.96400 -11.81471 -11.73355 -11.51442 -10.78428 -10.58283 -10.41977 -10.26718 -10.18788 -9.86144 -9.47490 -8.43259 -6.04142 0.41538 1.28206 1.33410 1.42323 1.92316 2.12749 2.21001 2.30516 2.42502 2.83092 3.12363 3.20527 3.47230 3.58322 3.80312 3.85059 3.93136 4.09771 4.14059 4.20956 4.29850 4.33891 4.44001 4.46730 4.52309 4.52677 4.58794 4.64465 4.65663 4.68622 4.73297 4.81976 4.82889 4.91282 4.97006 4.98182 5.09081 5.22057 5.36349 5.48439 5.49342 5.58064 5.65346 5.69177 5.79441 5.94510 6.20839 6.57052 6.59629 6.85806 7.31288 7.36651 7.93680 8.74506 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.003160 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.203045 B = 8859.074457 C =11225.636798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 C -0.026 4.026 4 C -0.123 4.123 5 C -0.244 4.244 6 C 0.533 3.467 7 O -0.569 6.569 8 N -0.708 5.708 9 C 0.145 3.855 10 H 0.084 0.916 11 C 0.047 3.953 12 N -0.501 5.501 13 C 0.043 3.957 14 C 0.448 3.552 15 O -0.605 6.605 16 N -0.592 5.592 17 C -0.328 4.328 18 H 0.054 0.946 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.253 1.253 23 H -0.275 1.275 24 H -0.234 1.234 25 C 0.018 3.982 26 C 0.094 3.906 27 H 0.104 0.896 28 O -0.395 6.395 29 C 0.023 3.977 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.154 0.846 39 H 0.413 0.587 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.132 0.868 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.993 -5.297 -0.654 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.028 4.028 4 C -0.179 4.179 5 C -0.264 4.264 6 C 0.325 3.675 7 O -0.450 6.450 8 N -0.360 5.360 9 C 0.039 3.961 10 H 0.102 0.898 11 C -0.083 4.083 12 N -0.226 5.226 13 C -0.088 4.088 14 C 0.236 3.764 15 O -0.489 6.489 16 N -0.234 5.234 17 C -0.457 4.457 18 H 0.072 0.928 19 C -0.214 4.214 20 N -0.575 5.575 21 Si 0.785 3.215 22 H -0.177 1.177 23 H -0.200 1.200 24 H -0.158 1.158 25 C -0.110 4.110 26 C 0.035 3.965 27 H 0.121 0.879 28 O -0.314 6.314 29 C -0.073 4.073 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.171 0.829 39 H 0.250 0.750 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.094 0.906 43 H 0.150 0.850 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.135 0.865 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 26.505 -5.251 -1.509 27.062 hybrid contribution -1.108 -0.506 0.815 1.466 sum 25.396 -5.757 -0.694 26.050 Atomic orbital electron populations 1.21560 0.95278 1.01418 1.00821 1.20827 0.96174 0.93480 1.02714 1.22876 0.89133 0.95110 0.95683 1.21065 1.02963 1.01135 0.92713 1.22482 1.09439 1.03389 0.91124 1.19179 0.79291 0.83958 0.85114 1.90752 1.41713 1.25074 1.87492 1.45786 1.57260 1.27845 1.05078 1.21626 0.91758 0.98566 0.84188 0.89833 1.23064 0.95732 0.95538 0.93921 1.64575 1.02362 1.52552 1.03150 1.22114 0.87739 1.01447 0.97479 1.20835 0.84364 0.83546 0.87644 1.90542 1.85374 1.46820 1.26186 1.42025 1.05281 1.53951 1.22098 1.18981 0.85566 1.36204 1.04944 0.92800 1.26117 0.93927 0.98080 1.03230 1.69808 0.99706 1.47080 1.40885 0.85368 0.79489 0.79372 0.77308 1.17716 1.20007 1.15785 1.23780 0.89889 1.00523 0.96760 1.23069 0.89510 0.92076 0.91837 0.87868 1.87925 1.28716 1.32981 1.81740 1.23060 0.85435 1.00788 0.97989 0.94380 0.92948 0.92550 0.91118 0.89976 0.89762 0.89400 0.89722 0.82873 0.74994 0.91863 0.95624 0.90628 0.85018 0.77522 0.91116 0.91831 0.86538 0.92773 0.92332 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.32 71.98 0.67 -2.96 16 2 C -0.10 -2.20 5.35 29.85 0.16 -2.04 16 3 C -0.03 -0.52 5.36 -17.61 -0.09 -0.61 16 4 C -0.12 -1.49 10.04 71.24 0.72 -0.78 16 5 C -0.24 -5.22 9.63 23.43 0.23 -5.00 16 6 C 0.53 15.26 7.58 86.57 0.66 15.91 16 7 O -0.57 -20.37 10.73 -4.07 -0.04 -20.41 16 8 N -0.71 -17.64 5.01 -441.97 -2.22 -19.86 16 9 C 0.15 4.03 3.08 45.87 0.14 4.17 16 10 H 0.08 2.68 7.53 -2.39 -0.02 2.66 16 11 C 0.05 1.66 5.23 86.40 0.45 2.12 16 12 N -0.50 -15.47 5.10 -886.95 -4.53 -19.99 16 13 C 0.04 1.40 5.28 85.56 0.45 1.85 16 14 C 0.45 21.03 7.41 87.65 0.65 21.68 16 15 O -0.61 -34.48 14.19 -3.07 -0.04 -34.52 16 16 N -0.59 -28.87 5.09 -306.99 -1.56 -30.43 16 17 C -0.33 -19.73 10.16 84.04 0.85 -18.88 16 18 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 19 C -0.01 -0.85 5.50 84.93 0.47 -0.38 16 20 N -0.93 -57.44 13.96 21.66 0.30 -57.14 16 21 Si 0.96 39.74 27.73 68.60 1.90 41.65 16 22 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.23 -8.25 6.52 99.48 0.65 -7.60 16 25 C 0.02 0.39 6.29 86.65 0.54 0.93 16 26 C 0.09 1.93 3.26 31.80 0.10 2.03 16 27 H 0.10 1.69 7.43 -2.39 -0.02 1.67 16 28 O -0.40 -7.87 10.45 -148.98 -1.56 -9.42 16 29 C 0.02 0.27 10.85 113.37 1.23 1.50 16 30 H 0.04 1.32 6.14 -2.39 -0.01 1.30 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.99 6.09 -2.39 -0.01 1.97 16 34 H 0.08 1.46 7.99 -2.39 -0.02 1.44 16 35 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.09 0.78 8.06 -2.39 -0.02 0.76 16 37 H 0.08 0.80 8.00 -2.39 -0.02 0.78 16 38 H 0.15 2.28 8.04 -2.91 -0.02 2.25 16 39 H 0.41 7.61 8.34 -92.71 -0.77 6.83 16 40 H 0.06 2.78 6.86 -2.39 -0.02 2.76 16 41 H 0.03 1.01 7.72 -2.39 -0.02 0.99 16 42 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 43 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.39 15.75 5.76 -92.71 -0.53 15.22 16 45 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 46 H 0.06 1.31 7.96 -2.39 -0.02 1.29 16 47 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 0.51 8.11 -2.38 -0.02 0.49 16 49 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -85.34 402.08 -0.93 -86.26 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -0.41 Total: 44.31 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 7.23 Total: 19.55 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -8.00 Total: -127.42 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -1.64 Total: -64.36 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.90 Total: 41.65 kcal Total: -85.34 -0.93 -86.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212221586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.047 kcal (2) G-P(sol) polarization free energy of solvation -85.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds