Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50694 * 119.99624 * 2 1 4 4 C 1.50698 * 119.99939 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47017 * 94.99804 * 4 2 1 6 6 C 1.50704 * 109.47204 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99884 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00171 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00205 * 179.97438 * 8 6 5 10 10 H 1.09011 * 110.27115 * 35.63579 * 9 8 6 11 11 C 1.53991 * 110.30984 * 273.54907 * 9 8 6 12 12 N 1.47905 * 107.22505 * 242.20865 * 11 9 8 13 13 C 1.46897 * 111.00050 * 214.25344 * 12 11 9 14 14 C 1.50694 * 109.47194 * 169.99666 * 13 12 11 15 15 O 1.21297 * 120.00284 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00402 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00292 * 180.02562 * 16 14 13 18 18 H 1.07992 * 119.99974 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99684 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00312 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99566 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47171 * 60.00435 * 21 19 17 23 23 H 1.48503 * 109.46899 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47565 * 299.99939 * 21 19 17 25 25 C 1.48813 * 105.67450 * 334.90354 * 12 11 9 26 26 C 1.54594 * 110.31120 * 157.82737 * 9 8 6 27 27 H 1.08999 * 110.72080 * 22.51773 * 26 9 8 28 28 O 1.42905 * 110.72510 * 259.23364 * 26 9 8 29 29 C 1.42897 * 113.99820 * 150.00274 * 28 26 9 30 30 H 1.08002 * 119.99522 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00262 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47920 * 270.00432 * 3 2 1 33 33 H 1.09002 * 109.47262 * 30.00738 * 3 2 1 34 34 H 1.09004 * 109.46858 * 150.00544 * 3 2 1 35 35 H 1.08994 * 109.47436 * 334.99594 * 4 2 1 36 36 H 1.09001 * 109.46718 * 214.99437 * 4 2 1 37 37 H 1.09001 * 109.47434 * 59.99996 * 5 4 2 38 38 H 1.09001 * 109.47076 * 299.99414 * 5 4 2 39 39 H 0.97003 * 119.99879 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.91707 * 1.65925 * 11 9 8 41 41 H 1.09002 * 109.91668 * 122.75716 * 11 9 8 42 42 H 1.09000 * 109.47143 * 290.00333 * 13 12 11 43 43 H 1.09011 * 109.46966 * 49.99945 * 13 12 11 44 44 H 0.97004 * 119.99442 * 0.02562 * 16 14 13 45 45 H 0.96997 * 119.99965 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.51915 * 280.54171 * 25 12 11 47 47 H 1.09004 * 110.69711 * 157.49494 * 25 12 11 48 48 H 1.08998 * 109.47183 * 180.02562 * 29 28 26 49 49 H 1.09010 * 109.47067 * 299.99939 * 29 28 26 50 50 H 1.09001 * 109.47255 * 59.99383 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1814 -2.9881 -1.4383 7 8 3.4053 -3.5595 -0.3923 8 7 3.6061 -3.5205 -2.6014 9 6 4.3395 -4.7886 -2.6019 10 1 3.9527 -5.4490 -1.8256 11 6 5.8435 -4.5363 -2.3883 12 7 6.5448 -5.0194 -3.5976 13 6 7.8585 -5.5805 -3.2555 14 6 8.4353 -6.2793 -4.4596 15 8 7.8130 -6.3075 -5.5004 16 7 9.6428 -6.8729 -4.3802 17 6 10.1677 -7.5082 -5.4758 18 1 9.6140 -7.5326 -6.4026 19 6 11.4123 -8.1206 -5.3937 20 7 12.0859 -8.0914 -4.2657 21 14 12.1279 -8.9856 -6.8868 22 1 12.2799 -8.0116 -7.9974 23 1 13.4556 -9.5536 -6.5406 24 1 11.2169 -10.0796 -7.3090 25 6 5.6558 -6.0547 -4.1912 26 6 4.2367 -5.4675 -3.9870 27 1 4.0079 -4.7339 -4.7600 28 8 3.2568 -6.5076 -3.9689 29 6 2.6123 -6.7207 -5.2264 30 1 -0.5399 -0.9354 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2451 1.6199 -1.0275 33 1 1.4744 2.0647 0.5140 34 1 3.0159 1.1747 0.5138 35 1 1.4387 -2.0856 0.4334 36 1 2.9743 -1.1990 0.5888 37 1 3.0523 -0.9028 -1.8718 38 1 1.5166 -1.7893 -2.0272 39 1 3.4260 -3.0640 -3.4381 40 1 6.0258 -3.4699 -2.2545 41 1 6.1915 -5.0850 -1.5131 42 1 8.5274 -4.7773 -2.9464 43 1 7.7472 -6.2949 -2.4396 44 1 10.1403 -6.8507 -3.5478 45 1 12.9545 -8.5192 -4.2083 46 1 5.7614 -6.9998 -3.6587 47 1 5.8697 -6.1837 -5.2523 48 1 1.8832 -7.5251 -5.1292 49 1 2.1051 -5.8063 -5.5343 50 1 3.3566 -6.9929 -5.9747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212346796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -93.373333 kcal Electronic energy + Delta-G solvation = -29457.157695 eV Core-core repulsion = 25292.032032 eV Total energy + Delta-G solvation = -4165.125663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38888 -39.17060 -38.05041 -36.81788 -36.44468 -34.50417 -33.82369 -31.78075 -31.32209 -30.27057 -28.18503 -27.62533 -27.03618 -26.06874 -24.81543 -23.92788 -21.57434 -20.97839 -20.26958 -19.27233 -18.76357 -17.92154 -17.33453 -17.07106 -16.28448 -16.00677 -15.93354 -15.37716 -15.06709 -14.81491 -14.73432 -14.50118 -14.41913 -14.14036 -13.98723 -13.66067 -13.53837 -13.46515 -13.01792 -12.90067 -12.49388 -12.31473 -12.18201 -12.04494 -11.86597 -11.67928 -11.56249 -11.50793 -11.37776 -11.31750 -11.21413 -11.01185 -10.68378 -10.45016 -10.24439 -10.09589 -9.70516 -9.50036 -9.37238 -9.20659 -8.43042 -8.06305 -7.94809 -6.44335 -3.85526 1.83972 2.48073 2.94644 3.17836 3.24207 3.28024 3.55298 3.85830 4.08892 4.29998 4.36549 4.50220 4.55488 4.67813 4.74321 4.86833 4.94000 4.96228 5.05555 5.17655 5.19017 5.22479 5.23218 5.32145 5.34665 5.39168 5.44685 5.53774 5.59897 5.63014 5.64092 5.72001 5.79728 5.81651 5.84729 5.89517 6.08735 6.22425 6.27784 6.34107 6.51788 6.52895 6.94527 7.17314 7.21085 7.32796 7.52282 8.02244 8.06221 8.57857 9.14377 9.50222 10.01352 10.73099 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002003 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.484741 B =13976.878560 C =14970.963597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.134 4.134 6 C 0.513 3.487 7 O -0.539 6.539 8 N -0.720 5.720 9 C 0.138 3.862 10 H 0.105 0.895 11 C 0.027 3.973 12 N -0.491 5.491 13 C 0.036 3.964 14 C 0.442 3.558 15 O -0.584 6.584 16 N -0.559 5.559 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.900 5.900 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.023 3.977 26 C 0.076 3.924 27 H 0.080 0.920 28 O -0.379 6.379 29 C 0.031 3.969 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.401 0.599 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.393 0.607 45 H 0.273 0.727 46 H 0.050 0.950 47 H 0.124 0.876 48 H 0.084 0.916 49 H 0.039 0.961 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.568 13.919 5.752 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.179 4.179 4 C -0.109 4.109 5 C -0.174 4.174 6 C 0.299 3.701 7 O -0.415 6.415 8 N -0.371 5.371 9 C 0.032 3.968 10 H 0.122 0.878 11 C -0.102 4.102 12 N -0.217 5.217 13 C -0.095 4.095 14 C 0.227 3.773 15 O -0.469 6.469 16 N -0.195 5.195 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.541 5.541 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.105 4.105 26 C 0.017 3.983 27 H 0.098 0.902 28 O -0.297 6.297 29 C -0.065 4.065 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.235 0.765 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.141 0.859 48 H 0.103 0.897 49 H 0.058 0.942 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.557 13.703 5.671 25.348 hybrid contribution 0.658 -0.749 -0.253 1.029 sum -19.898 12.954 5.418 24.354 Atomic orbital electron populations 1.23725 0.95260 1.01880 1.02571 1.21793 0.95424 0.95732 0.99508 1.20894 1.00316 0.94454 1.02193 1.20437 1.00958 0.94246 0.95236 1.21634 1.01176 0.95057 0.99491 1.20733 0.78899 0.86850 0.83574 1.90719 1.56910 1.62545 1.31362 1.46092 1.57699 1.24021 1.09320 1.21848 0.91610 0.84952 0.98381 0.87756 1.23323 0.91956 1.01983 0.92978 1.64654 1.01553 1.33094 1.22383 1.22126 0.91693 0.98787 0.96921 1.19670 0.83579 0.84468 0.89547 1.90420 1.60580 1.64516 1.31355 1.41842 1.15919 1.47701 1.14071 1.19647 1.01126 1.29818 0.92448 0.87915 1.25277 0.96434 0.97952 0.98205 1.69604 1.14475 1.44576 1.25424 0.85910 0.77900 0.79474 0.80880 1.19876 1.20953 1.19915 1.23904 0.88673 0.93264 1.04629 1.23381 0.89475 0.89583 0.95903 0.90179 1.87898 1.54295 1.55231 1.32300 1.22810 0.96966 1.00735 0.85999 0.88452 0.88524 0.91371 0.91904 0.91660 0.90528 0.90345 0.88668 0.88873 0.76470 0.89818 0.92694 0.88942 0.93003 0.77385 0.91749 0.93139 0.85858 0.89705 0.94201 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.29 13.89 29.01 0.40 -0.89 16 2 C -0.12 -0.87 5.31 -101.07 -0.54 -1.40 16 3 C -0.12 -0.70 10.03 36.00 0.36 -0.34 16 4 C -0.07 -0.58 4.67 -27.88 -0.13 -0.71 16 5 C -0.13 -0.97 5.68 -27.88 -0.16 -1.13 16 6 C 0.51 5.57 7.82 -10.98 -0.09 5.48 16 7 O -0.54 -8.02 15.68 5.56 0.09 -7.94 16 8 N -0.72 -7.27 5.03 -52.49 -0.26 -7.54 16 9 C 0.14 1.77 3.06 -66.58 -0.20 1.57 16 10 H 0.10 1.54 7.58 -51.92 -0.39 1.15 16 11 C 0.03 0.38 6.48 -2.75 -0.02 0.36 16 12 N -0.49 -8.19 5.27 -231.64 -1.22 -9.41 16 13 C 0.04 0.66 5.52 -4.98 -0.03 0.63 16 14 C 0.44 10.26 7.50 -10.99 -0.08 10.18 16 15 O -0.58 -15.05 13.11 5.54 0.07 -14.98 16 16 N -0.56 -14.06 5.29 -10.97 -0.06 -14.12 16 17 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 21 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.02 0.39 5.04 -1.74 -0.01 0.38 16 26 C 0.08 1.00 3.26 -24.87 -0.08 0.92 16 27 H 0.08 0.93 7.43 -51.93 -0.39 0.55 16 28 O -0.38 -5.14 10.44 -35.23 -0.37 -5.51 16 29 C 0.03 0.33 10.85 101.05 1.10 1.42 16 30 H 0.10 0.62 7.99 -52.49 -0.42 0.20 16 31 H 0.10 0.54 8.04 -52.49 -0.42 0.11 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.32 8.06 -51.93 -0.42 -0.10 16 34 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 36 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.01 8.35 -40.82 -0.34 2.67 16 40 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.05 0.88 7.81 -51.92 -0.41 0.47 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.05 0.91 8.02 -51.93 -0.42 0.50 16 47 H 0.12 2.41 6.00 -51.93 -0.31 2.10 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.04 0.34 8.12 -51.92 -0.42 -0.08 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 412.19 15.07 6.21 6.21 Total: -1.00 -32.48 412.19 -7.91 -40.39 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -8.36 Total: 12.12 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 0.29 Total: 8.56 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.82 Total: -54.70 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.21 Total: -28.43 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.48 -7.91 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212346796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.988 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds