Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50694 * 119.99624 * 2 1 4 4 C 1.50698 * 119.99939 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47017 * 94.99804 * 4 2 1 6 6 C 1.50704 * 109.47204 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99884 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00171 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00205 * 179.97438 * 8 6 5 10 10 H 1.09011 * 110.27115 * 35.63579 * 9 8 6 11 11 C 1.53991 * 110.30984 * 273.54907 * 9 8 6 12 12 N 1.47905 * 107.22505 * 242.20865 * 11 9 8 13 13 C 1.46897 * 111.00050 * 214.25344 * 12 11 9 14 14 C 1.50694 * 109.47194 * 169.99666 * 13 12 11 15 15 O 1.21297 * 120.00284 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00402 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00292 * 180.02562 * 16 14 13 18 18 H 1.07992 * 119.99974 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99684 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00312 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99566 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47171 * 60.00435 * 21 19 17 23 23 H 1.48503 * 109.46899 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47565 * 299.99939 * 21 19 17 25 25 C 1.48813 * 105.67450 * 334.90354 * 12 11 9 26 26 C 1.54594 * 110.31120 * 157.82737 * 9 8 6 27 27 H 1.08999 * 110.72080 * 22.51773 * 26 9 8 28 28 O 1.42905 * 110.72510 * 259.23364 * 26 9 8 29 29 C 1.42897 * 113.99820 * 150.00274 * 28 26 9 30 30 H 1.08002 * 119.99522 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00262 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47920 * 270.00432 * 3 2 1 33 33 H 1.09002 * 109.47262 * 30.00738 * 3 2 1 34 34 H 1.09004 * 109.46858 * 150.00544 * 3 2 1 35 35 H 1.08994 * 109.47436 * 334.99594 * 4 2 1 36 36 H 1.09001 * 109.46718 * 214.99437 * 4 2 1 37 37 H 1.09001 * 109.47434 * 59.99996 * 5 4 2 38 38 H 1.09001 * 109.47076 * 299.99414 * 5 4 2 39 39 H 0.97003 * 119.99879 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.91707 * 1.65925 * 11 9 8 41 41 H 1.09002 * 109.91668 * 122.75716 * 11 9 8 42 42 H 1.09000 * 109.47143 * 290.00333 * 13 12 11 43 43 H 1.09011 * 109.46966 * 49.99945 * 13 12 11 44 44 H 0.97004 * 119.99442 * 0.02562 * 16 14 13 45 45 H 0.96997 * 119.99965 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.51915 * 280.54171 * 25 12 11 47 47 H 1.09004 * 110.69711 * 157.49494 * 25 12 11 48 48 H 1.08998 * 109.47183 * 180.02562 * 29 28 26 49 49 H 1.09010 * 109.47067 * 299.99939 * 29 28 26 50 50 H 1.09001 * 109.47255 * 59.99383 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1814 -2.9881 -1.4383 7 8 3.4053 -3.5595 -0.3923 8 7 3.6061 -3.5205 -2.6014 9 6 4.3395 -4.7886 -2.6019 10 1 3.9527 -5.4490 -1.8256 11 6 5.8435 -4.5363 -2.3883 12 7 6.5448 -5.0194 -3.5976 13 6 7.8585 -5.5805 -3.2555 14 6 8.4353 -6.2793 -4.4596 15 8 7.8130 -6.3075 -5.5004 16 7 9.6428 -6.8729 -4.3802 17 6 10.1677 -7.5082 -5.4758 18 1 9.6140 -7.5326 -6.4026 19 6 11.4123 -8.1206 -5.3937 20 7 12.0859 -8.0914 -4.2657 21 14 12.1279 -8.9856 -6.8868 22 1 12.2799 -8.0116 -7.9974 23 1 13.4556 -9.5536 -6.5406 24 1 11.2169 -10.0796 -7.3090 25 6 5.6558 -6.0547 -4.1912 26 6 4.2367 -5.4675 -3.9870 27 1 4.0079 -4.7339 -4.7600 28 8 3.2568 -6.5076 -3.9689 29 6 2.6123 -6.7207 -5.2264 30 1 -0.5399 -0.9354 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2451 1.6199 -1.0275 33 1 1.4744 2.0647 0.5140 34 1 3.0159 1.1747 0.5138 35 1 1.4387 -2.0856 0.4334 36 1 2.9743 -1.1990 0.5888 37 1 3.0523 -0.9028 -1.8718 38 1 1.5166 -1.7893 -2.0272 39 1 3.4260 -3.0640 -3.4381 40 1 6.0258 -3.4699 -2.2545 41 1 6.1915 -5.0850 -1.5131 42 1 8.5274 -4.7773 -2.9464 43 1 7.7472 -6.2949 -2.4396 44 1 10.1403 -6.8507 -3.5478 45 1 12.9545 -8.5192 -4.2083 46 1 5.7614 -6.9998 -3.6587 47 1 5.8697 -6.1837 -5.2523 48 1 1.8832 -7.5251 -5.1292 49 1 2.1051 -5.8063 -5.5343 50 1 3.3566 -6.9929 -5.9747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212346796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -118.292172 kcal Electronic energy + Delta-G solvation = -29458.238257 eV Core-core repulsion = 25292.032032 eV Total energy + Delta-G solvation = -4166.206225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46002 -40.45873 -39.53675 -37.79358 -37.26884 -36.03894 -35.34561 -33.34113 -32.52243 -31.40444 -29.34950 -28.38820 -28.04884 -27.22984 -26.14893 -25.09955 -22.82021 -22.01786 -21.30127 -21.03343 -19.88872 -19.30710 -18.29292 -18.12031 -17.70303 -17.26579 -16.72170 -16.60689 -16.53434 -16.10081 -15.84637 -15.72893 -15.45539 -15.33913 -15.07940 -14.90992 -14.76450 -14.30715 -14.04675 -13.89976 -13.83343 -13.50745 -13.32146 -13.12859 -12.96905 -12.88639 -12.81146 -12.62695 -12.49978 -12.45630 -12.43611 -12.13554 -11.94939 -11.84703 -11.77855 -11.48581 -11.02525 -10.70115 -10.32464 -10.07954 -10.01503 -9.88367 -9.47008 -8.47400 -5.96373 1.33067 1.39083 1.41376 1.52333 1.63427 2.00995 2.07992 2.26442 2.48333 2.94407 3.18832 3.27326 3.53059 3.58011 3.75862 3.88367 4.00657 4.07551 4.17462 4.20618 4.29029 4.30354 4.38237 4.40420 4.46509 4.50285 4.54744 4.62933 4.68718 4.72328 4.75859 4.80655 4.83883 4.90352 5.00963 5.09703 5.12546 5.18496 5.22277 5.39867 5.41443 5.66052 5.77352 5.78618 6.01783 6.02106 6.16693 6.52789 6.58025 7.10736 7.24659 7.52931 8.07683 8.69726 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002003 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.484741 B =13976.878560 C =14970.963597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.123 4.123 6 C 0.512 3.488 7 O -0.583 6.583 8 N -0.708 5.708 9 C 0.147 3.853 10 H 0.086 0.914 11 C 0.031 3.969 12 N -0.496 5.496 13 C 0.045 3.955 14 C 0.440 3.560 15 O -0.611 6.611 16 N -0.571 5.571 17 C -0.333 4.333 18 H 0.082 0.918 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.024 3.976 26 C 0.090 3.910 27 H 0.102 0.898 28 O -0.397 6.397 29 C 0.024 3.976 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.417 0.583 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.029 0.971 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.064 0.936 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.671 15.491 5.329 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.131 4.131 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.163 4.163 6 C 0.300 3.700 7 O -0.463 6.463 8 N -0.360 5.360 9 C 0.041 3.959 10 H 0.104 0.896 11 C -0.097 4.097 12 N -0.222 5.222 13 C -0.086 4.086 14 C 0.228 3.772 15 O -0.498 6.498 16 N -0.208 5.208 17 C -0.462 4.462 18 H 0.100 0.900 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.104 4.104 26 C 0.031 3.969 27 H 0.120 0.880 28 O -0.316 6.316 29 C -0.071 4.071 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.254 0.746 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.082 0.918 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.680 15.303 5.237 27.049 hybrid contribution 0.917 -1.237 -0.104 1.543 sum -20.763 14.066 5.133 25.599 Atomic orbital electron populations 1.23855 0.95217 1.02441 1.01894 1.21795 0.95576 0.95551 1.00167 1.20914 1.00090 0.93919 1.02924 1.20374 1.00186 0.94589 0.95610 1.21643 1.01915 0.93330 0.99366 1.21383 0.78263 0.87534 0.82795 1.90708 1.58647 1.63953 1.32977 1.45950 1.56947 1.22970 1.10158 1.21533 0.91051 0.85945 0.97420 0.89639 1.23345 0.92418 1.02376 0.91608 1.64642 1.01108 1.32619 1.23830 1.22043 0.92717 0.99312 0.94524 1.20559 0.82652 0.83334 0.90668 1.90416 1.61093 1.65161 1.33095 1.41913 1.16739 1.48421 1.13705 1.19646 1.02060 1.31813 0.92716 0.89968 1.26071 0.96210 0.98052 1.01014 1.69672 1.14786 1.44853 1.26809 0.84971 0.77446 0.78301 0.77511 1.19554 1.19632 1.19702 1.23722 0.91385 0.92894 1.02405 1.23203 0.87412 0.89635 0.96665 0.88021 1.87885 1.54198 1.55437 1.34036 1.23025 0.96955 1.02594 0.84565 0.88557 0.87373 0.90328 0.91297 0.91977 0.92143 0.91762 0.86339 0.86674 0.74551 0.88600 0.92930 0.86826 0.91664 0.77082 0.91299 0.95232 0.88850 0.88156 0.91763 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.21 13.89 67.77 0.94 -1.27 16 2 C -0.13 -1.59 5.31 -16.50 -0.09 -1.67 16 3 C -0.12 -1.15 10.03 71.23 0.71 -0.44 16 4 C -0.07 -1.06 4.67 29.85 0.14 -0.92 16 5 C -0.12 -1.49 5.68 29.85 0.17 -1.32 16 6 C 0.51 10.28 7.82 87.66 0.69 10.96 16 7 O -0.58 -17.17 15.68 -3.03 -0.05 -17.22 16 8 N -0.71 -12.78 5.03 -438.37 -2.20 -14.98 16 9 C 0.15 3.63 3.06 45.87 0.14 3.77 16 10 H 0.09 2.51 7.58 -2.38 -0.02 2.49 16 11 C 0.03 0.84 6.48 86.44 0.56 1.41 16 12 N -0.50 -16.29 5.27 -886.79 -4.67 -20.95 16 13 C 0.05 1.63 5.52 85.56 0.47 2.10 16 14 C 0.44 20.88 7.50 87.65 0.66 21.54 16 15 O -0.61 -32.49 13.11 -3.08 -0.04 -32.53 16 16 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 17 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 18 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 19 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 20 N -0.92 -49.87 13.05 21.66 0.28 -49.58 16 21 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 C 0.02 0.83 5.04 86.59 0.44 1.27 16 26 C 0.09 2.30 3.26 31.80 0.10 2.41 16 27 H 0.10 2.15 7.43 -2.39 -0.02 2.13 16 28 O -0.40 -10.46 10.44 -148.98 -1.56 -12.01 16 29 C 0.02 0.47 10.85 113.37 1.23 1.70 16 30 H 0.10 1.08 7.99 -2.91 -0.02 1.05 16 31 H 0.11 0.95 8.04 -2.91 -0.02 0.93 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.57 8.06 -2.39 -0.02 0.55 16 34 H 0.06 0.62 8.08 -2.38 -0.02 0.60 16 35 H 0.06 1.10 7.94 -2.39 -0.02 1.08 16 36 H 0.06 1.15 8.06 -2.39 -0.02 1.13 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.42 4.93 8.35 -92.71 -0.77 4.15 16 40 H 0.10 2.37 7.92 -2.39 -0.02 2.35 16 41 H 0.05 1.45 7.57 -2.39 -0.02 1.44 16 42 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 43 H 0.07 2.19 7.81 -2.38 -0.02 2.17 16 44 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 45 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.03 1.11 8.02 -2.39 -0.02 1.09 16 47 H 0.09 3.78 6.00 -2.38 -0.01 3.77 16 48 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 49 H 0.06 0.93 8.12 -2.38 -0.02 0.91 16 50 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -71.90 412.19 -0.95 -72.85 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.56 Total: 39.33 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 7.44 Total: 21.32 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -8.21 Total: -116.51 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -1.64 Total: -61.76 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.90 -0.95 -72.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212346796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.446 kcal (2) G-P(sol) polarization free energy of solvation -71.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds