Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99763 * 2 1 4 4 C 1.52996 * 109.47436 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.46886 * 239.99468 * 3 2 1 6 6 C 1.50699 * 109.47067 * 119.99731 * 3 2 1 7 7 O 1.21279 * 120.00305 * 359.97438 * 6 3 2 8 8 N 1.34783 * 119.99614 * 179.97438 * 6 3 2 9 9 C 1.46507 * 119.99616 * 179.97438 * 8 6 3 10 10 H 1.08993 * 110.27649 * 34.30451 * 9 8 6 11 11 C 1.53993 * 110.30901 * 272.21102 * 9 8 6 12 12 N 1.48125 * 106.94656 * 242.17893 * 11 9 8 13 13 C 1.46893 * 111.00838 * 214.20363 * 12 11 9 14 14 C 1.50704 * 109.47215 * 301.04762 * 13 12 11 15 15 O 1.21293 * 119.99806 * 354.03788 * 14 13 12 16 16 N 1.34767 * 120.00416 * 174.04303 * 14 13 12 17 17 C 1.37102 * 120.00274 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00015 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99907 * 179.97438 * 17 16 14 20 20 N 1.31410 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99723 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47413 * 89.99978 * 21 19 17 23 23 H 1.48502 * 109.47124 * 210.00014 * 21 19 17 24 24 H 1.48501 * 109.47123 * 329.99306 * 21 19 17 25 25 C 1.48539 * 105.86483 * 334.74997 * 12 11 9 26 26 C 1.54592 * 110.30563 * 156.38962 * 9 8 6 27 27 H 1.09004 * 110.72814 * 22.43480 * 26 9 8 28 28 O 1.42902 * 110.72548 * 259.32934 * 26 9 8 29 29 C 1.42905 * 114.00039 * 149.99876 * 28 26 9 30 30 H 1.07993 * 120.00314 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99593 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00189 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47241 * 180.02562 * 4 3 2 34 34 H 1.09008 * 109.47005 * 299.99993 * 4 3 2 35 35 H 1.08998 * 109.47331 * 59.99719 * 4 3 2 36 36 H 1.09005 * 109.47333 * 299.99841 * 5 3 2 37 37 H 1.08998 * 109.47211 * 60.00287 * 5 3 2 38 38 H 1.09000 * 109.47143 * 180.02562 * 5 3 2 39 39 H 0.96997 * 120.00336 * 359.97438 * 8 6 3 40 40 H 1.08996 * 109.91885 * 1.56172 * 11 9 8 41 41 H 1.08996 * 109.91555 * 122.85777 * 11 9 8 42 42 H 1.09001 * 109.47561 * 61.04473 * 13 12 11 43 43 H 1.08997 * 109.47364 * 181.04629 * 13 12 11 44 44 H 0.97008 * 119.99918 * 359.97438 * 16 14 13 45 45 H 0.97002 * 119.99607 * 180.02562 * 20 19 17 46 46 H 1.08995 * 110.66204 * 280.73506 * 25 12 11 47 47 H 1.09000 * 110.80803 * 157.67231 * 25 12 11 48 48 H 1.08993 * 109.46867 * 179.97438 * 29 28 26 49 49 H 1.08992 * 109.47368 * 300.00404 * 29 28 26 50 50 H 1.09002 * 109.46618 * 59.99952 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9298 1.3850 1.2305 7 8 2.9346 0.4723 2.0291 8 7 3.6993 2.4709 1.4435 9 6 4.5411 2.5488 2.6400 10 1 4.9137 1.5593 2.9048 11 6 3.7475 3.1528 3.8134 12 7 4.4302 4.4110 4.1940 13 6 4.3431 4.6401 5.6424 14 6 2.8949 4.7080 6.0540 15 8 2.0232 4.6869 5.2109 16 7 2.5685 4.7923 7.3588 17 6 1.2510 4.8535 7.7333 18 1 0.4748 4.8346 6.9826 19 6 0.9144 4.9398 9.0787 20 7 1.8589 4.9623 9.9921 21 14 -0.8806 5.0240 9.5888 22 1 -1.3994 3.6492 9.8029 23 1 -1.0012 5.8003 10.8490 24 1 -1.6682 5.6895 8.5202 25 6 5.8432 4.2524 3.7642 26 6 5.7200 3.5206 2.4042 27 1 5.4865 4.2236 1.6046 28 8 6.9178 2.7999 2.1075 29 6 7.8235 3.5037 1.2551 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.6142 3.4120 -0.0011 34 1 0.4429 2.4101 -0.8909 35 1 0.4422 2.4105 0.8891 36 1 3.6515 0.5576 -1.2491 37 1 2.3166 1.3283 -2.1392 38 1 3.4885 2.3299 -1.2490 39 1 3.6958 3.2007 0.8046 40 1 2.7249 3.3635 3.5007 41 1 3.7461 2.4610 4.6557 42 1 4.8327 3.8215 6.1699 43 1 4.8362 5.5796 5.8920 44 1 3.2656 4.8088 8.0332 45 1 1.6238 5.0222 10.9313 46 1 6.3968 3.6443 4.4796 47 1 6.3205 5.2240 3.6365 48 1 8.7069 2.8902 1.0781 49 1 7.3347 3.7201 0.3052 50 1 8.1200 4.4378 1.7322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213267086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -82.685808 kcal Electronic energy + Delta-G solvation = -30653.219147 eV Core-core repulsion = 26488.556930 eV Total energy + Delta-G solvation = -4164.662217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56666 -39.34727 -38.10982 -36.72388 -36.23991 -34.45165 -33.81639 -31.41628 -31.13806 -30.12331 -28.12427 -27.62471 -27.18105 -25.97062 -24.44644 -23.87190 -21.69174 -21.37904 -20.44171 -19.12307 -18.74694 -17.85513 -17.25374 -17.16403 -16.21610 -15.96575 -15.81990 -15.32541 -15.15046 -14.85476 -14.74556 -14.47948 -14.24570 -14.12546 -13.91698 -13.56397 -13.38382 -12.91322 -12.77039 -12.57515 -12.46237 -12.28370 -12.22535 -12.00845 -11.89907 -11.81372 -11.64173 -11.47870 -11.35257 -11.21090 -10.93543 -10.90736 -10.84449 -10.37927 -10.20825 -9.99289 -9.78698 -9.48230 -9.40671 -9.03788 -8.47145 -8.04593 -7.93258 -6.40338 -3.80991 2.12976 2.66715 3.08736 3.19288 3.27752 3.33353 3.45672 3.91569 4.10918 4.31996 4.36920 4.40754 4.55078 4.65823 4.75410 4.84989 4.90681 5.01992 5.09275 5.15320 5.22300 5.25732 5.29549 5.34808 5.42448 5.46358 5.46933 5.49628 5.56251 5.63222 5.71465 5.77435 5.82074 5.84545 5.87725 6.01170 6.04679 6.26287 6.32163 6.50174 6.60912 6.63871 6.87164 7.10532 7.15476 7.46762 7.56672 8.07139 8.23645 8.62654 9.19320 9.55284 10.06798 10.77456 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.003227 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.578411 B = 8674.036508 C =11065.941642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.055 4.055 4 C -0.145 4.145 5 C -0.135 4.135 6 C 0.528 3.472 7 O -0.530 6.530 8 N -0.716 5.716 9 C 0.135 3.865 10 H 0.104 0.896 11 C 0.041 3.959 12 N -0.489 5.489 13 C 0.036 3.964 14 C 0.442 3.558 15 O -0.578 6.578 16 N -0.563 5.563 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.015 3.985 26 C 0.081 3.919 27 H 0.082 0.918 28 O -0.378 6.378 29 C 0.031 3.969 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.398 0.602 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 -3.562 -21.428 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.144 4.144 3 C -0.058 4.058 4 C -0.203 4.203 5 C -0.192 4.192 6 C 0.314 3.686 7 O -0.406 6.406 8 N -0.368 5.368 9 C 0.030 3.970 10 H 0.122 0.878 11 C -0.088 4.088 12 N -0.214 5.214 13 C -0.096 4.096 14 C 0.227 3.773 15 O -0.462 6.462 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.114 4.114 26 C 0.022 3.978 27 H 0.100 0.900 28 O -0.295 6.295 29 C -0.065 4.065 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.233 0.767 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.167 -3.964 -21.366 23.215 hybrid contribution 0.022 0.034 0.984 0.985 sum 8.190 -3.930 -20.382 22.314 Atomic orbital electron populations 1.23985 0.95900 1.02327 1.00617 1.22464 0.95633 0.96490 0.99798 1.19894 0.95720 0.96193 0.93970 1.21970 0.98863 0.96159 1.03285 1.21801 0.99191 1.02392 0.95842 1.20403 0.79532 0.81737 0.86965 1.90717 1.65131 1.37977 1.46745 1.45961 1.44996 1.20925 1.24873 1.21925 0.88787 1.00637 0.85664 0.87835 1.23297 1.00239 0.89463 0.95756 1.64603 1.08552 1.33876 1.14370 1.22115 0.97460 1.01958 0.88024 1.19673 0.89392 0.84673 0.83517 1.90506 1.49984 1.55302 1.50448 1.41851 1.08702 1.64126 1.05290 1.19691 0.83579 1.47290 0.92202 0.87931 1.25258 0.99877 0.97328 0.95459 1.69613 1.32772 1.50493 1.01435 0.85864 0.82121 0.78336 0.78016 1.20401 1.20925 1.19403 1.23645 0.91564 1.00440 0.95765 1.23240 0.84648 0.92802 0.97137 0.89999 1.87949 1.29842 1.43174 1.68579 1.22808 0.93391 0.97290 0.93055 0.87778 0.88267 0.86945 0.91710 0.91092 0.91221 0.91926 0.91230 0.91971 0.76688 0.87625 0.92996 0.93129 0.88922 0.77484 0.91879 0.92439 0.89499 0.89621 0.94014 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 13.70 29.01 0.40 -1.55 16 2 C -0.13 -1.40 8.00 -36.03 -0.29 -1.69 16 3 C -0.05 -0.57 0.84 -156.82 -0.13 -0.70 16 4 C -0.15 -1.37 7.02 37.16 0.26 -1.11 16 5 C -0.13 -1.02 8.35 37.16 0.31 -0.71 16 6 C 0.53 7.33 6.47 -10.98 -0.07 7.26 16 7 O -0.53 -9.69 15.71 5.56 0.09 -9.60 16 8 N -0.72 -8.74 4.80 -52.49 -0.25 -8.99 16 9 C 0.14 1.90 3.08 -66.57 -0.20 1.70 16 10 H 0.10 1.65 7.53 -51.93 -0.39 1.26 16 11 C 0.04 0.72 5.19 -2.63 -0.01 0.71 16 12 N -0.49 -8.09 5.12 -231.70 -1.19 -9.28 16 13 C 0.04 0.65 5.30 -4.98 -0.03 0.63 16 14 C 0.44 10.54 7.39 -10.99 -0.08 10.46 16 15 O -0.58 -15.61 14.10 5.55 0.08 -15.53 16 16 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 17 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 21 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.01 0.19 6.28 -1.89 -0.01 0.18 16 26 C 0.08 0.93 3.27 -24.87 -0.08 0.85 16 27 H 0.08 0.81 7.43 -51.93 -0.39 0.42 16 28 O -0.38 -4.30 10.44 -35.23 -0.37 -4.67 16 29 C 0.03 0.24 10.85 101.05 1.10 1.33 16 30 H 0.10 0.98 5.69 -52.49 -0.30 0.68 16 31 H 0.10 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.06 0.54 7.57 -51.93 -0.39 0.15 16 34 H 0.07 0.53 7.50 -51.92 -0.39 0.14 16 35 H 0.07 0.79 7.50 -51.93 -0.39 0.40 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 39 H 0.40 3.75 7.20 -40.82 -0.29 3.46 16 40 H 0.11 2.17 6.82 -51.93 -0.35 1.81 16 41 H 0.05 1.01 7.72 -51.93 -0.40 0.61 16 42 H 0.05 0.85 8.01 -51.93 -0.42 0.44 16 43 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.06 0.74 7.95 -51.93 -0.41 0.32 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 50 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -34.19 405.21 -7.13 -41.32 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -8.15 Total: 13.60 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 0.91 Total: 9.33 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.77 Total: -56.87 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.20 Total: -29.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.19 -7.13 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213267086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.368 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds