Wall clock time and date at job start Sat Apr 11 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99763 * 2 1 4 4 C 1.52996 * 109.47436 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.46886 * 239.99468 * 3 2 1 6 6 C 1.50699 * 109.47067 * 119.99731 * 3 2 1 7 7 O 1.21279 * 120.00305 * 359.97438 * 6 3 2 8 8 N 1.34783 * 119.99614 * 179.97438 * 6 3 2 9 9 C 1.46507 * 119.99616 * 179.97438 * 8 6 3 10 10 H 1.08993 * 110.27649 * 34.30451 * 9 8 6 11 11 C 1.53993 * 110.30901 * 272.21102 * 9 8 6 12 12 N 1.48125 * 106.94656 * 242.17893 * 11 9 8 13 13 C 1.46893 * 111.00838 * 214.20363 * 12 11 9 14 14 C 1.50704 * 109.47215 * 301.04762 * 13 12 11 15 15 O 1.21293 * 119.99806 * 354.03788 * 14 13 12 16 16 N 1.34767 * 120.00416 * 174.04303 * 14 13 12 17 17 C 1.37102 * 120.00274 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00015 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99907 * 179.97438 * 17 16 14 20 20 N 1.31410 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99723 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47413 * 89.99978 * 21 19 17 23 23 H 1.48502 * 109.47124 * 210.00014 * 21 19 17 24 24 H 1.48501 * 109.47123 * 329.99306 * 21 19 17 25 25 C 1.48539 * 105.86483 * 334.74997 * 12 11 9 26 26 C 1.54592 * 110.30563 * 156.38962 * 9 8 6 27 27 H 1.09004 * 110.72814 * 22.43480 * 26 9 8 28 28 O 1.42902 * 110.72548 * 259.32934 * 26 9 8 29 29 C 1.42905 * 114.00039 * 149.99876 * 28 26 9 30 30 H 1.07993 * 120.00314 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99593 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00189 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47241 * 180.02562 * 4 3 2 34 34 H 1.09008 * 109.47005 * 299.99993 * 4 3 2 35 35 H 1.08998 * 109.47331 * 59.99719 * 4 3 2 36 36 H 1.09005 * 109.47333 * 299.99841 * 5 3 2 37 37 H 1.08998 * 109.47211 * 60.00287 * 5 3 2 38 38 H 1.09000 * 109.47143 * 180.02562 * 5 3 2 39 39 H 0.96997 * 120.00336 * 359.97438 * 8 6 3 40 40 H 1.08996 * 109.91885 * 1.56172 * 11 9 8 41 41 H 1.08996 * 109.91555 * 122.85777 * 11 9 8 42 42 H 1.09001 * 109.47561 * 61.04473 * 13 12 11 43 43 H 1.08997 * 109.47364 * 181.04629 * 13 12 11 44 44 H 0.97008 * 119.99918 * 359.97438 * 16 14 13 45 45 H 0.97002 * 119.99607 * 180.02562 * 20 19 17 46 46 H 1.08995 * 110.66204 * 280.73506 * 25 12 11 47 47 H 1.09000 * 110.80803 * 157.67231 * 25 12 11 48 48 H 1.08993 * 109.46867 * 179.97438 * 29 28 26 49 49 H 1.08992 * 109.47368 * 300.00404 * 29 28 26 50 50 H 1.09002 * 109.46618 * 59.99952 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9298 1.3850 1.2305 7 8 2.9346 0.4723 2.0291 8 7 3.6993 2.4709 1.4435 9 6 4.5411 2.5488 2.6400 10 1 4.9137 1.5593 2.9048 11 6 3.7475 3.1528 3.8134 12 7 4.4302 4.4110 4.1940 13 6 4.3431 4.6401 5.6424 14 6 2.8949 4.7080 6.0540 15 8 2.0232 4.6869 5.2109 16 7 2.5685 4.7923 7.3588 17 6 1.2510 4.8535 7.7333 18 1 0.4748 4.8346 6.9826 19 6 0.9144 4.9398 9.0787 20 7 1.8589 4.9623 9.9921 21 14 -0.8806 5.0240 9.5888 22 1 -1.3994 3.6492 9.8029 23 1 -1.0012 5.8003 10.8490 24 1 -1.6682 5.6895 8.5202 25 6 5.8432 4.2524 3.7642 26 6 5.7200 3.5206 2.4042 27 1 5.4865 4.2236 1.6046 28 8 6.9178 2.7999 2.1075 29 6 7.8235 3.5037 1.2551 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.6142 3.4120 -0.0011 34 1 0.4429 2.4101 -0.8909 35 1 0.4422 2.4105 0.8891 36 1 3.6515 0.5576 -1.2491 37 1 2.3166 1.3283 -2.1392 38 1 3.4885 2.3299 -1.2490 39 1 3.6958 3.2007 0.8046 40 1 2.7249 3.3635 3.5007 41 1 3.7461 2.4610 4.6557 42 1 4.8327 3.8215 6.1699 43 1 4.8362 5.5796 5.8920 44 1 3.2656 4.8088 8.0332 45 1 1.6238 5.0222 10.9313 46 1 6.3968 3.6443 4.4796 47 1 6.3205 5.2240 3.6365 48 1 8.7069 2.8902 1.0781 49 1 7.3347 3.7201 0.3052 50 1 8.1200 4.4378 1.7322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213267086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:51 Heat of formation + Delta-G solvation = -110.117688 kcal Electronic energy + Delta-G solvation = -30654.408682 eV Core-core repulsion = 26488.556930 eV Total energy + Delta-G solvation = -4165.851752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67547 -40.62969 -39.66404 -37.78370 -37.28168 -36.00516 -35.51896 -33.32352 -32.27517 -31.20124 -29.30016 -28.40175 -28.30582 -27.12641 -25.99987 -24.93615 -22.90416 -22.39555 -21.64700 -20.94367 -19.89190 -19.68539 -18.22964 -18.16082 -17.70657 -17.30110 -16.85890 -16.59013 -16.44944 -16.00483 -15.93286 -15.87184 -15.60761 -15.26687 -15.09815 -14.84917 -14.71159 -14.39957 -13.98751 -13.53327 -13.43502 -13.36560 -13.30729 -13.12357 -13.09609 -13.01337 -12.94607 -12.72547 -12.53936 -12.43852 -12.41996 -12.16036 -12.13194 -11.82488 -11.67992 -11.50848 -10.95623 -10.71880 -10.34407 -10.33140 -10.14482 -10.03064 -9.47753 -8.48791 -5.97444 1.26118 1.35713 1.39314 1.52180 1.57475 2.01904 2.11109 2.25460 2.48289 2.96318 3.17539 3.25104 3.49665 3.54413 3.58961 3.75942 3.91047 3.98303 4.08643 4.12365 4.23325 4.29034 4.39624 4.43442 4.48174 4.52396 4.59950 4.65159 4.66565 4.71539 4.76293 4.81179 4.84332 4.86930 4.92444 4.95942 5.04502 5.22879 5.26959 5.38278 5.39322 5.65799 5.67300 5.76149 5.80049 6.01204 6.20838 6.46531 6.57653 7.10397 7.18706 7.53059 8.08709 8.68790 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.003227 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.578411 B = 8674.036508 C =11065.941642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.146 4.146 3 C -0.049 4.049 4 C -0.144 4.144 5 C -0.130 4.130 6 C 0.520 3.480 7 O -0.584 6.584 8 N -0.702 5.702 9 C 0.142 3.858 10 H 0.081 0.919 11 C 0.049 3.951 12 N -0.496 5.496 13 C 0.047 3.953 14 C 0.438 3.562 15 O -0.614 6.614 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.271 1.271 25 C 0.016 3.984 26 C 0.097 3.903 27 H 0.109 0.891 28 O -0.396 6.396 29 C 0.022 3.978 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.064 0.936 43 H 0.122 0.878 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.058 0.942 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.058 0.942 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.150 -2.171 -23.139 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.164 4.164 3 C -0.052 4.052 4 C -0.201 4.201 5 C -0.187 4.187 6 C 0.308 3.692 7 O -0.463 6.463 8 N -0.354 5.354 9 C 0.035 3.965 10 H 0.099 0.901 11 C -0.080 4.080 12 N -0.221 5.221 13 C -0.085 4.085 14 C 0.226 3.774 15 O -0.500 6.500 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.112 4.112 26 C 0.038 3.962 27 H 0.126 0.874 28 O -0.314 6.314 29 C -0.073 4.073 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.082 0.918 43 H 0.140 0.860 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.115 0.885 49 H 0.076 0.924 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.387 -2.539 -23.105 25.068 hybrid contribution -0.301 -0.425 1.492 1.580 sum 9.086 -2.964 -21.614 23.632 Atomic orbital electron populations 1.24171 0.95707 1.03202 0.99388 1.22575 0.96162 0.96722 1.00969 1.19929 0.95670 0.96215 0.93399 1.21989 0.98710 0.96224 1.03165 1.21817 0.98970 1.03190 0.94737 1.21193 0.79344 0.81145 0.87512 1.90686 1.66853 1.39956 1.48805 1.45837 1.44135 1.21090 1.24384 1.21676 0.89693 0.99933 0.85193 0.90104 1.23038 0.99321 0.89548 0.96119 1.64563 1.11309 1.33072 1.13166 1.22021 0.93173 1.03977 0.89303 1.20711 0.91738 0.82460 0.82528 1.90483 1.51981 1.56278 1.51257 1.41919 1.08055 1.64939 1.06174 1.19643 0.84406 1.49681 0.92487 0.90410 1.26037 1.04028 0.96278 0.94903 1.69672 1.34405 1.50206 1.01841 0.84946 0.77083 0.78534 0.77896 1.19904 1.19271 1.19618 1.23794 0.88943 1.02257 0.96215 1.23061 0.83917 0.91841 0.97416 0.87353 1.87937 1.29950 1.44054 1.69493 1.23073 0.93144 0.97843 0.93266 0.86992 0.87361 0.87852 0.90422 0.88610 0.93869 0.92504 0.89313 0.90080 0.74724 0.91251 0.96238 0.91764 0.86013 0.77040 0.91270 0.92381 0.86548 0.88518 0.92388 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.80 13.70 67.78 0.93 -2.87 16 2 C -0.15 -3.30 8.00 25.65 0.21 -3.09 16 3 C -0.05 -1.00 0.84 -53.68 -0.05 -1.04 16 4 C -0.14 -2.55 7.02 71.98 0.51 -2.05 16 5 C -0.13 -1.69 8.35 71.98 0.60 -1.09 16 6 C 0.52 14.87 6.47 87.66 0.57 15.44 16 7 O -0.58 -22.72 15.71 -3.03 -0.05 -22.76 16 8 N -0.70 -17.01 4.80 -438.37 -2.11 -19.11 16 9 C 0.14 4.02 3.08 45.87 0.14 4.16 16 10 H 0.08 2.70 7.53 -2.39 -0.02 2.68 16 11 C 0.05 1.80 5.19 86.40 0.45 2.24 16 12 N -0.50 -16.09 5.12 -886.97 -4.54 -20.63 16 13 C 0.05 1.66 5.30 85.56 0.45 2.12 16 14 C 0.44 21.49 7.39 87.66 0.65 22.14 16 15 O -0.61 -34.56 14.10 -3.07 -0.04 -34.60 16 16 N -0.57 -30.30 5.29 -306.99 -1.62 -31.92 16 17 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 18 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 19 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 20 N -0.92 -50.68 13.05 21.66 0.28 -50.39 16 21 Si 0.99 43.97 29.55 68.60 2.03 46.00 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.02 0.37 6.28 86.65 0.54 0.91 16 26 C 0.10 2.02 3.27 31.80 0.10 2.13 16 27 H 0.11 1.71 7.43 -2.39 -0.02 1.69 16 28 O -0.40 -8.06 10.44 -148.98 -1.56 -9.61 16 29 C 0.02 0.26 10.85 113.37 1.23 1.49 16 30 H 0.11 2.05 5.69 -2.91 -0.02 2.03 16 31 H 0.11 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.10 2.47 8.06 -2.91 -0.02 2.44 16 33 H 0.08 1.16 7.57 -2.39 -0.02 1.14 16 34 H 0.10 1.23 7.50 -2.38 -0.02 1.21 16 35 H 0.04 1.00 7.50 -2.39 -0.02 0.98 16 36 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.74 7.56 -2.39 -0.02 0.72 16 39 H 0.41 7.08 7.20 -92.71 -0.67 6.41 16 40 H 0.07 3.03 6.82 -2.39 -0.02 3.01 16 41 H 0.02 0.81 7.72 -2.39 -0.02 0.79 16 42 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 43 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 44 H 0.40 19.87 7.90 -92.70 -0.73 19.14 16 45 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 47 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.51 8.11 -2.39 -0.02 0.49 16 50 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -78.62 405.21 -0.44 -79.07 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.45 Total: 42.27 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 7.61 Total: 21.70 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -7.99 Total: -122.05 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.65 Total: -66.98 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -78.62 -0.44 -79.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213267086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.051 kcal (2) G-P(sol) polarization free energy of solvation -78.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds