Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.50694 * 115.55248 * 294.73480 * 3 2 1 5 5 O 1.21283 * 120.00070 * 99.19793 * 4 3 2 6 6 N 1.34782 * 119.99788 * 279.20310 * 4 3 2 7 7 C 1.46507 * 119.99710 * 175.26102 * 6 4 3 8 8 H 1.08993 * 110.27441 * 34.01843 * 7 6 4 9 9 C 1.53996 * 110.30411 * 271.92905 * 7 6 4 10 10 N 1.48124 * 106.94453 * 242.34083 * 9 7 6 11 11 C 1.46897 * 110.95243 * 214.10664 * 10 9 7 12 12 C 1.50700 * 109.47615 * 187.24314 * 11 10 9 13 13 O 1.21288 * 119.99648 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00159 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99609 * 179.97438 * 14 12 11 16 16 H 1.07990 * 120.00049 * 0.02562 * 15 14 12 17 17 C 1.38947 * 119.99468 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00311 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47215 * 59.99963 * 19 17 15 21 21 H 1.48495 * 109.47070 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46993 * 299.99926 * 19 17 15 23 23 C 1.48540 * 105.82254 * 334.59008 * 10 9 7 24 24 C 1.54592 * 110.30690 * 156.11114 * 7 6 4 25 25 H 1.09001 * 110.72634 * 22.51525 * 24 7 6 26 26 O 1.42900 * 110.72459 * 259.22763 * 24 7 6 27 27 C 1.42894 * 114.00281 * 150.00283 * 26 24 7 28 28 C 1.53000 * 117.51521 * 80.43523 * 3 2 1 29 29 C 1.53001 * 60.00046 * 107.48199 * 28 3 2 30 30 H 1.09003 * 109.46975 * 55.69048 * 1 2 3 31 31 H 1.08996 * 109.47351 * 175.68851 * 1 2 3 32 32 H 1.09002 * 109.46805 * 295.69248 * 1 2 3 33 33 H 1.08997 * 109.46991 * 240.00418 * 2 1 3 34 34 H 1.08994 * 109.47035 * 119.99901 * 2 1 3 35 35 H 0.96993 * 119.99976 * 354.97523 * 6 4 3 36 36 H 1.09000 * 109.91673 * 1.66301 * 9 7 6 37 37 H 1.08995 * 109.91517 * 122.95808 * 9 7 6 38 38 H 1.09000 * 109.47143 * 307.24402 * 11 10 9 39 39 H 1.08998 * 109.47408 * 67.23835 * 11 10 9 40 40 H 0.96990 * 119.99947 * 359.97438 * 14 12 11 41 41 H 0.97005 * 119.99725 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.66919 * 280.83264 * 23 10 9 43 43 H 1.08997 * 110.66500 * 157.70145 * 23 10 9 44 44 H 1.08996 * 109.47350 * 180.02562 * 27 26 24 45 45 H 1.09007 * 109.47039 * 300.00235 * 27 26 24 46 46 H 1.08998 * 109.47085 * 59.99669 * 27 26 24 47 47 H 1.09004 * 117.49810 * 214.96947 * 28 3 2 48 48 H 1.09002 * 117.50012 * 359.97438 * 28 3 2 49 49 H 1.09003 * 117.49221 * 252.51347 * 29 28 3 50 50 H 1.08995 * 117.52222 * 107.47834 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7204 2.2450 -1.2348 5 8 0.7829 3.0145 -1.2321 6 7 2.4762 2.1074 -2.3422 7 6 2.1048 2.8079 -3.5742 8 1 1.6525 3.7713 -3.3392 9 6 1.1329 1.9494 -4.4048 10 7 1.8086 1.6526 -5.6891 11 6 0.8392 1.5926 -6.7911 12 6 1.5302 1.1163 -8.0428 13 8 2.7140 0.8531 -8.0192 14 7 0.8329 0.9827 -9.1884 15 6 1.4618 0.5498 -10.3272 16 1 2.5157 0.3155 -10.3061 17 6 0.7427 0.4116 -11.5080 18 7 -0.5400 0.6963 -11.5335 19 14 1.5993 -0.1789 -13.0595 20 1 2.1696 -1.5301 -12.8265 21 1 0.6189 -0.2412 -14.1731 22 1 2.6904 0.7648 -13.4122 23 6 2.7839 2.7534 -5.8975 24 6 3.3457 3.0032 -4.4753 25 1 4.1178 2.2734 -4.2320 26 8 3.8513 4.3346 -4.3580 27 6 5.2620 4.4404 -4.5593 28 6 2.0631 2.1841 1.3381 29 6 3.3730 1.7205 0.6977 30 1 -0.3633 0.5793 -0.8489 31 1 -0.3634 -1.0247 -0.0773 32 1 -0.3633 0.4455 0.9261 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2683 1.5479 -2.3224 36 1 0.9132 1.0214 -3.8770 37 1 0.2118 2.5029 -4.5874 38 1 0.0378 0.9005 -6.5328 39 1 0.4214 2.5847 -6.9619 40 1 -0.1138 1.1928 -9.2071 41 1 -1.0418 0.6001 -12.3580 42 1 2.2831 3.6447 -6.2753 43 1 3.5780 2.4405 -6.5754 44 1 5.5671 5.4815 -4.4532 45 1 5.7814 3.8327 -3.8183 46 1 5.5138 4.0877 -5.5594 47 1 1.8470 3.2524 1.3252 48 1 1.7144 1.6445 2.2187 49 1 3.8864 0.8758 1.1571 50 1 4.0189 2.4835 0.2633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213386940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = -83.015075 kcal Electronic energy + Delta-G solvation = -30236.045637 eV Core-core repulsion = 26071.369142 eV Total energy + Delta-G solvation = -4164.676495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65270 -39.42513 -38.06390 -37.20632 -36.52972 -34.48762 -33.79673 -32.21617 -31.29610 -30.48110 -28.33741 -27.10689 -26.13229 -24.92562 -24.09412 -23.07453 -22.59160 -21.52677 -20.71791 -19.70029 -19.16430 -17.89144 -17.20747 -17.13300 -16.30629 -15.98935 -15.80741 -15.47809 -15.34311 -14.80853 -14.58121 -14.53950 -14.16568 -14.00645 -13.90527 -13.71567 -13.56796 -13.32911 -12.88507 -12.72222 -12.53706 -12.16438 -12.06489 -11.97263 -11.85505 -11.72769 -11.62845 -11.51121 -11.46798 -11.27590 -11.00030 -10.77669 -10.71389 -10.44474 -10.39036 -10.21638 -9.95252 -9.71704 -9.48575 -9.20680 -8.51869 -8.04292 -7.94846 -6.41338 -3.82337 2.41989 2.81599 3.19694 3.25561 3.29454 3.29770 3.48375 3.90543 4.07796 4.20835 4.29858 4.35670 4.45344 4.48194 4.66587 4.69987 4.91104 5.04348 5.07575 5.13780 5.14697 5.21837 5.23709 5.25928 5.30012 5.34353 5.37642 5.49037 5.57215 5.59570 5.67325 5.68711 5.73508 5.74075 5.80491 5.81089 5.84075 5.95345 6.05634 6.24911 6.26921 6.34706 6.88940 7.11695 7.14833 7.32418 7.54923 8.05145 8.05769 8.61785 9.17958 9.54518 10.06131 10.76353 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002384 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.853119 B =11741.443873 C =12788.528738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C -0.155 4.155 4 C 0.554 3.446 5 O -0.533 6.533 6 N -0.714 5.714 7 C 0.137 3.863 8 H 0.107 0.893 9 C 0.027 3.973 10 N -0.486 5.486 11 C 0.036 3.964 12 C 0.446 3.554 13 O -0.580 6.580 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.025 3.975 24 C 0.079 3.921 25 H 0.082 0.918 26 O -0.379 6.379 27 C 0.031 3.969 28 C -0.144 4.144 29 C -0.166 4.166 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.048 0.952 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 2.747 23.549 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.159 4.159 4 C 0.340 3.660 5 O -0.408 6.408 6 N -0.365 5.365 7 C 0.032 3.968 8 H 0.125 0.875 9 C -0.103 4.103 10 N -0.211 5.211 11 C -0.096 4.096 12 C 0.231 3.769 13 O -0.464 6.464 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.104 4.104 24 C 0.020 3.980 25 H 0.100 0.900 26 O -0.297 6.297 27 C -0.066 4.066 28 C -0.182 4.182 29 C -0.203 4.203 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.217 2.767 23.436 24.404 hybrid contribution -0.171 0.124 -1.049 1.070 sum 6.046 2.891 22.387 23.369 Atomic orbital electron populations 1.21734 0.94816 1.01719 1.02636 1.21003 0.96649 0.91037 1.02847 1.21508 1.03656 0.97739 0.92964 1.19506 0.82004 0.81397 0.83140 1.90709 1.29533 1.36967 1.83618 1.46001 1.29769 1.50230 1.10484 1.21850 0.94829 0.96671 0.83452 0.87534 1.23358 0.96057 0.99574 0.91276 1.64562 1.13864 1.42026 1.00667 1.22101 0.94826 1.00883 0.91783 1.19652 0.88005 0.85016 0.84226 1.90486 1.15645 1.55210 1.85030 1.41852 1.11658 1.58616 1.07958 1.19631 0.96085 1.40971 0.86160 0.87991 1.25261 0.95561 0.97631 0.99492 1.69606 1.06946 1.48813 1.28939 0.85923 0.78603 0.79385 0.80327 1.19900 1.20984 1.19936 1.23667 0.97714 0.92984 0.95991 1.23292 0.95248 0.84499 0.94964 0.89965 1.87903 1.22778 1.26879 1.92125 1.22818 0.81054 1.02440 1.00243 1.22968 0.99836 1.01099 0.94257 1.23147 0.90223 1.03797 1.03116 0.92284 0.92379 0.92486 0.90927 0.90882 0.76323 0.89614 0.92592 0.89089 0.92927 0.77472 0.91812 0.92892 0.87563 0.89639 0.94098 0.93365 0.88156 0.87871 0.87773 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.84 37.16 0.37 -0.93 16 2 C -0.08 -0.58 5.81 -26.73 -0.16 -0.74 16 3 C -0.16 -1.33 1.87 -155.66 -0.29 -1.62 16 4 C 0.55 6.45 6.29 -10.99 -0.07 6.38 16 5 O -0.53 -8.24 16.65 5.55 0.09 -8.15 16 6 N -0.71 -7.55 5.01 -52.49 -0.26 -7.81 16 7 C 0.14 1.74 3.12 -66.57 -0.21 1.53 16 8 H 0.11 1.54 7.46 -51.93 -0.39 1.15 16 9 C 0.03 0.37 6.49 -2.63 -0.02 0.35 16 10 N -0.49 -8.03 4.96 -231.70 -1.15 -9.18 16 11 C 0.04 0.65 5.18 -4.98 -0.03 0.62 16 12 C 0.45 10.46 7.59 -10.98 -0.08 10.37 16 13 O -0.58 -15.33 14.42 5.55 0.08 -15.25 16 14 N -0.56 -14.29 5.29 -10.97 -0.06 -14.35 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 19 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C 0.02 0.40 5.59 -1.89 -0.01 0.39 16 24 C 0.08 1.01 3.26 -24.87 -0.08 0.93 16 25 H 0.08 0.95 7.43 -51.93 -0.39 0.56 16 26 O -0.38 -4.89 10.44 -35.23 -0.37 -5.26 16 27 C 0.03 0.30 10.85 101.05 1.10 1.40 16 28 C -0.14 -1.10 9.88 -26.73 -0.26 -1.36 16 29 C -0.17 -1.07 9.92 -26.73 -0.27 -1.33 16 30 H 0.06 0.63 7.58 -51.93 -0.39 0.24 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.40 3.40 8.37 -40.82 -0.34 3.06 16 36 H 0.09 1.16 7.92 -51.93 -0.41 0.74 16 37 H 0.06 0.77 7.78 -51.93 -0.40 0.36 16 38 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 39 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 40 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 43 H 0.11 1.95 6.91 -51.93 -0.36 1.59 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.33 8.12 -51.92 -0.42 -0.09 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 411.73 15.07 6.20 6.20 Total: -1.00 -32.96 411.73 -8.41 -41.38 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -8.40 Total: 12.24 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -0.25 Total: 8.05 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.75 Total: -55.21 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.20 Total: -28.66 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.96 -8.41 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213386940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.639 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds