Wall clock time and date at job start Sat Apr 11 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.50694 * 115.55248 * 294.73480 * 3 2 1 5 5 O 1.21283 * 120.00070 * 99.19793 * 4 3 2 6 6 N 1.34782 * 119.99788 * 279.20310 * 4 3 2 7 7 C 1.46507 * 119.99710 * 175.26102 * 6 4 3 8 8 H 1.08993 * 110.27441 * 34.01843 * 7 6 4 9 9 C 1.53996 * 110.30411 * 271.92905 * 7 6 4 10 10 N 1.48124 * 106.94453 * 242.34083 * 9 7 6 11 11 C 1.46897 * 110.95243 * 214.10664 * 10 9 7 12 12 C 1.50700 * 109.47615 * 187.24314 * 11 10 9 13 13 O 1.21288 * 119.99648 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00159 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99609 * 179.97438 * 14 12 11 16 16 H 1.07990 * 120.00049 * 0.02562 * 15 14 12 17 17 C 1.38947 * 119.99468 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00311 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47215 * 59.99963 * 19 17 15 21 21 H 1.48495 * 109.47070 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46993 * 299.99926 * 19 17 15 23 23 C 1.48540 * 105.82254 * 334.59008 * 10 9 7 24 24 C 1.54592 * 110.30690 * 156.11114 * 7 6 4 25 25 H 1.09001 * 110.72634 * 22.51525 * 24 7 6 26 26 O 1.42900 * 110.72459 * 259.22763 * 24 7 6 27 27 C 1.42894 * 114.00281 * 150.00283 * 26 24 7 28 28 C 1.53000 * 117.51521 * 80.43523 * 3 2 1 29 29 C 1.53001 * 60.00046 * 107.48199 * 28 3 2 30 30 H 1.09003 * 109.46975 * 55.69048 * 1 2 3 31 31 H 1.08996 * 109.47351 * 175.68851 * 1 2 3 32 32 H 1.09002 * 109.46805 * 295.69248 * 1 2 3 33 33 H 1.08997 * 109.46991 * 240.00418 * 2 1 3 34 34 H 1.08994 * 109.47035 * 119.99901 * 2 1 3 35 35 H 0.96993 * 119.99976 * 354.97523 * 6 4 3 36 36 H 1.09000 * 109.91673 * 1.66301 * 9 7 6 37 37 H 1.08995 * 109.91517 * 122.95808 * 9 7 6 38 38 H 1.09000 * 109.47143 * 307.24402 * 11 10 9 39 39 H 1.08998 * 109.47408 * 67.23835 * 11 10 9 40 40 H 0.96990 * 119.99947 * 359.97438 * 14 12 11 41 41 H 0.97005 * 119.99725 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.66919 * 280.83264 * 23 10 9 43 43 H 1.08997 * 110.66500 * 157.70145 * 23 10 9 44 44 H 1.08996 * 109.47350 * 180.02562 * 27 26 24 45 45 H 1.09007 * 109.47039 * 300.00235 * 27 26 24 46 46 H 1.08998 * 109.47085 * 59.99669 * 27 26 24 47 47 H 1.09004 * 117.49810 * 214.96947 * 28 3 2 48 48 H 1.09002 * 117.50012 * 359.97438 * 28 3 2 49 49 H 1.09003 * 117.49221 * 252.51347 * 29 28 3 50 50 H 1.08995 * 117.52222 * 107.47834 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7204 2.2450 -1.2348 5 8 0.7829 3.0145 -1.2321 6 7 2.4762 2.1074 -2.3422 7 6 2.1048 2.8079 -3.5742 8 1 1.6525 3.7713 -3.3392 9 6 1.1329 1.9494 -4.4048 10 7 1.8086 1.6526 -5.6891 11 6 0.8392 1.5926 -6.7911 12 6 1.5302 1.1163 -8.0428 13 8 2.7140 0.8531 -8.0192 14 7 0.8329 0.9827 -9.1884 15 6 1.4618 0.5498 -10.3272 16 1 2.5157 0.3155 -10.3061 17 6 0.7427 0.4116 -11.5080 18 7 -0.5400 0.6963 -11.5335 19 14 1.5993 -0.1789 -13.0595 20 1 2.1696 -1.5301 -12.8265 21 1 0.6189 -0.2412 -14.1731 22 1 2.6904 0.7648 -13.4122 23 6 2.7839 2.7534 -5.8975 24 6 3.3457 3.0032 -4.4753 25 1 4.1178 2.2734 -4.2320 26 8 3.8513 4.3346 -4.3580 27 6 5.2620 4.4404 -4.5593 28 6 2.0631 2.1841 1.3381 29 6 3.3730 1.7205 0.6977 30 1 -0.3633 0.5793 -0.8489 31 1 -0.3634 -1.0247 -0.0773 32 1 -0.3633 0.4455 0.9261 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2683 1.5479 -2.3224 36 1 0.9132 1.0214 -3.8770 37 1 0.2118 2.5029 -4.5874 38 1 0.0378 0.9005 -6.5328 39 1 0.4214 2.5847 -6.9619 40 1 -0.1138 1.1928 -9.2071 41 1 -1.0418 0.6001 -12.3580 42 1 2.2831 3.6447 -6.2753 43 1 3.5780 2.4405 -6.5754 44 1 5.5671 5.4815 -4.4532 45 1 5.7814 3.8327 -3.8183 46 1 5.5138 4.0877 -5.5594 47 1 1.8470 3.2524 1.3252 48 1 1.7144 1.6445 2.2187 49 1 3.8864 0.8758 1.1571 50 1 4.0189 2.4835 0.2633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213386940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:54 Heat of formation + Delta-G solvation = -108.221833 kcal Electronic energy + Delta-G solvation = -30237.138684 eV Core-core repulsion = 26071.369142 eV Total energy + Delta-G solvation = -4165.769542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61639 -40.61699 -39.68123 -38.01775 -37.67745 -36.00012 -35.39945 -33.29589 -32.81056 -31.75281 -29.48616 -28.43619 -27.25716 -26.21222 -25.30227 -23.83756 -23.21118 -22.73556 -21.79386 -21.09478 -20.47449 -19.87895 -18.26015 -18.03198 -17.68620 -17.29102 -16.65403 -16.58946 -16.50492 -16.29410 -15.91917 -15.77511 -15.53206 -15.08920 -15.06684 -14.82487 -14.62307 -14.38455 -14.16475 -13.90891 -13.65066 -13.39870 -13.37244 -13.20210 -12.95693 -12.86805 -12.64944 -12.61480 -12.43475 -12.42010 -12.39924 -12.13159 -12.09832 -11.86966 -11.47693 -11.36066 -11.02665 -10.82576 -10.67280 -10.38731 -10.15267 -10.01395 -9.47390 -8.46211 -5.95124 1.39728 1.41474 1.52289 1.53099 1.94306 2.04221 2.25993 2.43937 2.71062 2.92202 3.19460 3.29180 3.49736 3.50529 3.62916 3.76686 3.85849 3.91552 4.02899 4.12514 4.20975 4.27351 4.33377 4.43196 4.44952 4.48155 4.52600 4.56197 4.58564 4.63964 4.69905 4.73798 4.76064 4.82910 4.92872 4.99099 5.04536 5.08888 5.19892 5.22226 5.35644 5.39714 5.40658 5.66142 5.73550 6.02797 6.13399 6.47193 6.59798 7.12356 7.17654 7.55556 8.10586 8.71094 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002384 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.853119 B =11741.443873 C =12788.528738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 C -0.168 4.168 4 C 0.552 3.448 5 O -0.577 6.577 6 N -0.702 5.702 7 C 0.147 3.853 8 H 0.090 0.910 9 C 0.032 3.968 10 N -0.496 5.496 11 C 0.046 3.954 12 C 0.445 3.555 13 O -0.612 6.612 14 N -0.575 5.575 15 C -0.331 4.331 16 H 0.081 0.919 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.271 1.271 23 C 0.025 3.975 24 C 0.094 3.906 25 H 0.099 0.901 26 O -0.395 6.395 27 C 0.024 3.976 28 C -0.150 4.150 29 C -0.143 4.143 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.415 0.585 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.082 0.918 48 H 0.121 0.879 49 H 0.130 0.870 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 1.928 25.047 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.171 4.171 4 C 0.339 3.661 5 O -0.456 6.456 6 N -0.354 5.354 7 C 0.040 3.960 8 H 0.108 0.892 9 C -0.097 4.097 10 N -0.222 5.222 11 C -0.086 4.086 12 C 0.232 3.768 13 O -0.498 6.498 14 N -0.212 5.212 15 C -0.461 4.461 16 H 0.099 0.901 17 C -0.214 4.214 18 N -0.563 5.563 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.104 4.104 24 C 0.034 3.966 25 H 0.117 0.883 26 O -0.313 6.313 27 C -0.072 4.072 28 C -0.188 4.188 29 C -0.180 4.180 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.120 0.880 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.101 0.899 48 H 0.139 0.861 49 H 0.148 0.852 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.237 1.942 24.953 26.054 hybrid contribution -0.465 0.427 -1.467 1.597 sum 6.773 2.369 23.486 24.558 Atomic orbital electron populations 1.21734 0.96030 1.01776 1.01389 1.21029 0.95525 0.90398 1.04141 1.21484 1.06039 0.97896 0.91698 1.20111 0.81110 0.80846 0.83991 1.90687 1.31447 1.39017 1.84427 1.45890 1.30078 1.49866 1.09589 1.21574 0.94411 0.95899 0.84090 0.89205 1.23349 0.96225 1.00101 0.89980 1.64502 1.13964 1.42626 1.01098 1.21984 0.94927 1.01909 0.89763 1.20557 0.87709 0.83331 0.85178 1.90460 1.17291 1.56206 1.85800 1.41927 1.11836 1.59276 1.08184 1.19624 0.95619 1.42984 0.87838 0.90103 1.26060 0.96225 0.97175 1.01953 1.69676 1.07821 1.48879 1.29922 0.84984 0.77799 0.78801 0.76735 1.19592 1.19633 1.19644 1.23562 0.96916 0.92281 0.97614 1.23105 0.95565 0.85182 0.92710 0.88311 1.87890 1.24701 1.26709 1.91998 1.23037 0.79577 1.04020 1.00571 1.23044 1.01074 1.00280 0.94375 1.23262 0.89266 1.04219 1.01229 0.95135 0.91365 0.92401 0.90791 0.88335 0.74786 0.89000 0.92414 0.87081 0.91376 0.77120 0.91334 0.93764 0.90340 0.88002 0.92032 0.94000 0.89941 0.86079 0.85204 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.84 71.98 0.71 -1.72 16 2 C -0.07 -0.92 5.81 30.60 0.18 -0.74 16 3 C -0.17 -2.55 1.87 -52.93 -0.10 -2.65 16 4 C 0.55 12.44 6.29 87.65 0.55 12.99 16 5 O -0.58 -18.09 16.65 -3.04 -0.05 -18.14 16 6 N -0.70 -14.01 5.01 -438.37 -2.20 -16.21 16 7 C 0.15 3.63 3.12 45.87 0.14 3.78 16 8 H 0.09 2.60 7.46 -2.39 -0.02 2.59 16 9 C 0.03 0.87 6.49 86.40 0.56 1.43 16 10 N -0.50 -16.29 4.96 -886.95 -4.40 -20.70 16 11 C 0.05 1.64 5.18 85.56 0.44 2.08 16 12 C 0.45 21.28 7.59 87.66 0.66 21.94 16 13 O -0.61 -33.23 14.42 -3.05 -0.04 -33.28 16 14 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 15 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 16 H 0.08 4.85 7.16 -2.92 -0.02 4.83 16 17 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 18 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 19 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.03 0.81 5.59 86.65 0.48 1.29 16 24 C 0.09 2.34 3.26 31.80 0.10 2.44 16 25 H 0.10 2.12 7.43 -2.39 -0.02 2.11 16 26 O -0.39 -9.88 10.44 -148.98 -1.56 -11.44 16 27 C 0.02 0.43 10.85 113.37 1.23 1.66 16 28 C -0.15 -2.00 9.88 30.59 0.30 -1.70 16 29 C -0.14 -1.40 9.92 30.60 0.30 -1.09 16 30 H 0.03 0.65 7.58 -2.39 -0.02 0.63 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.77 8.09 -2.39 -0.02 0.75 16 35 H 0.41 6.14 8.37 -92.71 -0.78 5.37 16 36 H 0.09 2.38 7.92 -2.39 -0.02 2.36 16 37 H 0.06 1.55 7.78 -2.39 -0.02 1.53 16 38 H 0.11 3.55 8.11 -2.39 -0.02 3.53 16 39 H 0.07 2.25 7.90 -2.39 -0.02 2.23 16 40 H 0.40 19.58 7.90 -92.72 -0.73 18.85 16 41 H 0.28 14.18 8.31 -92.70 -0.77 13.41 16 42 H 0.04 1.48 7.85 -2.39 -0.02 1.46 16 43 H 0.08 2.98 6.91 -2.39 -0.02 2.97 16 44 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 0.87 8.12 -2.38 -0.02 0.85 16 46 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.96 411.73 -1.26 -74.22 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.56 Total: 40.45 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 6.85 Total: 21.41 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -7.94 Total: -118.21 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -1.65 Total: -62.86 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -72.96 -1.26 -74.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213386940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.003 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds