Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50701 * 119.99940 * 2 1 4 4 C 1.31000 * 120.00272 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99801 * 183.75783 * 4 2 1 6 6 C 1.50698 * 119.99877 * 3.75484 * 4 2 1 7 7 C 1.50694 * 109.47374 * 94.99916 * 6 4 2 8 8 O 1.21282 * 119.99816 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00509 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00417 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.28445 * 35.67386 * 10 9 7 12 12 C 1.54371 * 110.32253 * 273.54541 * 10 9 7 13 13 N 1.48561 * 104.59490 * 217.24717 * 12 10 9 14 14 C 1.46906 * 111.00111 * 159.03857 * 13 12 10 15 15 C 1.50699 * 109.47173 * 170.00312 * 14 13 12 16 16 O 1.21297 * 119.99873 * 359.72559 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00434 * 179.72834 * 17 15 14 19 19 H 1.08011 * 119.99658 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00289 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00062 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99937 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46936 * 90.00448 * 22 20 18 24 24 H 1.48497 * 109.47293 * 210.00224 * 22 20 18 25 25 H 1.48504 * 109.47283 * 330.00433 * 22 20 18 26 26 C 1.48565 * 104.22185 * 39.48776 * 13 12 10 27 27 C 1.54261 * 110.32525 * 157.90743 * 10 9 7 28 28 H 1.09004 * 110.32661 * 237.79406 * 27 10 9 29 29 O 1.42905 * 110.32371 * 359.89942 * 27 10 9 30 30 H 1.08995 * 109.47431 * 270.00366 * 1 2 3 31 31 H 1.08998 * 109.47194 * 30.00578 * 1 2 3 32 32 H 1.09000 * 109.46607 * 150.00549 * 1 2 3 33 33 H 1.08995 * 109.47395 * 185.43285 * 3 2 1 34 34 H 1.09002 * 109.46804 * 305.43145 * 3 2 1 35 35 H 1.09005 * 109.47180 * 65.42885 * 3 2 1 36 36 H 1.09004 * 109.46509 * 174.94805 * 5 4 2 37 37 H 1.08996 * 109.46656 * 294.93853 * 5 4 2 38 38 H 1.08993 * 109.47674 * 54.94782 * 5 4 2 39 39 H 1.09004 * 109.46931 * 334.99699 * 6 4 2 40 40 H 1.09004 * 109.47426 * 215.00223 * 6 4 2 41 41 H 0.97010 * 119.99591 * 359.97438 * 9 7 6 42 42 H 1.09000 * 110.41477 * 98.47609 * 12 10 9 43 43 H 1.08996 * 110.41435 * 336.02660 * 12 10 9 44 44 H 1.08996 * 109.46693 * 50.00539 * 14 13 12 45 45 H 1.08994 * 109.47065 * 290.00418 * 14 13 12 46 46 H 0.97002 * 119.99635 * 359.71763 * 17 15 14 47 47 H 0.97002 * 119.99906 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.41250 * 79.29133 * 26 13 12 49 49 H 1.08995 * 110.40987 * 201.73903 * 26 13 12 50 50 H 0.96703 * 113.99775 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 3.6667 -1.1357 0.0860 6 6 1.4110 -2.4382 -0.0844 7 6 1.3480 -2.8891 -1.5209 8 8 1.8628 -2.2180 -2.3902 9 7 0.7197 -4.0379 -1.8398 10 6 0.6590 -4.4765 -3.2362 11 1 1.5813 -4.2149 -3.7549 12 6 -0.5548 -3.8393 -3.9460 13 7 -1.0593 -4.9029 -4.8523 14 6 -2.4599 -4.6588 -5.2220 15 6 -2.8614 -5.6065 -6.3228 16 8 -2.0581 -6.4032 -6.7601 17 7 -4.1111 -5.5647 -6.8256 18 6 -4.4747 -6.4231 -7.8308 19 1 -3.7594 -7.1326 -8.2202 20 6 -5.7633 -6.3804 -8.3488 21 7 -6.1117 -7.2028 -9.3127 22 14 -7.0006 -5.1538 -7.6749 23 1 -6.9149 -3.8888 -8.4480 24 1 -8.3700 -5.7154 -7.7950 25 1 -6.7005 -4.8821 -6.2461 26 6 -0.9283 -6.1516 -4.0581 27 6 0.4133 -5.9977 -3.3099 28 1 1.2148 -6.4842 -3.8659 29 8 0.3168 -6.5491 -1.9951 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3632 -0.8901 -0.5138 33 1 3.3281 1.1083 -0.0973 34 1 1.9262 1.9176 -0.8374 35 1 2.0721 1.8335 0.9346 36 1 4.0252 -2.1621 0.1639 37 1 4.0818 -0.6728 -0.8092 38 1 3.9811 -0.5734 0.9651 39 1 0.3996 -2.3004 0.2979 40 1 1.9248 -3.1929 0.5111 41 1 0.3083 -4.5749 -1.1444 42 1 -0.2443 -2.9665 -4.5203 43 1 -1.3193 -3.5650 -3.2192 44 1 -2.5703 -3.6314 -5.5689 45 1 -3.0983 -4.8196 -4.3534 46 1 -4.7535 -4.9274 -6.4761 47 1 -7.0114 -7.1733 -9.6741 48 1 -1.7513 -6.2390 -3.3487 49 1 -0.8989 -7.0196 -4.7166 50 1 0.1627 -7.5037 -1.9793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220158132.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -93.424363 kcal Electronic energy + Delta-G solvation = -29781.785352 eV Core-core repulsion = 25616.657476 eV Total energy + Delta-G solvation = -4165.127875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45216 -39.25682 -38.11833 -37.21534 -35.91560 -34.34602 -33.86448 -31.72374 -31.51268 -30.51972 -29.69292 -28.12948 -27.03335 -26.27886 -24.28253 -23.91157 -21.59821 -21.14068 -20.50076 -19.37480 -18.34964 -17.82147 -17.44020 -16.95850 -16.17654 -16.08184 -15.91675 -15.36338 -15.06094 -14.97773 -14.71746 -14.60760 -14.30951 -14.06508 -13.76577 -13.64562 -13.15741 -13.10832 -12.99872 -12.92420 -12.60580 -12.49884 -12.45115 -12.27614 -12.15344 -12.01626 -11.89744 -11.57487 -11.53689 -11.45032 -11.20500 -11.01510 -10.92442 -10.61347 -10.18673 -10.02659 -9.99142 -9.57446 -9.18885 -8.71908 -8.69349 -8.21389 -8.16715 -6.32420 -3.83847 1.81312 2.52614 2.97737 3.00748 3.05820 3.13837 3.71289 3.83235 4.07886 4.11084 4.38460 4.46639 4.48105 4.60707 4.78495 4.84176 4.91446 5.00373 5.01670 5.13312 5.17461 5.19759 5.23334 5.27970 5.36393 5.42426 5.45624 5.50901 5.55036 5.58367 5.62381 5.69227 5.71499 5.73535 5.81149 5.86518 5.86940 5.92267 6.09535 6.28169 6.39125 6.73962 6.85406 6.95080 7.34268 7.45134 7.56608 8.12517 8.14859 8.58728 8.93771 9.40923 9.81741 10.80665 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.002203 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.756371 B =12709.375304 C =13802.610013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.106 4.106 7 C 0.513 3.487 8 O -0.533 6.533 9 N -0.713 5.713 10 C 0.153 3.847 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.477 5.477 14 C 0.033 3.967 15 C 0.454 3.546 16 O -0.559 6.559 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.005 3.995 27 C 0.095 3.905 28 H 0.080 0.920 29 O -0.568 6.568 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.409 0.591 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.051 0.949 49 H 0.103 0.897 50 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.297 11.217 24.119 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.127 4.127 3 C -0.174 4.174 4 C -0.116 4.116 5 C -0.165 4.165 6 C -0.146 4.146 7 C 0.300 3.700 8 O -0.409 6.409 9 N -0.367 5.367 10 C 0.047 3.953 11 H 0.122 0.878 12 C -0.109 4.109 13 N -0.202 5.202 14 C -0.099 4.099 15 C 0.240 3.760 16 O -0.440 6.440 17 N -0.232 5.232 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.123 4.123 27 C 0.035 3.965 28 H 0.098 0.902 29 O -0.374 6.374 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.246 0.754 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.121 0.879 50 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 14.451 11.655 22.693 29.319 hybrid contribution -2.174 0.069 1.179 2.474 sum 12.277 11.724 23.871 29.292 Atomic orbital electron populations 1.20851 0.92547 1.02578 1.01675 1.21354 0.95497 0.94747 1.01103 1.20854 1.00078 0.94818 1.01697 1.20784 0.95467 0.92675 1.02702 1.20732 0.92130 1.02039 1.01643 1.20766 1.02539 0.97049 0.94254 1.20617 0.77810 0.80608 0.91011 1.90717 1.45636 1.54144 1.50374 1.45834 1.57670 1.23970 1.09266 1.21694 0.99738 0.91355 0.82526 0.87757 1.23610 0.95980 0.96224 0.95040 1.65084 1.18499 1.01357 1.35261 1.22103 0.88948 1.00700 0.98143 1.19563 0.82977 0.87307 0.86195 1.90549 1.50595 1.40659 1.62204 1.42204 1.10912 1.34920 1.35119 1.19416 0.98341 1.14624 1.10867 0.86269 1.25038 0.97169 0.97498 0.96508 1.69622 1.20154 1.36671 1.25688 0.86673 0.81851 0.81771 0.79082 1.19578 1.20188 1.19594 1.23927 0.96091 0.96071 0.96253 1.22837 0.97315 0.93184 0.83210 0.90229 1.86229 1.95570 1.28023 1.27566 0.91545 0.91875 0.91962 0.91521 0.91632 0.91925 0.92465 0.91310 0.91873 0.88217 0.88465 0.75433 0.89111 0.93401 0.88967 0.92955 0.79755 0.91617 0.93095 0.87877 0.76430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.24 36.01 0.33 -0.61 16 2 C -0.13 -1.12 6.05 -101.06 -0.61 -1.73 16 3 C -0.12 -0.88 9.86 36.01 0.36 -0.52 16 4 C -0.12 -1.05 4.54 -101.07 -0.46 -1.51 16 5 C -0.11 -0.88 8.55 36.01 0.31 -0.57 16 6 C -0.11 -0.86 5.15 -29.04 -0.15 -1.01 16 7 C 0.51 5.74 7.74 -10.99 -0.09 5.65 16 8 O -0.53 -8.00 15.73 5.56 0.09 -7.91 16 9 N -0.71 -7.27 4.90 -52.47 -0.26 -7.53 16 10 C 0.15 1.83 3.36 -66.55 -0.22 1.60 16 11 H 0.10 1.39 7.64 -51.93 -0.40 0.99 16 12 C 0.02 0.27 6.17 -2.19 -0.01 0.26 16 13 N -0.48 -7.57 4.98 -231.41 -1.15 -8.72 16 14 C 0.03 0.55 5.32 -4.97 -0.03 0.53 16 15 C 0.45 10.24 7.63 -10.99 -0.08 10.16 16 16 O -0.56 -14.75 14.81 5.54 0.08 -14.66 16 17 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 18 C -0.30 -8.55 10.16 -14.94 -0.15 -8.70 16 19 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 22 Si 0.88 19.32 27.73 -169.99 -4.71 14.60 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 26 C 0.01 0.07 5.67 -2.18 -0.01 0.06 16 27 C 0.09 1.04 4.42 -25.35 -0.11 0.93 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 O -0.57 -4.91 11.50 -35.23 -0.41 -5.31 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.06 0.52 6.20 -51.93 -0.32 0.20 16 33 H 0.07 0.47 5.85 -51.93 -0.30 0.17 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.44 7.98 -51.93 -0.41 0.02 16 37 H 0.07 0.62 7.74 -51.93 -0.40 0.22 16 38 H 0.06 0.41 7.76 -51.93 -0.40 0.01 16 39 H 0.10 0.66 6.09 -51.93 -0.32 0.34 16 40 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 41 H 0.41 3.55 7.17 -40.82 -0.29 3.26 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 44 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 45 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 46 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.05 0.68 7.69 -51.93 -0.40 0.28 16 49 H 0.10 1.69 7.24 -51.93 -0.38 1.31 16 50 H 0.39 2.03 9.12 45.56 0.42 2.45 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -34.99 401.44 -7.81 -42.80 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -7.19 Total: 14.11 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.03 Total: 5.56 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.69 Total: -55.23 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.24 Total: -27.89 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.99 -7.81 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220158132.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.627 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds