Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50701 * 119.99940 * 2 1 4 4 C 1.31000 * 120.00272 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99801 * 183.75783 * 4 2 1 6 6 C 1.50698 * 119.99877 * 3.75484 * 4 2 1 7 7 C 1.50694 * 109.47374 * 94.99916 * 6 4 2 8 8 O 1.21282 * 119.99816 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00509 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00417 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.28445 * 35.67386 * 10 9 7 12 12 C 1.54371 * 110.32253 * 273.54541 * 10 9 7 13 13 N 1.48561 * 104.59490 * 217.24717 * 12 10 9 14 14 C 1.46906 * 111.00111 * 159.03857 * 13 12 10 15 15 C 1.50699 * 109.47173 * 170.00312 * 14 13 12 16 16 O 1.21297 * 119.99873 * 359.72559 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00434 * 179.72834 * 17 15 14 19 19 H 1.08011 * 119.99658 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00289 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00062 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99937 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46936 * 90.00448 * 22 20 18 24 24 H 1.48497 * 109.47293 * 210.00224 * 22 20 18 25 25 H 1.48504 * 109.47283 * 330.00433 * 22 20 18 26 26 C 1.48565 * 104.22185 * 39.48776 * 13 12 10 27 27 C 1.54261 * 110.32525 * 157.90743 * 10 9 7 28 28 H 1.09004 * 110.32661 * 237.79406 * 27 10 9 29 29 O 1.42905 * 110.32371 * 359.89942 * 27 10 9 30 30 H 1.08995 * 109.47431 * 270.00366 * 1 2 3 31 31 H 1.08998 * 109.47194 * 30.00578 * 1 2 3 32 32 H 1.09000 * 109.46607 * 150.00549 * 1 2 3 33 33 H 1.08995 * 109.47395 * 185.43285 * 3 2 1 34 34 H 1.09002 * 109.46804 * 305.43145 * 3 2 1 35 35 H 1.09005 * 109.47180 * 65.42885 * 3 2 1 36 36 H 1.09004 * 109.46509 * 174.94805 * 5 4 2 37 37 H 1.08996 * 109.46656 * 294.93853 * 5 4 2 38 38 H 1.08993 * 109.47674 * 54.94782 * 5 4 2 39 39 H 1.09004 * 109.46931 * 334.99699 * 6 4 2 40 40 H 1.09004 * 109.47426 * 215.00223 * 6 4 2 41 41 H 0.97010 * 119.99591 * 359.97438 * 9 7 6 42 42 H 1.09000 * 110.41477 * 98.47609 * 12 10 9 43 43 H 1.08996 * 110.41435 * 336.02660 * 12 10 9 44 44 H 1.08996 * 109.46693 * 50.00539 * 14 13 12 45 45 H 1.08994 * 109.47065 * 290.00418 * 14 13 12 46 46 H 0.97002 * 119.99635 * 359.71763 * 17 15 14 47 47 H 0.97002 * 119.99906 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.41250 * 79.29133 * 26 13 12 49 49 H 1.08995 * 110.40987 * 201.73903 * 26 13 12 50 50 H 0.96703 * 113.99775 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 3.6667 -1.1357 0.0860 6 6 1.4110 -2.4382 -0.0844 7 6 1.3480 -2.8891 -1.5209 8 8 1.8628 -2.2180 -2.3902 9 7 0.7197 -4.0379 -1.8398 10 6 0.6590 -4.4765 -3.2362 11 1 1.5813 -4.2149 -3.7549 12 6 -0.5548 -3.8393 -3.9460 13 7 -1.0593 -4.9029 -4.8523 14 6 -2.4599 -4.6588 -5.2220 15 6 -2.8614 -5.6065 -6.3228 16 8 -2.0581 -6.4032 -6.7601 17 7 -4.1111 -5.5647 -6.8256 18 6 -4.4747 -6.4231 -7.8308 19 1 -3.7594 -7.1326 -8.2202 20 6 -5.7633 -6.3804 -8.3488 21 7 -6.1117 -7.2028 -9.3127 22 14 -7.0006 -5.1538 -7.6749 23 1 -6.9149 -3.8888 -8.4480 24 1 -8.3700 -5.7154 -7.7950 25 1 -6.7005 -4.8821 -6.2461 26 6 -0.9283 -6.1516 -4.0581 27 6 0.4133 -5.9977 -3.3099 28 1 1.2148 -6.4842 -3.8659 29 8 0.3168 -6.5491 -1.9951 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3632 -0.8901 -0.5138 33 1 3.3281 1.1083 -0.0973 34 1 1.9262 1.9176 -0.8374 35 1 2.0721 1.8335 0.9346 36 1 4.0252 -2.1621 0.1639 37 1 4.0818 -0.6728 -0.8092 38 1 3.9811 -0.5734 0.9651 39 1 0.3996 -2.3004 0.2979 40 1 1.9248 -3.1929 0.5111 41 1 0.3083 -4.5749 -1.1444 42 1 -0.2443 -2.9665 -4.5203 43 1 -1.3193 -3.5650 -3.2192 44 1 -2.5703 -3.6314 -5.5689 45 1 -3.0983 -4.8196 -4.3534 46 1 -4.7535 -4.9274 -6.4761 47 1 -7.0114 -7.1733 -9.6741 48 1 -1.7513 -6.2390 -3.3487 49 1 -0.8989 -7.0196 -4.7166 50 1 0.1627 -7.5037 -1.9793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220158132.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -123.036339 kcal Electronic energy + Delta-G solvation = -29783.069424 eV Core-core repulsion = 25616.657476 eV Total energy + Delta-G solvation = -4166.411947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41418 -40.48422 -39.56223 -37.93268 -36.90772 -35.95683 -35.20152 -33.76149 -32.30226 -31.43643 -30.44328 -29.11646 -28.24980 -27.21758 -25.82249 -24.70645 -22.77436 -22.03119 -21.43548 -21.24654 -20.22717 -18.67044 -18.26915 -17.80392 -17.65469 -16.98991 -16.77145 -16.72751 -16.40337 -16.31448 -15.70733 -15.33216 -15.31174 -15.19758 -14.97126 -14.81923 -14.53451 -14.38898 -14.19602 -14.02559 -13.64801 -13.58306 -13.26878 -13.14495 -13.06597 -13.02971 -12.80951 -12.61546 -12.55383 -12.51079 -12.41302 -12.16818 -12.03319 -11.98474 -11.55415 -11.50533 -11.06275 -10.93983 -10.47255 -10.25033 -10.09397 -9.48991 -9.32405 -8.41671 -6.02406 1.16566 1.29090 1.35018 1.43466 1.68655 1.93922 2.12031 2.22301 2.67449 3.07329 3.13541 3.25286 3.46647 3.69074 3.76771 4.00145 4.03978 4.10205 4.12530 4.18894 4.24589 4.27742 4.39867 4.43646 4.45133 4.57600 4.61000 4.66518 4.75241 4.83589 4.85531 4.87353 4.88173 4.95847 5.00081 5.03711 5.14413 5.16393 5.21691 5.39174 5.50903 5.74894 5.78494 5.79879 5.96145 6.12611 6.58794 6.63279 6.76534 6.87664 7.34245 7.38821 7.95644 8.75835 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.002203 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.756371 B =12709.375304 C =13802.610013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C -0.120 4.120 4 C -0.134 4.134 5 C -0.108 4.108 6 C -0.100 4.100 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.701 5.701 10 C 0.155 3.845 11 H 0.087 0.913 12 C 0.030 3.970 13 N -0.506 5.506 14 C 0.045 3.955 15 C 0.454 3.546 16 O -0.605 6.605 17 N -0.592 5.592 18 C -0.326 4.326 19 H 0.056 0.944 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.231 1.231 26 C 0.008 3.992 27 C 0.112 3.888 28 H 0.079 0.921 29 O -0.561 6.561 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.420 0.580 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.085 0.915 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 13.324 27.776 33.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.137 4.137 3 C -0.176 4.176 4 C -0.134 4.134 5 C -0.164 4.164 6 C -0.140 4.140 7 C 0.300 3.700 8 O -0.455 6.455 9 N -0.355 5.355 10 C 0.048 3.952 11 H 0.105 0.895 12 C -0.099 4.099 13 N -0.231 5.231 14 C -0.087 4.087 15 C 0.241 3.759 16 O -0.488 6.488 17 N -0.234 5.234 18 C -0.455 4.455 19 H 0.074 0.926 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.154 1.154 26 C -0.121 4.121 27 C 0.052 3.948 28 H 0.097 0.903 29 O -0.370 6.370 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.258 0.742 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.103 0.897 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 13.321 13.742 26.404 32.611 hybrid contribution -1.694 -0.680 0.005 1.826 sum 11.627 13.062 26.408 31.673 Atomic orbital electron populations 1.20876 0.91894 1.02236 1.02652 1.21645 0.96252 0.95188 1.00608 1.20887 0.99960 0.94506 1.02274 1.20996 0.95904 0.93253 1.03249 1.20728 0.91908 1.02272 1.01523 1.20798 1.03863 0.97146 0.92166 1.21184 0.76754 0.80103 0.91929 1.90705 1.47482 1.55439 1.51874 1.45734 1.57294 1.23834 1.08659 1.21497 0.98524 0.91809 0.83373 0.89468 1.23526 0.96584 0.95029 0.94738 1.64961 1.18084 1.02881 1.37165 1.22005 0.90129 0.99762 0.96780 1.20749 0.81865 0.86929 0.86339 1.90534 1.51842 1.42685 1.63787 1.42026 1.11985 1.34865 1.34552 1.18983 0.98060 1.15343 1.13112 0.92583 1.26109 0.99258 0.99801 0.96300 1.69804 1.21193 1.39039 1.27429 0.85374 0.77556 0.78227 0.80420 1.18340 1.19962 1.15449 1.23854 0.98188 0.94223 0.95802 1.22498 0.95589 0.92821 0.83931 0.90296 1.86195 1.95396 1.29701 1.25690 0.89856 0.92008 0.92488 0.91565 0.92035 0.90500 0.92233 0.92899 0.90442 0.86325 0.86321 0.74172 0.90066 0.91758 0.86540 0.89747 0.77577 0.91162 0.91947 0.91169 0.74409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.24 71.24 0.66 -0.95 16 2 C -0.14 -2.18 6.05 -16.49 -0.10 -2.28 16 3 C -0.12 -1.63 9.86 71.24 0.70 -0.93 16 4 C -0.13 -2.18 4.54 -16.49 -0.07 -2.25 16 5 C -0.11 -1.62 8.55 71.24 0.61 -1.01 16 6 C -0.10 -1.36 5.15 29.10 0.15 -1.21 16 7 C 0.51 10.51 7.74 87.66 0.68 11.19 16 8 O -0.58 -16.94 15.73 -3.04 -0.05 -16.99 16 9 N -0.70 -12.61 4.90 -438.32 -2.15 -14.76 16 10 C 0.15 3.47 3.36 45.88 0.15 3.62 16 11 H 0.09 2.30 7.64 -2.39 -0.02 2.28 16 12 C 0.03 0.73 6.17 86.45 0.53 1.27 16 13 N -0.51 -15.40 4.98 -886.06 -4.41 -19.80 16 14 C 0.04 1.40 5.32 85.56 0.46 1.85 16 15 C 0.45 20.46 7.63 87.66 0.67 21.13 16 16 O -0.60 -33.25 14.81 -3.08 -0.05 -33.30 16 17 N -0.59 -27.86 5.09 -306.98 -1.56 -29.43 16 18 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16 19 H 0.06 3.90 7.39 -2.90 -0.02 3.88 16 20 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 21 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 22 Si 0.96 38.67 27.73 68.60 1.90 40.57 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 26 C 0.01 0.21 5.67 86.45 0.49 0.70 16 27 C 0.11 2.31 4.42 31.49 0.14 2.45 16 28 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 29 O -0.56 -8.14 11.50 -148.98 -1.71 -9.85 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.06 0.82 6.20 -2.39 -0.01 0.80 16 33 H 0.07 0.89 5.85 -2.39 -0.01 0.87 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 0.83 7.98 -2.39 -0.02 0.81 16 37 H 0.05 0.95 7.74 -2.39 -0.02 0.93 16 38 H 0.08 0.89 7.76 -2.39 -0.02 0.87 16 39 H 0.12 1.16 6.09 -2.38 -0.01 1.15 16 40 H 0.12 1.10 8.11 -2.38 -0.02 1.08 16 41 H 0.42 5.86 7.17 -92.70 -0.67 5.20 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 1.37 7.91 -2.39 -0.02 1.35 16 44 H 0.12 3.11 8.08 -2.39 -0.02 3.09 16 45 H 0.08 2.14 7.77 -2.39 -0.02 2.12 16 46 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 47 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 48 H 0.06 1.52 7.69 -2.39 -0.02 1.50 16 49 H 0.07 2.36 7.24 -2.39 -0.02 2.35 16 50 H 0.40 3.12 9.12 -74.06 -0.68 2.44 16 Total: -1.00 -81.86 401.44 -2.29 -84.14 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.95 Total: 40.39 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.38 Total: 14.97 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -7.82 Total: -119.93 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -1.81 Total: -60.14 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.57 kcal Total: -81.86 -2.29 -84.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220158132.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.893 kcal (2) G-P(sol) polarization free energy of solvation -81.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds