Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.53001 * 109.47030 * 120.00308 * 2 1 3 5 5 C 1.50707 * 115.54770 * 294.77872 * 4 2 1 6 6 O 1.21279 * 119.99720 * 113.15753 * 5 4 2 7 7 N 1.34775 * 119.99794 * 293.15883 * 5 4 2 8 8 C 1.46502 * 119.99842 * 175.34846 * 7 5 4 9 9 H 1.08998 * 110.36738 * 32.81764 * 8 7 5 10 10 C 1.54379 * 110.32386 * 270.63437 * 8 7 5 11 11 N 1.48554 * 104.59565 * 217.25261 * 10 8 7 12 12 C 1.46898 * 111.00402 * 159.04082 * 11 10 8 13 13 C 1.50694 * 109.47634 * 174.70297 * 12 11 10 14 14 O 1.21296 * 119.99836 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99932 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99600 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00145 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99532 * 179.97438 * 16 15 13 19 19 N 1.31418 * 119.99722 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00530 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46981 * 89.99370 * 20 18 16 22 22 H 1.48499 * 109.47413 * 209.99918 * 20 18 16 23 23 H 1.48504 * 109.46843 * 329.99980 * 20 18 16 24 24 C 1.48560 * 104.22251 * 39.48204 * 11 10 8 25 25 C 1.54257 * 110.32290 * 154.99721 * 8 7 5 26 26 H 1.09004 * 110.32539 * 237.78867 * 25 8 7 27 27 O 1.42894 * 110.41555 * 359.95661 * 25 8 7 28 28 C 1.53002 * 117.50202 * 80.44901 * 4 2 1 29 29 C 1.52998 * 117.50279 * 149.11092 * 4 2 1 30 30 H 1.08998 * 109.47127 * 305.55535 * 1 2 3 31 31 H 1.08994 * 109.47383 * 65.56236 * 1 2 3 32 32 H 1.09008 * 109.47073 * 185.55787 * 1 2 3 33 33 H 1.09002 * 109.47035 * 239.99983 * 2 1 3 34 34 H 1.08997 * 109.47544 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47295 * 300.00472 * 3 2 1 36 36 H 1.09002 * 109.47107 * 60.00028 * 3 2 1 37 37 H 0.97000 * 120.00369 * 355.34064 * 7 5 4 38 38 H 1.09006 * 110.40880 * 98.47119 * 10 8 7 39 39 H 1.09001 * 110.50937 * 336.08010 * 10 8 7 40 40 H 1.08999 * 109.47026 * 294.70839 * 12 11 10 41 41 H 1.09010 * 109.46813 * 54.70386 * 12 11 10 42 42 H 0.96997 * 120.00485 * 0.02562 * 15 13 12 43 43 H 0.96998 * 119.99762 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.41068 * 201.74106 * 24 11 10 45 45 H 1.08995 * 110.51333 * 79.34868 * 24 11 10 46 46 H 0.96695 * 114.00902 * 178.51576 * 27 25 8 47 47 H 1.08995 * 117.49565 * 215.00517 * 28 4 2 48 48 H 1.08996 * 117.49537 * 0.02562 * 28 4 2 49 49 H 1.09000 * 117.49399 * 359.97438 * 29 4 2 50 50 H 1.08999 * 117.49970 * 144.98936 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.7193 -0.0536 2.5617 6 8 0.9583 -0.5849 3.3423 7 7 2.2783 1.1339 2.8679 8 6 1.8894 1.8316 4.0960 9 1 1.6490 1.1138 4.8802 10 6 0.6832 2.7571 3.8279 11 7 0.9410 3.9592 4.6617 12 6 0.1823 5.1157 4.1671 13 6 0.3660 6.2773 5.1093 14 8 1.0610 6.1541 6.0957 15 7 -0.2412 7.4535 4.8553 16 6 -0.0745 8.5101 5.7128 17 1 0.5437 8.4001 6.5916 18 6 -0.7001 9.7228 5.4507 19 7 -0.5399 10.7359 6.2724 20 14 -1.7687 9.9133 3.9305 21 1 -3.1692 9.5457 4.2607 22 1 -1.7232 11.3233 3.4668 23 1 -1.2634 9.0221 2.8555 24 6 2.4033 4.1867 4.5318 25 6 3.0211 2.7721 4.5591 26 1 3.3360 2.5160 5.5707 27 8 4.1300 2.6975 3.6610 28 6 2.0632 -2.2509 1.2219 29 6 3.3735 -1.4637 1.1415 30 1 -0.3633 0.5976 0.8360 31 1 -0.3634 0.4251 -0.9355 32 1 -0.3634 -1.0229 0.0995 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.9382 1.5266 2.2752 38 1 -0.2435 2.2725 4.1356 39 1 0.6372 3.0287 2.7733 40 1 0.5441 5.3907 3.1763 41 1 -0.8754 4.8585 4.1092 42 1 -0.7967 7.5522 4.0663 43 1 -0.9769 11.5823 6.0897 44 1 2.7719 4.7786 5.3697 45 1 2.6304 4.6825 3.5881 46 1 4.8625 3.2855 3.8907 47 1 1.8465 -2.7742 2.1531 48 1 1.7155 -2.7433 0.3137 49 1 3.8872 -1.4385 0.1806 50 1 4.0189 -1.4690 2.0199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220325185.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -79.882787 kcal Electronic energy + Delta-G solvation = -30740.312150 eV Core-core repulsion = 26575.771481 eV Total energy + Delta-G solvation = -4164.540669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82042 -39.50450 -38.16551 -37.22843 -35.89765 -34.56696 -33.92275 -33.54117 -31.71863 -30.45054 -28.20283 -27.46809 -26.76463 -24.68781 -23.93381 -22.69554 -22.18240 -21.51865 -20.57772 -19.79417 -19.37722 -18.33257 -17.62855 -16.83812 -16.18471 -16.14766 -15.92215 -15.54457 -15.10738 -15.02252 -14.94583 -14.34018 -14.18076 -13.85604 -13.74126 -13.62196 -13.49844 -13.19286 -13.09995 -12.98382 -12.50063 -12.43159 -12.17595 -12.00649 -11.93799 -11.85466 -11.60235 -11.54975 -11.47688 -11.31193 -11.20322 -10.95945 -10.65721 -10.62287 -10.37402 -10.16395 -10.00435 -9.87424 -9.58550 -9.14552 -8.70930 -8.23465 -8.17533 -6.33684 -3.85215 2.41600 2.82080 2.99895 3.04996 3.13080 3.35410 3.69420 3.78770 4.07152 4.11145 4.14180 4.41851 4.43976 4.47792 4.52180 4.58152 4.87734 4.89987 4.94698 5.01541 5.06736 5.16807 5.18574 5.26342 5.34589 5.35909 5.42204 5.50587 5.53557 5.56013 5.58386 5.61469 5.68613 5.74496 5.78934 5.83982 5.86181 5.90844 5.94367 6.01653 6.14544 6.28547 6.85386 6.94761 7.36393 7.44732 7.55188 8.11107 8.12032 8.57122 8.92261 9.39471 9.79763 10.79360 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.002508 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.719224 B =11163.316157 C =11914.268997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.161 4.161 4 C -0.153 4.153 5 C 0.552 3.448 6 O -0.539 6.539 7 N -0.704 5.704 8 C 0.149 3.851 9 H 0.107 0.893 10 C 0.020 3.980 11 N -0.477 5.477 12 C 0.033 3.967 13 C 0.454 3.546 14 O -0.560 6.560 15 N -0.591 5.591 16 C -0.304 4.304 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.879 3.121 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.005 3.995 25 C 0.094 3.906 26 H 0.080 0.920 27 O -0.567 6.567 28 C -0.145 4.145 29 C -0.160 4.160 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.107 0.893 45 H 0.050 0.950 46 H 0.387 0.613 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -21.970 -16.205 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.068 4.068 3 C -0.218 4.218 4 C -0.156 4.156 5 C 0.338 3.662 6 O -0.415 6.415 7 N -0.359 5.359 8 C 0.043 3.957 9 H 0.125 0.875 10 C -0.110 4.110 11 N -0.202 5.202 12 C -0.099 4.099 13 C 0.239 3.761 14 O -0.442 6.442 15 N -0.230 5.230 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.124 4.124 25 C 0.034 3.966 26 H 0.097 0.903 27 O -0.374 6.374 28 C -0.182 4.182 29 C -0.197 4.197 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.069 0.931 46 H 0.236 0.764 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.543 -22.682 -14.633 27.775 hybrid contribution -0.148 1.306 -2.018 2.409 sum 6.396 -21.376 -16.652 27.841 Atomic orbital electron populations 1.21819 0.94395 1.02355 1.01898 1.20598 0.96184 0.95901 0.94149 1.22079 1.01337 0.95570 1.02850 1.21530 1.03958 0.95483 0.94623 1.19500 0.79846 0.80469 0.86375 1.90701 1.36182 1.64241 1.50410 1.45952 1.44273 1.20960 1.24685 1.21756 0.92619 0.93412 0.87953 0.87518 1.23627 0.99080 0.91949 0.96318 1.65100 1.04456 1.02413 1.48188 1.22110 0.99856 0.91436 0.96520 1.19546 0.84934 0.83356 0.88237 1.90541 1.41450 1.82693 1.29485 1.42202 1.45271 1.11268 1.24290 1.19418 1.29661 0.88137 1.06087 0.86257 1.25040 0.97898 0.95375 0.97849 1.69622 1.43287 1.02687 1.36483 0.86677 0.81379 0.78595 0.82754 1.19557 1.20174 1.19580 1.23946 0.89244 0.96462 1.02724 1.22851 0.86136 0.94391 0.93233 0.90255 1.86243 1.29060 1.67722 1.54329 1.22987 0.99840 0.91244 1.04129 1.23108 0.90126 1.02613 1.03846 0.92570 0.92342 0.92244 0.90230 0.92171 0.92007 0.91716 0.74913 0.89175 0.93313 0.93023 0.88892 0.79728 0.91596 0.87512 0.93144 0.76448 0.87875 0.87969 0.87867 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.99 37.16 0.33 -0.86 16 2 C -0.05 -0.37 2.75 -90.62 -0.25 -0.61 16 3 C -0.16 -1.16 7.95 37.16 0.30 -0.87 16 4 C -0.15 -1.33 1.47 -155.66 -0.23 -1.56 16 5 C 0.55 6.48 6.27 -10.98 -0.07 6.42 16 6 O -0.54 -8.31 16.36 5.56 0.09 -8.21 16 7 N -0.70 -7.51 3.58 -52.47 -0.19 -7.70 16 8 C 0.15 1.80 3.45 -66.55 -0.23 1.57 16 9 H 0.11 1.43 7.50 -51.93 -0.39 1.04 16 10 C 0.02 0.25 6.20 -2.19 -0.01 0.24 16 11 N -0.48 -7.46 5.06 -231.41 -1.17 -8.63 16 12 C 0.03 0.54 5.30 -4.98 -0.03 0.52 16 13 C 0.45 10.12 7.59 -10.99 -0.08 10.04 16 14 O -0.56 -14.58 14.42 5.54 0.08 -14.50 16 15 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 16 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 17 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 18 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 19 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 20 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.36 6.52 56.52 0.37 -5.00 16 24 C 0.00 0.07 5.53 -2.18 -0.01 0.05 16 25 C 0.09 1.06 4.42 -25.35 -0.11 0.95 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 O -0.57 -5.16 11.54 -35.23 -0.41 -5.57 16 28 C -0.14 -1.13 9.78 -26.69 -0.26 -1.39 16 29 C -0.16 -1.11 9.93 -26.69 -0.26 -1.38 16 30 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.56 5.95 -51.93 -0.31 0.25 16 37 H 0.41 3.97 5.47 -40.82 -0.22 3.74 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 40 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 41 H 0.09 1.38 8.13 -51.92 -0.42 0.96 16 42 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.11 1.79 6.91 -51.93 -0.36 1.43 16 45 H 0.05 0.69 7.76 -51.93 -0.40 0.29 16 46 H 0.39 2.21 9.11 45.56 0.42 2.62 16 47 H 0.10 0.94 8.02 -51.93 -0.42 0.53 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -34.06 399.05 -8.09 -42.15 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.35 Total: 15.21 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.17 Total: 5.47 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.64 Total: -55.06 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.24 Total: -28.28 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.06 -8.09 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220325185.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.732 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds