Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.53001 * 109.47030 * 120.00308 * 2 1 3 5 5 C 1.50707 * 115.54770 * 294.77872 * 4 2 1 6 6 O 1.21279 * 119.99720 * 113.15753 * 5 4 2 7 7 N 1.34775 * 119.99794 * 293.15883 * 5 4 2 8 8 C 1.46502 * 119.99842 * 175.34846 * 7 5 4 9 9 H 1.08998 * 110.36738 * 32.81764 * 8 7 5 10 10 C 1.54379 * 110.32386 * 270.63437 * 8 7 5 11 11 N 1.48554 * 104.59565 * 217.25261 * 10 8 7 12 12 C 1.46898 * 111.00402 * 159.04082 * 11 10 8 13 13 C 1.50694 * 109.47634 * 174.70297 * 12 11 10 14 14 O 1.21296 * 119.99836 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99932 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99600 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00145 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99532 * 179.97438 * 16 15 13 19 19 N 1.31418 * 119.99722 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00530 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46981 * 89.99370 * 20 18 16 22 22 H 1.48499 * 109.47413 * 209.99918 * 20 18 16 23 23 H 1.48504 * 109.46843 * 329.99980 * 20 18 16 24 24 C 1.48560 * 104.22251 * 39.48204 * 11 10 8 25 25 C 1.54257 * 110.32290 * 154.99721 * 8 7 5 26 26 H 1.09004 * 110.32539 * 237.78867 * 25 8 7 27 27 O 1.42894 * 110.41555 * 359.95661 * 25 8 7 28 28 C 1.53002 * 117.50202 * 80.44901 * 4 2 1 29 29 C 1.52998 * 117.50279 * 149.11092 * 4 2 1 30 30 H 1.08998 * 109.47127 * 305.55535 * 1 2 3 31 31 H 1.08994 * 109.47383 * 65.56236 * 1 2 3 32 32 H 1.09008 * 109.47073 * 185.55787 * 1 2 3 33 33 H 1.09002 * 109.47035 * 239.99983 * 2 1 3 34 34 H 1.08997 * 109.47544 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47295 * 300.00472 * 3 2 1 36 36 H 1.09002 * 109.47107 * 60.00028 * 3 2 1 37 37 H 0.97000 * 120.00369 * 355.34064 * 7 5 4 38 38 H 1.09006 * 110.40880 * 98.47119 * 10 8 7 39 39 H 1.09001 * 110.50937 * 336.08010 * 10 8 7 40 40 H 1.08999 * 109.47026 * 294.70839 * 12 11 10 41 41 H 1.09010 * 109.46813 * 54.70386 * 12 11 10 42 42 H 0.96997 * 120.00485 * 0.02562 * 15 13 12 43 43 H 0.96998 * 119.99762 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.41068 * 201.74106 * 24 11 10 45 45 H 1.08995 * 110.51333 * 79.34868 * 24 11 10 46 46 H 0.96695 * 114.00902 * 178.51576 * 27 25 8 47 47 H 1.08995 * 117.49565 * 215.00517 * 28 4 2 48 48 H 1.08996 * 117.49537 * 0.02562 * 28 4 2 49 49 H 1.09000 * 117.49399 * 359.97438 * 29 4 2 50 50 H 1.08999 * 117.49970 * 144.98936 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.7193 -0.0536 2.5617 6 8 0.9583 -0.5849 3.3423 7 7 2.2783 1.1339 2.8679 8 6 1.8894 1.8316 4.0960 9 1 1.6490 1.1138 4.8802 10 6 0.6832 2.7571 3.8279 11 7 0.9410 3.9592 4.6617 12 6 0.1823 5.1157 4.1671 13 6 0.3660 6.2773 5.1093 14 8 1.0610 6.1541 6.0957 15 7 -0.2412 7.4535 4.8553 16 6 -0.0745 8.5101 5.7128 17 1 0.5437 8.4001 6.5916 18 6 -0.7001 9.7228 5.4507 19 7 -0.5399 10.7359 6.2724 20 14 -1.7687 9.9133 3.9305 21 1 -3.1692 9.5457 4.2607 22 1 -1.7232 11.3233 3.4668 23 1 -1.2634 9.0221 2.8555 24 6 2.4033 4.1867 4.5318 25 6 3.0211 2.7721 4.5591 26 1 3.3360 2.5160 5.5707 27 8 4.1300 2.6975 3.6610 28 6 2.0632 -2.2509 1.2219 29 6 3.3735 -1.4637 1.1415 30 1 -0.3633 0.5976 0.8360 31 1 -0.3634 0.4251 -0.9355 32 1 -0.3634 -1.0229 0.0995 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.9382 1.5266 2.2752 38 1 -0.2435 2.2725 4.1356 39 1 0.6372 3.0287 2.7733 40 1 0.5441 5.3907 3.1763 41 1 -0.8754 4.8585 4.1092 42 1 -0.7967 7.5522 4.0663 43 1 -0.9769 11.5823 6.0897 44 1 2.7719 4.7786 5.3697 45 1 2.6304 4.6825 3.5881 46 1 4.8625 3.2855 3.8907 47 1 1.8465 -2.7742 2.1531 48 1 1.7155 -2.7433 0.3137 49 1 3.8872 -1.4385 0.1806 50 1 4.0189 -1.4690 2.0199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220325185.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -108.152287 kcal Electronic energy + Delta-G solvation = -30741.538007 eV Core-core repulsion = 26575.771481 eV Total energy + Delta-G solvation = -4165.766526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71066 -40.70800 -39.67184 -38.05296 -36.92140 -35.97881 -35.39801 -34.18614 -33.76467 -31.62882 -29.24503 -28.33308 -27.95307 -26.07092 -25.06163 -23.24616 -22.96336 -22.65314 -21.55991 -21.25647 -20.59861 -20.19609 -18.53178 -17.81889 -17.61305 -17.05536 -16.79375 -16.73908 -16.54977 -16.33365 -15.93526 -15.59629 -15.13854 -14.98910 -14.93027 -14.69061 -14.41714 -14.35726 -14.18331 -14.09708 -14.04296 -13.67523 -13.33699 -13.04963 -12.98583 -12.60215 -12.58428 -12.55669 -12.42528 -12.41491 -12.15787 -12.06883 -11.98612 -11.88874 -11.50469 -11.23950 -11.07577 -10.99370 -10.73999 -10.46521 -10.25248 -10.07200 -9.50580 -8.41844 -6.02600 1.29095 1.34916 1.43362 1.54246 1.92712 1.95487 2.22127 2.60278 2.76555 3.03127 3.13256 3.22778 3.44571 3.55483 3.67129 3.79375 3.87265 3.94747 4.01405 4.11433 4.15800 4.27824 4.32106 4.36741 4.40437 4.42095 4.51776 4.59381 4.75109 4.78019 4.79938 4.84582 4.90029 4.96411 4.99125 5.00837 5.06158 5.21488 5.22450 5.34846 5.38588 5.43924 5.50680 5.72928 5.77973 5.95964 6.56856 6.58428 6.73449 6.87279 7.25642 7.38371 7.94791 8.75644 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.002508 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.719224 B =11163.316157 C =11914.268997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.160 4.160 4 C -0.163 4.163 5 C 0.549 3.451 6 O -0.583 6.583 7 N -0.692 5.692 8 C 0.149 3.851 9 H 0.090 0.910 10 C 0.029 3.971 11 N -0.502 5.502 12 C 0.044 3.956 13 C 0.454 3.546 14 O -0.604 6.604 15 N -0.592 5.592 16 C -0.326 4.326 17 H 0.057 0.943 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.231 1.231 24 C 0.009 3.991 25 C 0.111 3.889 26 H 0.079 0.921 27 O -0.562 6.562 28 C -0.150 4.150 29 C -0.142 4.142 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.420 0.580 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.404 0.596 47 H 0.082 0.918 48 H 0.122 0.878 49 H 0.130 0.870 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -23.323 -20.699 31.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.217 4.217 4 C -0.166 4.166 5 C 0.336 3.664 6 O -0.463 6.463 7 N -0.346 5.346 8 C 0.043 3.957 9 H 0.108 0.892 10 C -0.099 4.099 11 N -0.228 5.228 12 C -0.088 4.088 13 C 0.241 3.759 14 O -0.488 6.488 15 N -0.234 5.234 16 C -0.455 4.455 17 H 0.075 0.925 18 C -0.214 4.214 19 N -0.575 5.575 20 Si 0.783 3.217 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.154 1.154 24 C -0.120 4.120 25 C 0.050 3.950 26 H 0.097 0.903 27 O -0.371 6.371 28 C -0.187 4.187 29 C -0.179 4.179 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.260 0.740 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.255 0.745 47 H 0.101 0.899 48 H 0.141 0.859 49 H 0.148 0.852 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.476 -24.048 -19.154 31.419 hybrid contribution -0.009 1.676 -0.483 1.744 sum 6.466 -22.372 -19.637 30.462 Atomic orbital electron populations 1.21824 0.95284 1.01751 1.01608 1.20627 0.95375 0.96173 0.94100 1.22069 1.02000 0.95227 1.02436 1.21548 1.05833 0.95831 0.93421 1.20096 0.78914 0.80289 0.87059 1.90680 1.38185 1.65335 1.52093 1.45866 1.44043 1.20604 1.24062 1.21585 0.92767 0.93121 0.88253 0.89229 1.23541 0.99106 0.90666 0.96616 1.64997 1.05211 1.02904 1.49663 1.22024 1.01750 0.89205 0.95774 1.20701 0.82802 0.84170 0.88178 1.90530 1.42920 1.83605 1.31763 1.42023 1.46236 1.10665 1.24428 1.18986 1.30217 0.90515 1.05785 0.92527 1.26097 0.99110 0.94056 1.02102 1.69803 1.44773 1.03599 1.39277 0.85387 0.78915 0.79306 0.78055 1.18334 1.19975 1.15447 1.23841 0.88726 0.97753 1.01651 1.22529 0.86506 0.92286 0.93638 0.90310 1.86210 1.28974 1.68239 1.53663 1.23048 1.00842 0.90694 1.04137 1.23209 0.89323 1.00425 1.04946 0.94856 0.90955 0.92663 0.87885 0.91103 0.91132 0.93360 0.73969 0.89773 0.91729 0.89874 0.86404 0.77570 0.91155 0.90889 0.92218 0.74457 0.89913 0.85936 0.85192 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.99 71.98 0.65 -1.45 16 2 C -0.04 -0.52 2.75 -10.79 -0.03 -0.54 16 3 C -0.16 -1.78 7.95 71.98 0.57 -1.21 16 4 C -0.16 -2.50 1.47 -52.92 -0.08 -2.58 16 5 C 0.55 12.41 6.27 87.66 0.55 12.96 16 6 O -0.58 -18.21 16.36 -3.03 -0.05 -18.26 16 7 N -0.69 -13.76 3.58 -438.29 -1.57 -15.33 16 8 C 0.15 3.50 3.45 45.89 0.16 3.66 16 9 H 0.09 2.45 7.50 -2.39 -0.02 2.43 16 10 C 0.03 0.72 6.20 86.45 0.54 1.26 16 11 N -0.50 -15.27 5.06 -886.06 -4.49 -19.76 16 12 C 0.04 1.36 5.30 85.56 0.45 1.82 16 13 C 0.45 20.29 7.59 87.66 0.66 20.96 16 14 O -0.60 -32.84 14.42 -3.08 -0.04 -32.89 16 15 N -0.59 -27.66 5.09 -306.99 -1.56 -29.22 16 16 C -0.33 -18.93 10.16 84.04 0.85 -18.08 16 17 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 18 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 19 N -0.93 -56.05 13.96 21.66 0.30 -55.75 16 20 Si 0.96 38.50 27.74 68.60 1.90 40.41 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 24 C 0.01 0.24 5.53 86.45 0.48 0.72 16 25 C 0.11 2.40 4.42 31.49 0.14 2.54 16 26 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 27 O -0.56 -9.01 11.54 -148.98 -1.72 -10.73 16 28 C -0.15 -2.08 9.78 30.62 0.30 -1.78 16 29 C -0.14 -1.57 9.93 30.62 0.30 -1.26 16 30 H 0.03 0.61 7.88 -2.39 -0.02 0.60 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.10 0.78 8.09 -2.39 -0.02 0.76 16 34 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.70 5.95 -2.39 -0.01 0.68 16 37 H 0.42 7.07 5.47 -92.71 -0.51 6.56 16 38 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.06 1.39 7.91 -2.39 -0.02 1.37 16 40 H 0.08 2.11 7.88 -2.39 -0.02 2.09 16 41 H 0.12 3.12 8.13 -2.38 -0.02 3.10 16 42 H 0.39 15.06 5.76 -92.71 -0.53 14.52 16 43 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.07 2.54 6.91 -2.39 -0.02 2.52 16 45 H 0.06 1.52 7.76 -2.39 -0.02 1.50 16 46 H 0.40 3.70 9.11 -74.06 -0.67 3.02 16 47 H 0.08 1.49 8.02 -2.39 -0.02 1.48 16 48 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -80.49 399.05 -2.01 -82.50 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: -0.80 Total: 42.37 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 6.02 Total: 16.66 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -7.31 Total: -120.05 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -1.81 Total: -61.87 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.41 kcal Total: -80.49 -2.01 -82.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220325185.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.655 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds