Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47132 * 2 1 4 4 C 1.53003 * 109.46847 * 119.99362 * 2 1 3 5 5 H 1.09003 * 112.76207 * 316.46355 * 4 2 1 6 6 N 1.47178 * 113.49569 * 185.63168 * 4 2 1 7 7 C 1.34780 * 135.98360 * 91.82423 * 6 4 2 8 8 O 1.21584 * 120.00293 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99531 * 180.02562 * 7 6 4 10 10 C 1.46504 * 120.00073 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00523 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99760 * 179.97438 * 11 10 9 14 14 C 1.37093 * 119.99975 * 180.26946 * 13 11 10 15 15 H 1.08001 * 119.99995 * 359.73617 * 14 13 11 16 16 C 1.38952 * 120.00271 * 179.72275 * 14 13 11 17 17 N 1.31408 * 119.99758 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00424 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46994 * 90.00214 * 18 16 14 20 20 H 1.48495 * 109.47227 * 210.00654 * 18 16 14 21 21 H 1.48505 * 109.46990 * 330.00636 * 18 16 14 22 22 C 1.47186 * 88.02136 * 272.08529 * 6 4 2 23 23 C 1.52864 * 113.49241 * 87.36388 * 4 2 1 24 24 C 1.52629 * 114.20769 * 335.16043 * 23 4 2 25 25 C 1.53311 * 108.88326 * 279.95270 * 24 23 4 26 26 O 1.42897 * 109.30045 * 304.98090 * 25 24 23 27 27 C 1.42907 * 114.39882 * 63.11344 * 26 25 24 28 28 C 1.52624 * 114.20950 * 202.98710 * 23 4 2 29 29 H 1.09004 * 109.47345 * 278.13237 * 1 2 3 30 30 H 1.09004 * 109.46871 * 38.12947 * 1 2 3 31 31 H 1.08994 * 109.46853 * 158.12920 * 1 2 3 32 32 H 1.08993 * 109.47588 * 239.99445 * 2 1 3 33 33 H 1.09000 * 109.46911 * 185.60604 * 3 2 1 34 34 H 1.09002 * 109.46780 * 305.60139 * 3 2 1 35 35 H 1.08997 * 109.47177 * 65.60902 * 3 2 1 36 36 H 0.97002 * 120.00133 * 0.02562 * 9 7 6 37 37 H 1.08998 * 109.46767 * 60.00127 * 10 9 7 38 38 H 1.08998 * 109.46790 * 300.00398 * 10 9 7 39 39 H 0.97004 * 120.00318 * 0.02562 * 13 11 10 40 40 H 0.97005 * 120.00197 * 179.97438 * 17 16 14 41 41 H 1.09004 * 113.48901 * 87.91730 * 22 6 4 42 42 H 1.09004 * 113.49258 * 218.42539 * 22 6 4 43 43 H 1.09001 * 109.56826 * 39.76819 * 24 23 4 44 44 H 1.08999 * 109.57178 * 160.12777 * 24 23 4 45 45 H 1.09004 * 109.49626 * 185.04249 * 25 24 23 46 46 H 1.09000 * 109.53152 * 64.95057 * 25 24 23 47 47 H 1.08995 * 109.49984 * 176.94431 * 27 26 25 48 48 H 1.09006 * 109.52349 * 56.85581 * 27 26 25 49 49 H 1.09003 * 109.56726 * 199.87329 * 28 23 4 50 50 H 1.09007 * 109.56566 * 320.22382 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.4935 -0.4417 2.1502 6 7 3.5020 -0.6592 1.4070 7 6 4.3762 0.1572 2.0281 8 8 3.9720 1.1216 2.6487 9 7 5.6983 -0.0954 1.9614 10 6 6.6486 0.7917 2.6370 11 6 8.0518 0.2920 2.4086 12 8 8.2399 -0.7065 1.7462 13 7 9.0981 0.9554 2.9395 14 6 10.3751 0.5040 2.7271 15 1 10.5424 -0.3856 2.1380 16 6 11.4541 1.1910 3.2697 17 7 11.2505 2.2732 3.9868 18 14 13.1941 0.5764 2.9797 19 1 13.7388 1.1965 1.7452 20 1 14.0485 0.9447 4.1371 21 1 13.1783 -0.9006 2.8262 22 6 3.5912 -1.8758 0.5834 23 6 2.1823 -2.2320 1.0655 24 6 1.2818 -2.8181 -0.0186 25 6 -0.1304 -2.9950 0.5514 26 8 -0.0644 -3.7864 1.7394 27 6 0.6820 -3.1927 2.8036 28 6 2.1424 -3.0275 2.3674 29 1 -0.3634 0.1454 1.0173 30 1 -0.3633 0.8084 -0.6346 31 1 -0.3633 -0.9537 -0.3828 32 1 1.8934 -0.5139 -0.8898 33 1 3.1254 1.4441 -0.1004 34 1 1.5971 1.9844 -0.8356 35 1 1.7611 1.9265 0.9359 36 1 6.0208 -0.8645 1.4660 37 1 6.4366 0.8045 3.7061 38 1 6.5526 1.8004 2.2354 39 1 8.9479 1.7542 3.4690 40 1 12.0038 2.7527 4.3658 41 1 3.6462 -1.6733 -0.4862 42 1 4.3572 -2.5739 0.9211 43 1 1.2488 -2.1403 -0.8716 44 1 1.6722 -3.7857 -0.3338 45 1 -0.7598 -3.4953 -0.1846 46 1 -0.5529 -2.0184 0.7878 47 1 0.6354 -3.8349 3.6831 48 1 0.2611 -2.2162 3.0433 49 1 2.5896 -4.0089 2.2094 50 1 2.6957 -2.4923 3.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227973921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -98.676091 kcal Electronic energy + Delta-G solvation = -30874.608152 eV Core-core repulsion = 26709.252545 eV Total energy + Delta-G solvation = -4165.355607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.75991 -40.73999 -39.80168 -38.61449 -36.26442 -35.66832 -35.16769 -33.48945 -33.32051 -32.07282 -29.90582 -28.10755 -27.93450 -26.87791 -26.10896 -24.78848 -23.81586 -21.90801 -21.39809 -21.18165 -20.12250 -19.29234 -18.84943 -17.70859 -17.26452 -17.21539 -17.10887 -16.95424 -16.52432 -16.32731 -15.99949 -15.83876 -15.63386 -15.26517 -15.21643 -14.94700 -14.37526 -14.06811 -14.01214 -13.66138 -13.59346 -13.56344 -13.50074 -13.36050 -12.99586 -12.93827 -12.91892 -12.48972 -12.47990 -12.27431 -12.13997 -11.98452 -11.89049 -11.59494 -11.57108 -11.38563 -11.18814 -10.98749 -10.59584 -10.36535 -10.28965 -10.12231 -9.54602 -8.53122 -6.03668 1.31994 1.34742 1.42150 1.54817 1.86216 2.07616 2.25843 2.76523 3.00980 3.04587 3.13823 3.15279 3.50903 3.76744 3.90219 3.91951 3.97825 4.07819 4.14765 4.23917 4.31177 4.36008 4.39609 4.44374 4.46582 4.53994 4.59725 4.67445 4.69695 4.76935 4.78103 4.82069 4.83861 4.93147 4.99467 5.03996 5.15064 5.17205 5.23722 5.27089 5.29004 5.36245 5.38903 5.49281 5.89382 6.17904 6.34304 6.45140 6.95742 7.00773 7.38702 7.50063 7.90927 8.63870 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021580 B = 0.002287 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.171257 B =12239.363678 C =12814.525818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.135 4.135 4 C 0.165 3.835 5 H 0.069 0.931 6 N -0.660 5.660 7 C 0.733 3.267 8 O -0.629 6.629 9 N -0.724 5.724 10 C 0.143 3.857 11 C 0.434 3.566 12 O -0.624 6.624 13 N -0.558 5.558 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.916 5.916 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.269 1.269 22 C 0.103 3.897 23 C -0.076 4.076 24 C -0.136 4.136 25 C 0.044 3.956 26 O -0.398 6.398 27 C 0.066 3.934 28 C -0.127 4.127 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.407 0.593 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.051 0.949 49 H 0.083 0.917 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.702 -8.816 -8.704 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.193 4.193 4 C 0.062 3.938 5 H 0.087 0.913 6 N -0.397 5.397 7 C 0.436 3.564 8 O -0.510 6.510 9 N -0.381 5.381 10 C 0.015 3.985 11 C 0.221 3.779 12 O -0.512 6.512 13 N -0.194 5.194 14 C -0.466 4.466 15 H 0.104 0.896 16 C -0.212 4.212 17 N -0.556 5.556 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.194 1.194 22 C -0.020 4.020 23 C -0.077 4.077 24 C -0.174 4.174 25 C -0.032 4.032 26 O -0.317 6.317 27 C -0.011 4.011 28 C -0.165 4.165 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.244 0.756 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.233 0.767 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.104 0.896 45 H 0.130 0.870 46 H 0.089 0.911 47 H 0.120 0.880 48 H 0.069 0.931 49 H 0.102 0.898 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.615 -8.652 -8.423 27.417 hybrid contribution 1.690 0.633 0.385 1.845 sum -22.925 -8.020 -8.038 25.583 Atomic orbital electron populations 1.22162 0.92330 1.03918 1.02470 1.21418 0.97643 0.95356 0.97046 1.21684 0.99536 0.96674 1.01394 1.22670 0.78781 0.94077 0.98276 0.91296 1.48753 1.08271 1.29156 1.53559 1.15252 0.80166 0.81194 0.79794 1.90868 1.78614 1.31512 1.50045 1.44651 1.03765 1.32221 1.57464 1.20564 0.85326 0.93960 0.98654 1.20341 0.87010 0.86121 0.84408 1.90461 1.86054 1.29024 1.45627 1.41834 1.05336 1.26246 1.45938 1.19736 0.82576 1.11539 1.32783 0.89553 1.26156 1.04050 0.95589 0.95364 1.69684 1.34338 1.17816 1.33779 0.84854 0.76243 0.78565 0.78237 1.19482 1.19589 1.19401 1.23320 0.97651 0.84375 0.96605 1.21744 0.95442 0.93216 0.97310 1.22157 0.95159 1.02801 0.97241 1.23198 0.96249 0.96831 0.86953 1.87883 1.73145 1.46861 1.23832 1.22581 0.89532 0.98738 0.90252 1.21834 0.98483 1.00536 0.95600 0.92848 0.91251 0.89325 0.88609 0.95609 0.90964 0.94463 0.75612 0.89290 0.89311 0.76722 0.91020 0.87898 0.90475 0.87890 0.89572 0.87010 0.91117 0.88013 0.93102 0.89832 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 7.82 71.98 0.56 -0.96 16 2 C -0.10 -1.44 2.04 -10.79 -0.02 -1.47 16 3 C -0.14 -2.90 8.78 71.98 0.63 -2.27 16 4 C 0.17 3.18 3.12 41.96 0.13 3.31 16 5 H 0.07 1.54 7.63 -2.39 -0.02 1.53 16 6 N -0.66 -16.87 2.76 -850.93 -2.35 -19.22 16 7 C 0.73 25.43 8.25 179.05 1.48 26.91 16 8 O -0.63 -25.99 17.12 -3.98 -0.07 -26.06 16 9 N -0.72 -26.02 5.53 -482.31 -2.67 -28.69 16 10 C 0.14 5.59 6.15 85.63 0.53 6.12 16 11 C 0.43 20.63 7.85 87.65 0.69 21.31 16 12 O -0.62 -32.87 15.24 -3.06 -0.05 -32.92 16 13 N -0.56 -28.58 5.29 -306.99 -1.62 -30.21 16 14 C -0.34 -18.76 9.68 84.04 0.81 -17.95 16 15 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 17 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 18 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 C 0.10 1.87 7.09 83.43 0.59 2.47 16 23 C -0.08 -1.13 0.82 -52.44 -0.04 -1.17 16 24 C -0.14 -1.26 4.72 30.58 0.14 -1.12 16 25 C 0.04 0.42 5.93 72.09 0.43 0.85 16 26 O -0.40 -6.17 10.72 -148.98 -1.60 -7.77 16 27 C 0.07 0.97 6.83 72.09 0.49 1.46 16 28 C -0.13 -2.08 5.35 30.57 0.16 -1.92 16 29 H 0.05 0.61 7.72 -2.39 -0.02 0.60 16 30 H 0.07 0.63 7.86 -2.38 -0.02 0.61 16 31 H 0.09 0.52 4.50 -2.39 -0.01 0.51 16 32 H 0.10 1.15 5.60 -2.39 -0.01 1.13 16 33 H 0.02 0.68 7.46 -2.39 -0.02 0.66 16 34 H 0.07 1.24 8.01 -2.39 -0.02 1.22 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.41 14.47 7.15 -92.71 -0.66 13.80 16 37 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.09 3.34 8.14 -2.39 -0.02 3.33 16 39 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 40 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 41 H 0.10 1.51 7.42 -2.38 -0.02 1.49 16 42 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 43 H 0.10 0.63 5.09 -2.39 -0.01 0.62 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.07 0.61 5.00 -2.39 -0.01 0.60 16 47 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 48 H 0.05 0.74 7.91 -2.38 -0.02 0.72 16 49 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.22 7.95 -2.38 -0.02 1.20 16 Total: -1.00 -70.81 388.31 0.60 -70.22 By element: Atomic # 1 Polarization: 44.44 SS G_CDS: -0.42 Total: 44.02 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 7.05 Total: 35.49 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -6.36 Total: -126.97 kcal Atomic # 8 Polarization: -65.04 SS G_CDS: -1.71 Total: -66.75 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -70.81 0.60 -70.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227973921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.457 kcal (2) G-P(sol) polarization free energy of solvation -70.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds