Wall clock time and date at job start Sat Apr 11 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99852 * 2 1 4 4 C 1.53001 * 109.47238 * 124.99613 * 3 2 1 5 5 C 1.50698 * 109.46822 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00228 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99765 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00063 * 185.22015 * 7 5 4 9 9 C 1.53003 * 109.50276 * 298.83392 * 8 7 5 10 10 O 1.42899 * 109.47492 * 305.38302 * 9 8 7 11 11 C 1.53123 * 109.50237 * 178.76093 * 8 7 5 12 12 C 1.53125 * 109.15569 * 297.63009 * 11 8 7 13 13 C 1.53035 * 109.31152 * 302.40395 * 12 11 8 14 14 N 1.46846 * 109.51925 * 59.16593 * 13 12 11 15 15 C 1.46899 * 110.99917 * 174.15693 * 14 13 12 16 16 C 1.50697 * 109.47213 * 294.20860 * 15 14 13 17 17 O 1.21286 * 119.99978 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00181 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00310 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99721 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00456 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99582 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00243 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47217 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47545 * 119.99644 * 23 21 19 26 26 H 1.48504 * 109.47164 * 239.99563 * 23 21 19 27 27 C 1.46848 * 111.19535 * 298.25173 * 14 13 12 28 28 H 1.08003 * 119.99823 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99972 * 179.97438 * 2 1 3 31 31 H 1.08991 * 109.46900 * 4.99058 * 3 2 1 32 32 H 1.09007 * 109.46629 * 244.99410 * 3 2 1 33 33 H 1.09004 * 109.46984 * 59.99934 * 4 3 2 34 34 H 1.08997 * 109.46667 * 299.99727 * 4 3 2 35 35 H 0.97002 * 120.00213 * 5.22014 * 7 5 4 36 36 H 1.09004 * 109.46939 * 185.37980 * 9 8 7 37 37 H 1.09005 * 109.46725 * 65.38218 * 9 8 7 38 38 H 0.96695 * 113.99855 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.52340 * 57.58081 * 11 8 7 40 40 H 1.09007 * 109.52102 * 177.76615 * 11 8 7 41 41 H 1.09003 * 109.50144 * 182.44137 * 12 11 8 42 42 H 1.08996 * 109.49839 * 62.37278 * 12 11 8 43 43 H 1.08992 * 109.46404 * 299.14332 * 13 12 11 44 44 H 1.09007 * 109.45672 * 179.17146 * 13 12 11 45 45 H 1.09006 * 109.47129 * 54.20416 * 15 14 13 46 46 H 1.09003 * 109.47125 * 174.20221 * 15 14 13 47 47 H 0.97006 * 119.99871 * 359.97438 * 18 16 15 48 48 H 0.97003 * 120.00074 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.46235 * 301.72683 * 27 14 13 50 50 H 1.09001 * 109.45716 * 181.75745 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7888 2.6381 1.1812 6 8 3.5709 3.4640 0.3204 7 7 4.7052 2.8872 2.1376 8 6 5.3552 4.1983 2.2055 9 6 6.1279 4.4531 0.9098 10 8 7.0331 3.3726 0.6746 11 6 6.3227 4.2284 3.3920 12 6 5.5330 4.0335 4.6894 13 6 4.4670 5.1257 4.8018 14 7 3.5664 5.0534 3.6441 15 6 2.4491 5.9963 3.7867 16 6 1.5838 5.5781 4.9475 17 8 1.8696 4.5914 5.5922 18 7 0.4919 6.3000 5.2685 19 6 -0.2956 5.9192 6.3242 20 1 -0.0411 5.0406 6.8983 21 6 -1.4216 6.6631 6.6548 22 7 -1.7315 7.7319 5.9559 23 14 -2.4941 6.1447 8.0936 24 1 -1.9327 4.9171 8.7125 25 1 -2.5315 7.2348 9.1013 26 1 -3.8712 5.8696 7.6107 27 6 4.2943 5.2856 2.3900 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6214 1.4025 -0.9314 33 1 3.7399 0.5067 1.0922 34 1 2.4771 1.2358 2.1130 35 1 4.9344 2.1984 2.7810 36 1 6.6883 5.3839 0.9980 37 1 5.4276 4.5280 0.0779 38 1 7.5573 3.4673 -0.1324 39 1 7.0540 3.4271 3.2860 40 1 6.8358 5.1898 3.4193 41 1 6.2106 4.0973 5.5408 42 1 5.0524 3.0553 4.6793 43 1 4.9493 6.1028 4.8264 44 1 3.8936 4.9806 5.7175 45 1 2.8396 6.9979 3.9670 46 1 1.8554 5.9970 2.8725 47 1 0.2631 7.0889 4.7526 48 1 -2.5174 8.2515 6.1869 49 1 4.7773 6.2621 2.4259 50 1 3.5955 5.2567 1.5540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279470481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:20 Heat of formation + Delta-G solvation = -101.174011 kcal Electronic energy + Delta-G solvation = -31110.981421 eV Core-core repulsion = 26945.517495 eV Total energy + Delta-G solvation = -4165.463925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.59792 -38.71447 -37.77418 -36.52445 -35.34940 -34.41658 -33.72135 -32.40355 -31.32038 -31.15753 -29.86061 -27.53061 -25.79280 -24.65801 -24.55023 -22.87264 -21.62074 -20.45602 -19.81670 -19.12410 -19.06784 -17.82848 -17.45545 -17.04322 -16.10803 -15.83843 -15.55744 -15.39685 -14.92052 -14.76060 -14.59144 -14.48138 -14.11527 -13.88826 -13.81794 -13.45621 -13.21371 -13.06617 -13.06194 -12.61913 -12.39837 -12.28236 -12.09218 -11.90911 -11.74163 -11.48598 -11.37311 -11.06490 -11.05145 -11.02399 -10.79621 -10.43799 -10.37115 -10.31253 -10.23084 -10.20432 -9.49134 -9.45387 -9.23244 -8.82740 -8.37213 -7.95000 -7.78980 -6.39796 -3.80442 2.21693 2.87865 3.17161 3.27488 3.29807 3.34638 3.80907 3.93595 4.19454 4.39442 4.56548 4.77738 4.82966 4.90971 4.99835 5.07233 5.15662 5.25187 5.26536 5.26912 5.27546 5.40273 5.49324 5.53339 5.57881 5.63602 5.71916 5.76404 5.79811 5.83896 5.89656 5.96614 5.97627 6.02633 6.14625 6.17069 6.30878 6.39489 6.53993 6.57248 6.67584 6.73115 7.33576 7.43413 7.51256 7.57087 7.73277 8.08777 8.45072 8.64118 9.20222 9.57126 10.08835 10.78111 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.003398 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.466905 B = 8237.304958 C =10277.364165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.076 4.076 4 C -0.136 4.136 5 C 0.528 3.472 6 O -0.552 6.552 7 N -0.695 5.695 8 C 0.193 3.807 9 C 0.064 3.936 10 O -0.566 6.566 11 C -0.121 4.121 12 C -0.113 4.113 13 C 0.049 3.951 14 N -0.505 5.505 15 C 0.047 3.953 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.044 3.956 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.400 0.600 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.375 0.625 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.020 0.980 44 H 0.105 0.895 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.035 0.965 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.249 -8.492 -11.537 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.114 4.114 4 C -0.176 4.176 5 C 0.315 3.685 6 O -0.431 6.431 7 N -0.345 5.345 8 C 0.106 3.894 9 C -0.015 4.015 10 O -0.371 6.371 11 C -0.159 4.159 12 C -0.151 4.151 13 C -0.079 4.079 14 N -0.229 5.229 15 C -0.084 4.084 16 C 0.232 3.768 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.086 4.086 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.234 0.766 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.221 0.779 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.123 0.877 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.053 0.947 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.652 -9.108 -11.111 20.521 hybrid contribution -0.109 1.132 0.230 1.161 sum 14.543 -7.976 -10.881 19.837 Atomic orbital electron populations 1.23902 0.96049 1.01946 1.00906 1.22958 0.96086 0.98304 1.00141 1.20462 0.97814 0.95405 0.97680 1.21602 0.98884 0.95644 1.01516 1.20453 0.78776 0.88749 0.80495 1.90579 1.66274 1.48538 1.37709 1.45611 1.41594 1.14456 1.32810 1.20243 0.91298 0.84104 0.93781 1.22614 0.91837 0.88654 0.98389 1.86429 1.56598 1.46464 1.47563 1.21856 0.97315 1.02845 0.93863 1.21566 0.96824 1.00438 0.96288 1.22307 0.93715 0.95825 0.96012 1.61373 1.09235 1.51317 1.00943 1.21826 0.93285 0.93634 0.99635 1.19712 0.83752 0.86178 0.87193 1.90468 1.72753 1.28043 1.54850 1.41876 1.22590 1.26144 1.29557 1.19731 1.04446 1.11245 1.07239 0.87898 1.25253 0.97902 0.95757 0.99072 1.69625 1.27664 1.16719 1.40328 0.85816 0.79437 0.78635 0.80547 1.19244 1.20812 1.20768 1.22428 0.96567 0.95148 0.94416 0.88648 0.88366 0.87570 0.90626 0.90612 0.89379 0.88453 0.76576 0.93604 0.91024 0.77891 0.90639 0.91088 0.91483 0.90972 0.96170 0.87730 0.93644 0.89472 0.77532 0.91964 0.94690 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 14.32 29.01 0.42 -1.55 16 2 C -0.16 -1.59 9.52 -36.03 -0.34 -1.94 16 3 C -0.08 -0.87 4.95 -27.88 -0.14 -1.01 16 4 C -0.14 -1.52 5.68 -27.88 -0.16 -1.68 16 5 C 0.53 7.14 7.23 -10.99 -0.08 7.06 16 6 O -0.55 -8.81 12.29 5.56 0.07 -8.75 16 7 N -0.69 -8.55 4.42 -47.54 -0.21 -8.76 16 8 C 0.19 2.35 0.45 -131.74 -0.06 2.29 16 9 C 0.06 0.70 5.64 37.16 0.21 0.91 16 10 O -0.57 -5.68 13.02 -35.23 -0.46 -6.14 16 11 C -0.12 -1.32 4.70 -26.60 -0.13 -1.45 16 12 C -0.11 -1.42 5.91 -26.65 -0.16 -1.58 16 13 C 0.05 0.78 5.11 -3.84 -0.02 0.76 16 14 N -0.50 -8.45 4.25 -236.12 -1.00 -9.45 16 15 C 0.05 0.88 5.45 -4.98 -0.03 0.85 16 16 C 0.45 10.54 7.46 -10.99 -0.08 10.46 16 17 O -0.58 -15.22 13.90 5.55 0.08 -15.14 16 18 N -0.56 -14.41 5.29 -10.97 -0.06 -14.46 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.04 0.62 4.00 -3.84 -0.02 0.61 16 28 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 29 H 0.10 1.06 7.84 -52.49 -0.41 0.65 16 30 H 0.11 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 32 H 0.08 0.87 8.10 -51.92 -0.42 0.45 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.40 4.39 7.53 -40.82 -0.31 4.09 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.91 6.26 -51.93 -0.33 0.58 16 38 H 0.38 2.24 9.12 45.56 0.42 2.65 16 39 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 40 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.95 7.08 -51.93 -0.37 0.59 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 2.04 5.78 -51.92 -0.30 1.74 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.55 7.99 -51.93 -0.41 1.14 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 1.53 6.13 -51.93 -0.32 1.21 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -32.73 398.77 -8.02 -40.75 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -7.32 Total: 18.05 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.82 Total: 5.79 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.55 Total: -56.67 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.31 Total: -30.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.73 -8.02 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279470481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.424 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds