Wall clock time and date at job start Sat Apr 11 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47184 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 3 8 8 C 1.47124 * 121.05273 * 359.71365 * 7 5 4 9 9 C 1.52772 * 108.97048 * 232.17473 * 8 7 5 10 10 O 1.43101 * 109.41987 * 306.11511 * 9 8 7 11 11 C 1.42502 * 113.97659 * 59.83608 * 10 9 8 12 12 C 1.53459 * 113.75296 * 73.16623 * 11 10 9 13 13 N 1.48053 * 86.03723 * 91.18060 * 12 11 10 14 14 C 1.46895 * 110.99857 * 137.26819 * 13 12 11 15 15 C 1.50694 * 109.47438 * 70.55791 * 14 13 12 16 16 O 1.21285 * 120.00194 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99720 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99623 * 179.97438 * 17 15 14 19 19 H 1.08005 * 120.00267 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00063 * 179.97438 * 18 17 15 21 21 N 1.31421 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00274 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47178 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47079 * 120.00058 * 22 20 18 25 25 H 1.48498 * 109.47105 * 239.99706 * 22 20 18 26 26 C 1.48046 * 90.83225 * 24.33853 * 13 12 11 27 27 C 1.47337 * 121.05305 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 29 29 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 31 31 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 32 32 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 33 33 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 34 34 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 36 36 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 37 37 H 1.09000 * 109.59553 * 352.00557 * 8 7 5 38 38 H 1.09000 * 109.59381 * 112.46205 * 8 7 5 39 39 H 1.08998 * 109.56430 * 186.06614 * 9 8 7 40 40 H 1.09001 * 109.35742 * 66.04507 * 9 8 7 41 41 H 1.09002 * 113.77908 * 205.45375 * 12 11 10 42 42 H 1.08994 * 113.78669 * 336.89627 * 12 11 10 43 43 H 1.09004 * 109.46657 * 190.55689 * 14 13 12 44 44 H 1.09003 * 109.47033 * 310.54999 * 14 13 12 45 45 H 0.96992 * 120.00369 * 359.97438 * 17 15 14 46 46 H 0.96998 * 119.99925 * 179.97438 * 21 20 18 47 47 H 1.08997 * 113.78370 * 221.36429 * 26 13 12 48 48 H 1.09006 * 113.88203 * 89.95056 * 26 13 12 49 49 H 1.09007 * 109.74700 * 251.23857 * 27 7 5 50 50 H 1.09002 * 109.75055 * 11.91286 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1095 0.0014 8 6 6.3739 2.0090 0.0072 9 6 7.3652 2.2307 1.1483 10 8 7.9379 3.5371 1.0341 11 6 6.9840 4.5943 1.0891 12 6 6.4100 4.8366 2.4915 13 7 7.5150 5.8067 2.6642 14 6 7.0410 7.0337 3.3180 15 6 6.7208 6.7423 4.7615 16 8 6.8721 5.6225 5.2021 17 7 6.2662 7.7262 5.5627 18 6 5.9745 7.4609 6.8758 19 1 6.1092 6.4638 7.2682 20 6 5.5063 8.4753 7.7021 21 7 5.3428 9.6888 7.2247 22 14 5.1094 8.1141 9.4913 23 1 5.3765 6.6818 9.7782 24 1 5.9578 8.9616 10.3673 25 1 3.6779 8.4118 9.7506 26 6 7.6122 5.9899 1.1984 27 6 5.9140 4.4894 0.0014 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 0.8909 36 1 3.9337 0.9285 -0.8891 37 1 5.8557 1.0613 0.1538 38 1 6.9108 1.9918 -0.9412 39 1 8.1551 1.4815 1.0962 40 1 6.8439 2.1441 2.1017 41 1 5.4204 5.2938 2.4884 42 1 6.4781 3.9708 3.1500 43 1 7.8175 7.7968 3.2650 44 1 6.1444 7.3919 2.8120 45 1 6.1456 8.6218 5.2105 46 1 5.0157 10.3968 7.8014 47 1 8.6362 6.0413 0.8287 48 1 6.9794 6.7883 0.8105 49 1 6.3523 4.7186 -0.9700 50 1 5.1031 5.1863 0.2132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280889021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:25 Heat of formation + Delta-G solvation = -78.727417 kcal Electronic energy + Delta-G solvation = -30281.865588 eV Core-core repulsion = 26117.375020 eV Total energy + Delta-G solvation = -4164.490568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19800 -39.69790 -38.17198 -37.01318 -35.68117 -34.92280 -33.88706 -31.84132 -31.20520 -30.69028 -29.00277 -27.52564 -26.20055 -25.23392 -24.43043 -23.71379 -22.32285 -21.35666 -19.62766 -19.23997 -19.14420 -17.87421 -17.42625 -16.82083 -16.41753 -16.23777 -15.84690 -15.74165 -15.24225 -15.03577 -14.69711 -14.53062 -14.26646 -14.00348 -13.98571 -13.85655 -13.53191 -13.23703 -13.13001 -12.83966 -12.69394 -12.39451 -12.22505 -11.88203 -11.70718 -11.63472 -11.48679 -11.43484 -11.33681 -11.28542 -11.13632 -10.94846 -10.88322 -10.64857 -10.33187 -10.21057 -10.01062 -9.93438 -9.49801 -8.86798 -8.56049 -8.18745 -7.94478 -6.40076 -3.80751 2.40054 2.59260 3.17439 3.27726 3.35047 3.35865 3.90438 3.98692 4.13391 4.22961 4.38020 4.44351 4.49641 4.59634 4.61571 4.69162 4.87883 4.92403 4.93989 4.97655 5.12654 5.16715 5.25308 5.27094 5.32892 5.35215 5.42512 5.48790 5.50759 5.54543 5.56564 5.62944 5.65293 5.72636 5.78110 5.84802 5.88053 5.95014 6.04497 6.10542 6.16805 6.27464 6.60441 7.04568 7.08055 7.18627 7.56894 7.92447 8.07517 8.63168 9.19691 9.55895 10.07658 10.77865 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010308 B = 0.002672 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.746602 B =10475.910714 C =12272.131306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.139 4.139 5 C 0.516 3.484 6 O -0.536 6.536 7 N -0.616 5.616 8 C 0.073 3.927 9 C 0.044 3.956 10 O -0.339 6.339 11 C 0.071 3.929 12 C 0.007 3.993 13 N -0.441 5.441 14 C 0.007 3.993 15 C 0.445 3.555 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.018 3.982 27 C 0.097 3.903 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 -16.158 -20.045 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.179 4.179 5 C 0.305 3.695 6 O -0.412 6.412 7 N -0.351 5.351 8 C -0.051 4.051 9 C -0.034 4.034 10 O -0.256 6.256 11 C 0.030 3.970 12 C -0.121 4.121 13 N -0.164 5.164 14 C -0.125 4.125 15 C 0.230 3.770 16 O -0.463 6.463 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.111 4.111 27 C -0.026 4.026 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.101 0.899 49 H 0.095 0.905 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.253 -16.381 -19.264 25.318 hybrid contribution -1.136 0.796 0.383 1.440 sum -2.390 -15.585 -18.881 24.598 Atomic orbital electron populations 1.21762 0.95637 1.01541 1.02132 1.21541 0.96249 0.96477 1.01929 1.21403 0.92487 0.96747 1.03808 1.21733 0.98313 0.93659 1.04203 1.20800 0.81272 0.92028 0.75449 1.90718 1.54503 1.46617 1.49362 1.48194 1.05666 1.07081 1.74198 1.22370 0.91601 0.90511 1.00575 1.22904 0.97283 0.85747 0.97426 1.87974 1.31112 1.13035 1.93512 1.23093 0.89794 0.89553 0.94599 1.24277 0.94257 0.98748 0.94866 1.68500 1.33299 1.07879 1.06701 1.22505 0.99931 0.94096 0.95930 1.19656 0.84191 0.86198 0.86961 1.90516 1.57504 1.22414 1.75841 1.41874 1.57465 1.10637 1.10199 1.19738 1.40312 0.97601 0.85032 0.87932 1.25265 0.97428 0.94809 1.00513 1.69624 1.46506 1.01153 1.37064 0.85802 0.77927 0.78741 0.81889 1.19239 1.20723 1.20766 1.24040 1.02712 0.93023 0.91353 1.22236 0.97238 0.84015 0.99086 0.92692 0.92776 0.92520 0.92078 0.91899 0.90986 0.91219 0.88766 0.88948 0.88647 0.90336 0.87289 0.92051 0.90885 0.88634 0.88895 0.92741 0.77487 0.91936 0.88093 0.89876 0.90550 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.11 -0.91 4.50 -26.73 -0.12 -1.03 16 4 C -0.14 -1.08 4.07 -27.88 -0.11 -1.19 16 5 C 0.52 5.99 7.71 -10.99 -0.08 5.90 16 6 O -0.54 -8.39 15.48 5.56 0.09 -8.30 16 7 N -0.62 -6.46 3.03 -172.69 -0.52 -6.98 16 8 C 0.07 0.53 6.47 -3.82 -0.02 0.51 16 9 C 0.04 0.41 6.87 37.04 0.25 0.67 16 10 O -0.34 -4.39 10.52 -35.23 -0.37 -4.76 16 11 C 0.07 0.93 1.21 -90.26 -0.11 0.82 16 12 C 0.01 0.13 5.90 -2.96 -0.02 0.11 16 13 N -0.44 -7.76 5.95 -242.09 -1.44 -9.20 16 14 C 0.01 0.14 5.31 -4.98 -0.03 0.11 16 15 C 0.44 10.90 7.59 -10.99 -0.08 10.81 16 16 O -0.58 -16.20 15.13 5.55 0.08 -16.11 16 17 N -0.56 -14.74 5.29 -10.96 -0.06 -14.80 16 18 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 19 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 20 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 21 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 22 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 C 0.02 0.23 7.37 -2.98 -0.02 0.21 16 27 C 0.10 1.11 5.78 -3.62 -0.02 1.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.09 0.61 7.68 -51.93 -0.40 0.21 16 36 H 0.09 0.50 8.00 -51.93 -0.42 0.09 16 37 H 0.10 0.45 6.03 -51.93 -0.31 0.14 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.66 7.19 -51.93 -0.37 0.29 16 41 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 42 H 0.10 1.81 7.22 -51.93 -0.38 1.43 16 43 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.05 0.91 7.70 -51.93 -0.40 0.51 16 45 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.08 0.91 7.75 -51.93 -0.40 0.50 16 49 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 50 H 0.10 1.33 6.91 -51.93 -0.36 0.97 16 LS Contribution 400.17 15.07 6.03 6.03 Total: -1.00 -35.45 400.17 -9.22 -44.67 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.33 Total: 9.07 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.40 Total: 8.24 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -1.30 Total: -55.26 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.20 Total: -29.17 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.45 -9.22 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280889021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.059 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds