Wall clock time and date at job start Sat Apr 11 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00006 * 2 1 4 4 O 1.42893 * 109.47219 * 135.00165 * 3 2 1 5 5 C 1.42906 * 114.00199 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47184 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99686 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99870 * 179.97438 * 6 5 4 9 9 C 1.46491 * 120.00039 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.78621 * 328.24466 * 9 8 6 11 11 C 1.54939 * 110.72743 * 91.49273 * 9 8 6 12 12 N 1.48532 * 103.22867 * 155.76994 * 11 9 8 13 13 C 1.46897 * 111.00306 * 200.28127 * 12 11 9 14 14 C 1.50700 * 109.47122 * 287.39992 * 13 12 11 15 15 O 1.21287 * 119.99850 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99928 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99901 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99855 * 359.97438 * 17 16 14 19 19 C 1.38943 * 119.99959 * 179.97438 * 17 16 14 20 20 N 1.31420 * 120.00168 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00120 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46743 * 90.00068 * 21 19 17 23 23 H 1.48495 * 109.47219 * 210.00071 * 21 19 17 24 24 H 1.48495 * 109.47139 * 330.00163 * 21 19 17 25 25 C 1.47901 * 105.82396 * 320.79773 * 12 11 9 26 26 C 1.53997 * 107.05724 * 25.32897 * 25 12 11 27 27 C 1.52997 * 110.31228 * 117.69217 * 26 25 12 28 28 C 1.53003 * 110.30892 * 239.76383 * 26 25 12 29 29 H 1.07995 * 119.99864 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99628 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00227 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.46876 * 14.99774 * 3 2 1 33 33 H 1.09004 * 109.47207 * 255.00616 * 3 2 1 34 34 H 1.08993 * 109.47101 * 59.99530 * 5 4 3 35 35 H 1.09004 * 109.46367 * 299.99494 * 5 4 3 36 36 H 0.97002 * 119.99680 * 359.97438 * 8 6 5 37 37 H 1.09002 * 110.66320 * 37.34274 * 11 9 8 38 38 H 1.08998 * 110.81412 * 274.27723 * 11 9 8 39 39 H 1.09002 * 109.47223 * 47.39645 * 13 12 11 40 40 H 1.09001 * 109.47473 * 167.39641 * 13 12 11 41 41 H 0.96996 * 119.99806 * 359.97438 * 16 14 13 42 42 H 0.96995 * 119.99835 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.91957 * 265.97750 * 25 12 11 44 44 H 1.09004 * 110.08512 * 144.76723 * 25 12 11 45 45 H 1.09002 * 109.47153 * 61.45259 * 27 26 25 46 46 H 1.09001 * 109.46832 * 301.45450 * 27 26 25 47 47 H 1.09004 * 109.47261 * 181.45431 * 27 26 25 48 48 H 1.08998 * 109.47067 * 297.20629 * 28 26 25 49 49 H 1.08998 * 109.47394 * 57.20431 * 28 26 25 50 50 H 1.09001 * 109.46932 * 177.20952 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9078 2.4353 1.0328 6 6 4.9941 2.2568 2.0619 7 8 5.0898 1.2103 2.6673 8 7 5.8594 3.2601 2.3093 9 6 6.9151 3.0867 3.3101 10 1 6.5836 2.4266 4.1116 11 6 8.2095 2.5447 2.6534 12 7 9.2760 2.9894 3.5866 13 6 10.5863 2.9991 2.9225 14 6 11.0557 1.5819 2.7167 15 8 10.3667 0.6551 3.0872 16 7 12.2411 1.3445 2.1209 17 6 12.6683 0.0552 1.9341 18 1 12.0551 -0.7701 2.2648 19 6 13.8901 -0.1896 1.3194 20 7 14.2994 -1.4254 1.1399 21 14 14.9502 1.2379 0.7468 22 1 15.8650 1.6459 1.8431 23 1 15.7480 0.8196 -0.4338 24 1 14.0804 2.3828 0.3759 25 6 8.8913 4.3502 4.0197 26 6 7.3614 4.4541 3.8769 27 6 6.7160 4.6992 5.2423 28 6 6.9937 5.5788 2.9071 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4755 1.4868 -0.9927 34 1 3.2678 3.2694 1.3204 35 1 4.3580 2.6407 0.0616 36 1 5.7830 4.0969 1.8248 37 1 8.3537 2.9848 1.6667 38 1 8.1844 1.4569 2.5881 39 1 10.5005 3.4972 1.9567 40 1 11.3048 3.5332 3.5442 41 1 12.7918 2.0857 1.8242 42 1 15.1525 -1.5963 0.7111 43 1 9.3746 5.0926 3.3847 44 1 9.1786 4.5074 5.0594 45 1 7.0785 5.6422 5.6515 46 1 6.9770 3.8853 5.9188 47 1 5.6328 4.7446 5.1293 48 1 7.3375 6.5319 3.3089 49 1 7.4699 5.3979 1.9434 50 1 5.9118 5.6081 2.7780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282790755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:39 Heat of formation + Delta-G solvation = -73.520758 kcal Electronic energy + Delta-G solvation = -29796.511422 eV Core-core repulsion = 25632.246631 eV Total energy + Delta-G solvation = -4164.264790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.60790 -39.25882 -38.18419 -37.68908 -34.85494 -34.16663 -33.87361 -33.34143 -31.61620 -29.89153 -28.45419 -27.68247 -27.21211 -25.79790 -25.04576 -23.53097 -21.61736 -20.66083 -20.21518 -19.54141 -19.18451 -18.21194 -17.59539 -17.11415 -16.70461 -16.14932 -15.96820 -15.52266 -15.09899 -15.01565 -14.83957 -14.43048 -14.23984 -14.18469 -13.83892 -13.62413 -13.35787 -13.29140 -12.96580 -12.82730 -12.57444 -12.52559 -12.40902 -12.21915 -12.08156 -11.85036 -11.65036 -11.37296 -11.33637 -11.13167 -11.07691 -10.94613 -10.61420 -10.56636 -10.33610 -9.92998 -9.89017 -9.67955 -9.51097 -9.12544 -8.56805 -8.13317 -8.03613 -6.26033 -3.77167 1.76548 2.50324 2.64664 3.04070 3.08841 3.16743 3.69281 3.79893 4.03020 4.13871 4.25959 4.45649 4.51494 4.59582 4.65839 4.71787 4.76607 4.83742 4.87533 4.98418 5.07687 5.09113 5.11368 5.23073 5.24267 5.36227 5.41254 5.49983 5.50618 5.58826 5.60408 5.71153 5.78157 5.82279 5.89171 5.96715 6.04452 6.10999 6.21648 6.24849 6.31371 6.45003 6.70961 7.06259 7.11095 7.33414 7.63394 8.12557 8.20148 8.65796 9.01082 9.47716 9.89814 10.87322 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.002533 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.866360 B =11051.699764 C =13071.454746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.087 3.913 4 O -0.357 6.357 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.506 6.506 8 N -0.724 5.724 9 C 0.152 3.848 10 H 0.108 0.892 11 C 0.033 3.967 12 N -0.488 5.488 13 C 0.036 3.964 14 C 0.453 3.547 15 O -0.553 6.553 16 N -0.594 5.594 17 C -0.302 4.302 18 H 0.120 0.880 19 C 0.039 3.961 20 N -0.883 5.883 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.271 1.271 25 C 0.043 3.957 26 C -0.082 4.082 27 C -0.135 4.135 28 C -0.147 4.147 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.369 0.631 42 H 0.272 0.728 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.129 19.412 -1.799 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.275 6.275 5 C -0.035 4.035 6 C 0.294 3.706 7 O -0.378 6.378 8 N -0.380 5.380 9 C 0.047 3.953 10 H 0.126 0.874 11 C -0.096 4.096 12 N -0.212 5.212 13 C -0.096 4.096 14 C 0.238 3.762 15 O -0.434 6.434 16 N -0.234 5.234 17 C -0.430 4.430 18 H 0.137 0.863 19 C -0.163 4.163 20 N -0.523 5.523 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.085 4.085 26 C -0.083 4.083 27 C -0.193 4.193 28 C -0.204 4.204 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.236 0.764 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.201 0.799 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.288 17.310 -0.622 28.228 hybrid contribution 1.045 2.282 -1.791 3.084 sum -21.243 19.592 -2.413 28.999 Atomic orbital electron populations 1.23829 0.95471 1.02286 1.00225 1.22741 0.95628 0.98297 1.00013 1.21624 0.88695 0.96244 0.92408 1.88078 1.44287 1.34767 1.60399 1.22193 0.93224 0.89300 0.98798 1.20234 0.82365 0.84189 0.83775 1.90799 1.71830 1.26329 1.48880 1.46025 1.31944 1.17356 1.42652 1.21973 0.86452 0.96014 0.90891 0.87361 1.23650 0.89242 1.03483 0.93205 1.64402 1.00785 1.19875 1.36104 1.22102 0.92289 0.97324 0.97903 1.19623 0.83082 0.89846 0.83622 1.90580 1.55328 1.44924 1.52563 1.42200 1.18247 1.08141 1.54835 1.19432 1.03745 0.83286 1.36577 0.86273 1.25035 0.97027 0.96552 0.97690 1.69628 1.21500 1.18269 1.42924 0.86670 0.81142 0.82108 0.79420 1.19645 1.20266 1.19649 1.23062 0.93041 0.90631 1.01812 1.21642 0.95660 0.94463 0.96560 1.21850 1.00124 1.02100 0.95180 1.21922 1.01277 0.98159 0.99048 0.88495 0.87660 0.86224 0.92629 0.92017 0.90373 0.90188 0.76430 0.94166 0.87765 0.93212 0.89104 0.79851 0.91695 0.93520 0.89792 0.92315 0.91587 0.92642 0.91605 0.92306 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 14.31 29.01 0.42 -0.81 16 2 C -0.15 -1.27 9.89 -36.03 -0.36 -1.63 16 3 C 0.09 0.71 6.35 36.00 0.23 0.94 16 4 O -0.36 -4.29 9.86 -55.14 -0.54 -4.83 16 5 C 0.05 0.40 6.42 36.01 0.23 0.64 16 6 C 0.51 6.54 7.91 -10.99 -0.09 6.46 16 7 O -0.51 -9.37 16.15 -14.35 -0.23 -9.60 16 8 N -0.72 -7.41 4.92 -52.01 -0.26 -7.67 16 9 C 0.15 1.93 2.85 -66.07 -0.19 1.74 16 10 H 0.11 1.67 7.27 -51.93 -0.38 1.30 16 11 C 0.03 0.53 5.62 -1.90 -0.01 0.52 16 12 N -0.49 -7.89 4.90 -231.89 -1.14 -9.02 16 13 C 0.04 0.61 5.19 -4.98 -0.03 0.58 16 14 C 0.45 10.59 7.61 -10.98 -0.08 10.50 16 15 O -0.55 -15.41 14.64 5.55 0.08 -15.32 16 16 N -0.59 -14.46 5.09 -10.96 -0.06 -14.51 16 17 C -0.30 -8.72 10.16 -14.94 -0.15 -8.87 16 18 H 0.12 3.96 7.39 -52.48 -0.39 3.57 16 19 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 20 N -0.88 -26.29 13.96 55.50 0.77 -25.52 16 21 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 25 C 0.04 0.49 5.99 -2.75 -0.02 0.47 16 26 C -0.08 -0.79 0.95 -153.15 -0.15 -0.93 16 27 C -0.14 -1.16 8.22 37.16 0.31 -0.86 16 28 C -0.15 -0.98 7.05 37.16 0.26 -0.71 16 29 H 0.10 0.52 7.90 -52.49 -0.41 0.11 16 30 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.06 0.35 7.86 -51.93 -0.41 -0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.40 2.70 5.94 -40.82 -0.24 2.46 16 37 H 0.04 0.60 7.81 -51.93 -0.41 0.20 16 38 H 0.10 2.19 7.10 -51.93 -0.37 1.82 16 39 H 0.05 0.74 7.83 -51.93 -0.41 0.33 16 40 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 41 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.05 0.47 7.31 -51.93 -0.38 0.09 16 44 H 0.08 0.92 7.68 -51.93 -0.40 0.52 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.40 8.01 -51.93 -0.42 -0.02 16 50 H 0.06 0.32 6.90 -51.93 -0.36 -0.04 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -37.83 406.24 -7.87 -45.70 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.19 Total: 10.68 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 0.28 Total: 9.05 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.67 Total: -56.72 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.69 Total: -29.76 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.83 -7.87 -45.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282790755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.821 kcal (2) G-P(sol) polarization free energy of solvation -37.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds