Wall clock time and date at job start Sat Apr 11 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00006 * 2 1 4 4 O 1.42893 * 109.47219 * 135.00165 * 3 2 1 5 5 C 1.42906 * 114.00199 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47184 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99686 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99870 * 179.97438 * 6 5 4 9 9 C 1.46491 * 120.00039 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.78621 * 328.24466 * 9 8 6 11 11 C 1.54939 * 110.72743 * 91.49273 * 9 8 6 12 12 N 1.48532 * 103.22867 * 155.76994 * 11 9 8 13 13 C 1.46897 * 111.00306 * 200.28127 * 12 11 9 14 14 C 1.50700 * 109.47122 * 287.39992 * 13 12 11 15 15 O 1.21287 * 119.99850 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99928 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99901 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99855 * 359.97438 * 17 16 14 19 19 C 1.38943 * 119.99959 * 179.97438 * 17 16 14 20 20 N 1.31420 * 120.00168 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00120 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46743 * 90.00068 * 21 19 17 23 23 H 1.48495 * 109.47219 * 210.00071 * 21 19 17 24 24 H 1.48495 * 109.47139 * 330.00163 * 21 19 17 25 25 C 1.47901 * 105.82396 * 320.79773 * 12 11 9 26 26 C 1.53997 * 107.05724 * 25.32897 * 25 12 11 27 27 C 1.52997 * 110.31228 * 117.69217 * 26 25 12 28 28 C 1.53003 * 110.30892 * 239.76383 * 26 25 12 29 29 H 1.07995 * 119.99864 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99628 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00227 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.46876 * 14.99774 * 3 2 1 33 33 H 1.09004 * 109.47207 * 255.00616 * 3 2 1 34 34 H 1.08993 * 109.47101 * 59.99530 * 5 4 3 35 35 H 1.09004 * 109.46367 * 299.99494 * 5 4 3 36 36 H 0.97002 * 119.99680 * 359.97438 * 8 6 5 37 37 H 1.09002 * 110.66320 * 37.34274 * 11 9 8 38 38 H 1.08998 * 110.81412 * 274.27723 * 11 9 8 39 39 H 1.09002 * 109.47223 * 47.39645 * 13 12 11 40 40 H 1.09001 * 109.47473 * 167.39641 * 13 12 11 41 41 H 0.96996 * 119.99806 * 359.97438 * 16 14 13 42 42 H 0.96995 * 119.99835 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.91957 * 265.97750 * 25 12 11 44 44 H 1.09004 * 110.08512 * 144.76723 * 25 12 11 45 45 H 1.09002 * 109.47153 * 61.45259 * 27 26 25 46 46 H 1.09001 * 109.46832 * 301.45450 * 27 26 25 47 47 H 1.09004 * 109.47261 * 181.45431 * 27 26 25 48 48 H 1.08998 * 109.47067 * 297.20629 * 28 26 25 49 49 H 1.08998 * 109.47394 * 57.20431 * 28 26 25 50 50 H 1.09001 * 109.46932 * 177.20952 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9078 2.4353 1.0328 6 6 4.9941 2.2568 2.0619 7 8 5.0898 1.2103 2.6673 8 7 5.8594 3.2601 2.3093 9 6 6.9151 3.0867 3.3101 10 1 6.5836 2.4266 4.1116 11 6 8.2095 2.5447 2.6534 12 7 9.2760 2.9894 3.5866 13 6 10.5863 2.9991 2.9225 14 6 11.0557 1.5819 2.7167 15 8 10.3667 0.6551 3.0872 16 7 12.2411 1.3445 2.1209 17 6 12.6683 0.0552 1.9341 18 1 12.0551 -0.7701 2.2648 19 6 13.8901 -0.1896 1.3194 20 7 14.2994 -1.4254 1.1399 21 14 14.9502 1.2379 0.7468 22 1 15.8650 1.6459 1.8431 23 1 15.7480 0.8196 -0.4338 24 1 14.0804 2.3828 0.3759 25 6 8.8913 4.3502 4.0197 26 6 7.3614 4.4541 3.8769 27 6 6.7160 4.6992 5.2423 28 6 6.9937 5.5788 2.9071 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4755 1.4868 -0.9927 34 1 3.2678 3.2694 1.3204 35 1 4.3580 2.6407 0.0616 36 1 5.7830 4.0969 1.8248 37 1 8.3537 2.9848 1.6667 38 1 8.1844 1.4569 2.5881 39 1 10.5005 3.4972 1.9567 40 1 11.3048 3.5332 3.5442 41 1 12.7918 2.0857 1.8242 42 1 15.1525 -1.5963 0.7111 43 1 9.3746 5.0926 3.3847 44 1 9.1786 4.5074 5.0594 45 1 7.0785 5.6422 5.6515 46 1 6.9770 3.8853 5.9188 47 1 5.6328 4.7446 5.1293 48 1 7.3375 6.5319 3.3089 49 1 7.4699 5.3979 1.9434 50 1 5.9118 5.6081 2.7780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282790755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:38 Heat of formation + Delta-G solvation = -105.158608 kcal Electronic energy + Delta-G solvation = -29797.883342 eV Core-core repulsion = 25632.246631 eV Total energy + Delta-G solvation = -4165.636711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.63780 -40.48344 -39.69210 -38.62772 -36.24650 -35.69365 -34.78663 -34.35196 -33.75786 -30.94299 -29.55493 -28.38228 -28.17796 -26.68386 -26.44602 -24.85946 -22.81096 -21.60374 -21.28858 -20.90788 -20.42303 -19.99634 -18.47602 -17.98526 -17.70985 -17.41408 -17.10050 -16.70876 -16.40258 -16.20231 -16.17675 -15.64610 -15.39153 -15.07989 -14.98943 -14.84554 -14.51791 -14.38340 -14.24613 -14.09645 -14.01901 -13.47193 -13.27240 -13.14427 -13.10622 -13.05085 -12.74611 -12.57070 -12.46651 -12.40592 -11.98723 -11.91581 -11.86570 -11.79028 -11.57643 -11.49535 -11.03659 -10.90775 -10.42652 -10.27838 -10.25916 -10.14347 -9.31430 -8.41999 -6.03496 1.17264 1.28148 1.35376 1.43995 1.51822 1.81837 1.95759 2.22581 2.65100 3.02365 3.13308 3.31516 3.40881 3.56309 3.73441 3.88062 4.04135 4.08899 4.14725 4.15918 4.21242 4.23260 4.28230 4.32482 4.36544 4.44235 4.44923 4.58971 4.66843 4.76400 4.83461 4.84427 4.96446 4.98025 4.98646 5.08585 5.17307 5.32936 5.36652 5.47061 5.51942 5.63683 5.68439 5.83866 5.92277 6.05726 6.08250 6.51369 6.59309 6.87989 7.21864 7.38832 7.98399 8.76209 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.002533 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.866360 B =11051.699764 C =13071.454746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.183 4.183 3 C 0.085 3.915 4 O -0.402 6.402 5 C 0.048 3.952 6 C 0.501 3.499 7 O -0.578 6.578 8 N -0.701 5.701 9 C 0.157 3.843 10 H 0.068 0.932 11 C 0.038 3.962 12 N -0.521 5.521 13 C 0.049 3.951 14 C 0.447 3.553 15 O -0.611 6.611 16 N -0.591 5.591 17 C -0.329 4.329 18 H 0.048 0.952 19 C -0.020 4.020 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.229 1.229 25 C 0.043 3.957 26 C -0.070 4.070 27 C -0.133 4.133 28 C -0.144 4.144 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.421 0.579 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.474 26.041 -3.269 34.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.010 3.990 4 O -0.322 6.322 5 C -0.031 4.031 6 C 0.288 3.712 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.051 3.949 10 H 0.086 0.914 11 C -0.092 4.092 12 N -0.246 5.246 13 C -0.082 4.082 14 C 0.235 3.765 15 O -0.495 6.495 16 N -0.234 5.234 17 C -0.458 4.458 18 H 0.067 0.933 19 C -0.218 4.218 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.152 1.152 25 C -0.084 4.084 26 C -0.071 4.071 27 C -0.190 4.190 28 C -0.202 4.202 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.082 0.918 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.657 24.028 -2.111 33.093 hybrid contribution 1.040 0.051 -1.262 1.636 sum -21.616 24.079 -3.373 32.534 Atomic orbital electron populations 1.24055 0.94811 1.03608 0.97558 1.22815 0.96522 0.98167 1.02592 1.21801 0.88262 0.96562 0.92401 1.88031 1.45674 1.36688 1.61796 1.22366 0.92513 0.89591 0.98590 1.21192 0.83079 0.83297 0.83629 1.90775 1.73838 1.29264 1.51769 1.45832 1.30434 1.17763 1.41809 1.21680 0.85470 0.97621 0.90173 0.91411 1.23400 0.91582 0.99643 0.94543 1.64225 1.00397 1.23687 1.36248 1.22036 0.93347 0.92200 1.00635 1.21050 0.81838 0.92480 0.81175 1.90572 1.56786 1.47845 1.54262 1.41999 1.19081 1.06837 1.55473 1.18968 1.04209 0.83984 1.38636 0.93346 1.26207 0.98106 1.00739 0.96709 1.69826 1.22463 1.21808 1.43678 0.85293 0.78708 0.78043 0.78972 1.17939 1.19962 1.15241 1.23209 0.94348 0.88264 1.02592 1.21628 0.94446 0.93252 0.97789 1.21841 1.00608 1.02379 0.94219 1.21949 1.02688 0.97311 0.98215 0.86443 0.87004 0.88378 0.90081 0.90624 0.86081 0.87218 0.73769 0.92663 0.94553 0.89745 0.85563 0.77404 0.91140 0.90437 0.89193 0.89792 0.94001 0.91978 0.89464 0.91772 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 14.31 67.78 0.97 -1.06 16 2 C -0.18 -3.17 9.89 25.64 0.25 -2.91 16 3 C 0.09 1.30 6.35 71.24 0.45 1.75 16 4 O -0.40 -9.70 9.86 -129.94 -1.28 -10.98 16 5 C 0.05 0.79 6.42 71.24 0.46 1.25 16 6 C 0.50 13.14 7.91 87.66 0.69 13.83 16 7 O -0.58 -23.47 16.15 16.01 0.26 -23.21 16 8 N -0.70 -13.69 4.92 -436.84 -2.15 -15.83 16 9 C 0.16 4.06 2.85 46.20 0.13 4.19 16 10 H 0.07 2.32 7.27 -2.39 -0.02 2.30 16 11 C 0.04 1.26 5.62 86.65 0.49 1.75 16 12 N -0.52 -16.57 4.90 -887.56 -4.35 -20.92 16 13 C 0.05 1.56 5.19 85.56 0.44 2.01 16 14 C 0.45 21.46 7.61 87.66 0.67 22.13 16 15 O -0.61 -36.86 14.64 -3.05 -0.04 -36.91 16 16 N -0.59 -29.05 5.09 -306.98 -1.56 -30.62 16 17 C -0.33 -20.11 10.16 84.04 0.85 -19.26 16 18 H 0.05 3.56 7.39 -2.91 -0.02 3.54 16 19 C -0.02 -1.12 5.50 84.92 0.47 -0.65 16 20 N -0.94 -58.32 13.96 21.66 0.30 -58.02 16 21 Si 0.97 39.49 27.74 68.60 1.90 41.40 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 25 C 0.04 0.84 5.99 86.45 0.52 1.36 16 26 C -0.07 -1.15 0.95 -51.30 -0.05 -1.20 16 27 C -0.13 -1.99 8.22 71.98 0.59 -1.40 16 28 C -0.14 -1.17 7.05 71.98 0.51 -0.66 16 29 H 0.12 0.96 7.90 -2.91 -0.02 0.93 16 30 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.10 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.08 0.78 7.86 -2.38 -0.02 0.76 16 33 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.42 4.27 5.94 -92.71 -0.55 3.72 16 37 H 0.06 1.62 7.81 -2.39 -0.02 1.60 16 38 H 0.04 1.70 7.10 -2.39 -0.02 1.68 16 39 H 0.08 2.14 7.83 -2.39 -0.02 2.13 16 40 H 0.13 3.16 8.08 -2.39 -0.02 3.14 16 41 H 0.39 15.58 5.76 -92.71 -0.53 15.04 16 42 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.08 1.10 7.31 -2.39 -0.02 1.08 16 44 H 0.09 1.68 7.68 -2.38 -0.02 1.66 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.04 0.83 8.13 -2.39 -0.02 0.81 16 47 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.06 0.50 8.01 -2.39 -0.02 0.48 16 50 H 0.08 0.39 6.90 -2.39 -0.02 0.37 16 Total: -1.00 -98.38 406.24 0.32 -98.06 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.20 Total: 35.92 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.44 Total: 21.12 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -7.76 Total: -125.39 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -1.07 Total: -71.10 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.40 kcal Total: -98.38 0.32 -98.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282790755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.099 kcal (2) G-P(sol) polarization free energy of solvation -98.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds