Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47555 * 2 1 4 4 O 1.42901 * 109.47118 * 239.99798 * 2 1 3 5 5 C 1.53001 * 109.47025 * 120.00105 * 2 1 3 6 6 C 1.50696 * 109.47302 * 62.76066 * 5 2 1 7 7 O 1.21277 * 119.99799 * 6.19917 * 6 5 2 8 8 N 1.34775 * 120.00055 * 186.47485 * 6 5 2 9 9 C 1.46506 * 120.00206 * 179.72749 * 8 6 5 10 10 C 1.52997 * 109.47481 * 180.02562 * 9 8 6 11 11 H 1.09005 * 115.51320 * 330.57765 * 10 9 8 12 12 C 1.52996 * 117.44495 * 185.16257 * 10 9 8 13 13 H 1.08997 * 119.52846 * 4.08313 * 12 10 9 14 14 C 1.54380 * 118.13087 * 159.13026 * 12 10 9 15 15 N 1.48557 * 104.59820 * 87.22415 * 14 12 10 16 16 C 1.46894 * 111.00181 * 200.96445 * 15 14 12 17 17 C 1.50699 * 109.47145 * 170.00300 * 16 15 14 18 18 O 1.21289 * 119.99915 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00138 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00404 * 179.97438 * 19 17 16 21 21 H 1.08007 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00446 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99963 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46970 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46710 * 119.99725 * 24 22 20 27 27 H 1.48493 * 109.47124 * 239.99800 * 24 22 20 28 28 C 1.48561 * 104.22103 * 320.52095 * 15 14 12 29 29 C 1.52997 * 117.44497 * 115.99830 * 10 9 8 30 30 H 1.08989 * 119.52994 * 355.90975 * 29 10 9 31 31 H 1.08998 * 109.47388 * 300.00249 * 1 2 3 32 32 H 1.09005 * 109.46736 * 59.99829 * 1 2 3 33 33 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47702 * 180.37345 * 3 2 1 35 35 H 1.09001 * 109.47305 * 300.37359 * 3 2 1 36 36 H 1.08998 * 109.47054 * 60.37411 * 3 2 1 37 37 H 0.96692 * 113.99917 * 60.00653 * 4 2 1 38 38 H 1.09001 * 109.47353 * 302.75918 * 5 2 1 39 39 H 1.08997 * 109.47358 * 182.76354 * 5 2 1 40 40 H 0.97003 * 120.00064 * 359.71830 * 8 6 5 41 41 H 1.09004 * 109.46748 * 299.99419 * 9 8 6 42 42 H 1.08999 * 109.46951 * 59.99219 * 9 8 6 43 43 H 1.08993 * 110.41215 * 206.00997 * 14 12 10 44 44 H 1.09004 * 110.40530 * 328.44840 * 14 12 10 45 45 H 1.09004 * 109.46956 * 289.99852 * 16 15 14 46 46 H 1.08998 * 109.47343 * 49.99895 * 16 15 14 47 47 H 0.97005 * 120.00045 * 0.02562 * 19 17 16 48 48 H 0.96997 * 119.99818 * 179.97438 * 23 22 20 49 49 H 1.09001 * 110.41435 * 158.26017 * 28 15 14 50 50 H 1.08996 * 110.41145 * 280.58143 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 1.5942 -2.1604 1.2155 7 8 1.0316 -2.5981 0.2343 8 7 1.8159 -2.9596 2.2779 9 6 1.3773 -4.3572 2.2474 10 6 1.7473 -5.0367 3.5673 11 1 2.6327 -4.6427 4.0662 12 6 1.4806 -6.5386 3.6862 13 1 1.1054 -7.0876 2.8226 14 6 2.2595 -7.3337 4.7560 15 7 1.4385 -7.2077 5.9877 16 6 2.2458 -7.4667 7.1872 17 6 1.4553 -7.0938 8.4149 18 8 0.3303 -6.6551 8.3016 19 7 1.9985 -7.2479 9.6387 20 6 1.2796 -6.9083 10.7555 21 1 0.2777 -6.5176 10.6547 22 6 1.8397 -7.0666 12.0172 23 7 3.0589 -7.5415 12.1399 24 14 0.8603 -6.6031 13.5389 25 1 -0.4749 -6.0961 13.1326 26 1 0.6932 -7.7991 14.4032 27 1 1.5840 -5.5465 14.2904 28 6 0.9570 -5.8026 5.9632 29 6 0.6008 -5.5309 4.4517 30 1 -0.4293 -5.3297 4.1580 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4425 -0.0067 35 1 1.6712 1.9583 -0.8866 36 1 1.6822 1.9543 0.8933 37 1 1.7210 -0.2702 -1.9979 38 1 1.6367 -0.2368 2.1386 39 1 3.1287 -0.6786 1.2744 40 1 2.2659 -2.6095 3.0626 41 1 0.2967 -4.3959 2.1098 42 1 1.8674 -4.8738 1.4223 43 1 2.3474 -8.3798 4.4630 44 1 3.2462 -6.8971 4.9105 45 1 2.5049 -8.5247 7.2294 46 1 3.1576 -6.8707 7.1473 47 1 2.8984 -7.5985 9.7293 48 1 3.4501 -7.6517 13.0206 49 1 0.0640 -5.6959 6.5791 50 1 1.7391 -5.1266 6.3087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282858429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = -84.940295 kcal Electronic energy + Delta-G solvation = -28907.174659 eV Core-core repulsion = 24742.414680 eV Total energy + Delta-G solvation = -4164.759979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.38450 -39.83780 -38.16516 -37.78315 -35.36322 -34.09286 -33.46129 -33.00172 -31.28988 -29.57690 -28.15551 -27.91725 -27.68026 -26.04712 -24.36659 -21.86211 -21.34740 -20.81721 -20.24357 -19.97005 -19.16481 -17.86253 -17.57203 -16.72146 -16.43820 -15.96106 -15.79646 -15.49380 -15.07366 -14.91776 -14.62137 -14.48724 -14.15171 -13.81160 -13.76158 -13.56902 -13.41434 -13.28455 -12.97415 -12.74456 -12.56671 -12.35775 -12.15227 -12.12642 -11.86534 -11.75691 -11.58198 -11.41733 -11.22833 -11.19072 -10.98484 -10.96819 -10.39578 -10.36652 -10.26468 -10.10123 -10.00068 -9.72077 -9.53273 -9.17788 -8.42723 -8.05662 -7.94906 -6.45446 -3.86351 2.51002 2.88060 3.13592 3.24616 3.31637 3.54177 3.83417 3.85224 4.02029 4.20533 4.28863 4.39523 4.42126 4.58951 4.65414 4.81817 4.90659 5.00525 5.03045 5.04173 5.13325 5.14844 5.21278 5.22231 5.23729 5.37182 5.43059 5.44365 5.54295 5.62925 5.63561 5.68312 5.72156 5.77614 5.90178 5.95737 6.02970 6.12961 6.22097 6.22760 6.29439 6.62280 7.13648 7.24150 7.28368 7.43576 7.52098 8.02352 8.08911 8.57431 9.14220 9.49749 10.01155 10.72228 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.001731 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.957880 B =16174.315033 C =17141.539686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.143 3.857 3 C -0.180 4.180 4 O -0.545 6.545 5 C -0.131 4.131 6 C 0.513 3.487 7 O -0.520 6.520 8 N -0.732 5.732 9 C 0.156 3.844 10 C -0.149 4.149 11 H 0.105 0.895 12 C -0.152 4.152 13 H 0.117 0.883 14 C 0.059 3.941 15 N -0.488 5.488 16 C 0.034 3.966 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.561 5.561 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.065 3.935 29 C -0.147 4.147 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.372 0.628 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.400 0.600 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.118 0.882 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 13.416 -22.450 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.102 3.898 3 C -0.237 4.237 4 O -0.350 6.350 5 C -0.171 4.171 6 C 0.299 3.701 7 O -0.395 6.395 8 N -0.385 5.385 9 C 0.032 3.968 10 C -0.167 4.167 11 H 0.123 0.877 12 C -0.171 4.171 13 H 0.135 0.865 14 C -0.069 4.069 15 N -0.212 5.212 16 C -0.098 4.098 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.198 5.198 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.062 4.062 29 C -0.166 4.166 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.219 0.781 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.235 0.765 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.066 0.934 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.136 0.864 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.858 12.549 -22.569 25.837 hybrid contribution 0.969 1.030 0.988 1.725 sum 1.827 13.579 -21.581 25.563 Atomic orbital electron populations 1.22624 0.95413 1.04380 1.01906 1.20795 0.93089 0.90177 0.85780 1.22528 1.02184 0.96196 1.02828 1.86661 1.76423 1.56815 1.15061 1.21760 1.03537 0.93089 0.98700 1.20448 0.79209 0.87876 0.82524 1.90701 1.40921 1.75784 1.32091 1.46052 1.61846 1.11784 1.18868 1.20768 0.99876 0.80583 0.95542 1.22686 1.00631 0.96142 0.97285 0.87737 1.23314 1.03623 0.89546 1.00660 0.86527 1.22708 0.94395 1.00180 0.89641 1.65369 1.31751 1.24004 1.00072 1.22094 0.94803 1.02221 0.90643 1.19696 0.88224 0.85213 0.84151 1.90451 1.19827 1.50409 1.85837 1.41858 1.16787 1.56696 1.04429 1.19755 1.00066 1.39808 0.83231 0.87803 1.25275 0.96182 0.97197 0.99292 1.69621 1.14140 1.45463 1.24973 0.85796 0.79658 0.78105 0.80763 1.19199 1.20711 1.20772 1.23445 1.02468 0.87741 0.92571 1.24456 0.95874 1.02789 0.93509 0.86127 0.92194 0.92515 0.89897 0.91711 0.91988 0.91451 0.78124 0.87838 0.88213 0.76542 0.91224 0.91069 0.89664 0.93915 0.89007 0.93351 0.77444 0.91887 0.86359 0.94390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 8.53 37.15 0.32 -1.10 16 2 C 0.14 1.05 0.98 -90.63 -0.09 0.96 16 3 C -0.18 -0.90 8.81 37.16 0.33 -0.58 16 4 O -0.54 -5.05 11.54 -55.90 -0.64 -5.69 16 5 C -0.13 -0.93 4.97 -27.88 -0.14 -1.07 16 6 C 0.51 5.29 7.31 -10.99 -0.08 5.21 16 7 O -0.52 -7.28 13.20 -15.11 -0.20 -7.48 16 8 N -0.73 -6.47 5.56 -60.29 -0.33 -6.81 16 9 C 0.16 1.54 5.95 -4.04 -0.02 1.52 16 10 C -0.15 -1.51 5.34 -90.62 -0.48 -2.00 16 11 H 0.10 1.04 8.04 -51.93 -0.42 0.62 16 12 C -0.15 -1.74 6.76 -89.31 -0.60 -2.34 16 13 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.06 0.75 6.30 -2.18 -0.01 0.74 16 15 N -0.49 -8.16 5.34 -229.20 -1.22 -9.39 16 16 C 0.03 0.61 5.55 -4.98 -0.03 0.58 16 17 C 0.44 10.25 7.50 -10.98 -0.08 10.16 16 18 O -0.58 -15.19 13.24 5.55 0.07 -15.12 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 20 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 24 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.06 1.07 5.18 -0.37 0.00 1.06 16 29 C -0.15 -1.87 7.01 -87.49 -0.61 -2.48 16 30 H 0.12 1.47 8.12 -51.93 -0.42 1.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.87 5.98 -51.93 -0.31 0.56 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.37 2.11 9.04 45.56 0.41 2.52 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.40 2.64 8.40 -40.82 -0.34 2.30 16 41 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.52 7.82 -51.93 -0.41 0.11 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.12 2.36 6.05 -51.93 -0.31 2.04 16 50 H 0.04 0.63 7.99 -51.93 -0.42 0.21 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -33.85 403.63 -9.88 -43.72 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.52 Total: 13.70 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.75 Total: 2.79 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.89 Total: -53.78 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.77 Total: -28.29 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.85 -9.88 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282858429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.217 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds