Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47555 * 2 1 4 4 O 1.42901 * 109.47118 * 239.99798 * 2 1 3 5 5 C 1.53001 * 109.47025 * 120.00105 * 2 1 3 6 6 C 1.50696 * 109.47302 * 62.76066 * 5 2 1 7 7 O 1.21277 * 119.99799 * 6.19917 * 6 5 2 8 8 N 1.34775 * 120.00055 * 186.47485 * 6 5 2 9 9 C 1.46506 * 120.00206 * 179.72749 * 8 6 5 10 10 C 1.52997 * 109.47481 * 180.02562 * 9 8 6 11 11 H 1.09005 * 115.51320 * 330.57765 * 10 9 8 12 12 C 1.52996 * 117.44495 * 185.16257 * 10 9 8 13 13 H 1.08997 * 119.52846 * 4.08313 * 12 10 9 14 14 C 1.54380 * 118.13087 * 159.13026 * 12 10 9 15 15 N 1.48557 * 104.59820 * 87.22415 * 14 12 10 16 16 C 1.46894 * 111.00181 * 200.96445 * 15 14 12 17 17 C 1.50699 * 109.47145 * 170.00300 * 16 15 14 18 18 O 1.21289 * 119.99915 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00138 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00404 * 179.97438 * 19 17 16 21 21 H 1.08007 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00446 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99963 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46970 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46710 * 119.99725 * 24 22 20 27 27 H 1.48493 * 109.47124 * 239.99800 * 24 22 20 28 28 C 1.48561 * 104.22103 * 320.52095 * 15 14 12 29 29 C 1.52997 * 117.44497 * 115.99830 * 10 9 8 30 30 H 1.08989 * 119.52994 * 355.90975 * 29 10 9 31 31 H 1.08998 * 109.47388 * 300.00249 * 1 2 3 32 32 H 1.09005 * 109.46736 * 59.99829 * 1 2 3 33 33 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47702 * 180.37345 * 3 2 1 35 35 H 1.09001 * 109.47305 * 300.37359 * 3 2 1 36 36 H 1.08998 * 109.47054 * 60.37411 * 3 2 1 37 37 H 0.96692 * 113.99917 * 60.00653 * 4 2 1 38 38 H 1.09001 * 109.47353 * 302.75918 * 5 2 1 39 39 H 1.08997 * 109.47358 * 182.76354 * 5 2 1 40 40 H 0.97003 * 120.00064 * 359.71830 * 8 6 5 41 41 H 1.09004 * 109.46748 * 299.99419 * 9 8 6 42 42 H 1.08999 * 109.46951 * 59.99219 * 9 8 6 43 43 H 1.08993 * 110.41215 * 206.00997 * 14 12 10 44 44 H 1.09004 * 110.40530 * 328.44840 * 14 12 10 45 45 H 1.09004 * 109.46956 * 289.99852 * 16 15 14 46 46 H 1.08998 * 109.47343 * 49.99895 * 16 15 14 47 47 H 0.97005 * 120.00045 * 0.02562 * 19 17 16 48 48 H 0.96997 * 119.99818 * 179.97438 * 23 22 20 49 49 H 1.09001 * 110.41435 * 158.26017 * 28 15 14 50 50 H 1.08996 * 110.41145 * 280.58143 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 1.5942 -2.1604 1.2155 7 8 1.0316 -2.5981 0.2343 8 7 1.8159 -2.9596 2.2779 9 6 1.3773 -4.3572 2.2474 10 6 1.7473 -5.0367 3.5673 11 1 2.6327 -4.6427 4.0662 12 6 1.4806 -6.5386 3.6862 13 1 1.1054 -7.0876 2.8226 14 6 2.2595 -7.3337 4.7560 15 7 1.4385 -7.2077 5.9877 16 6 2.2458 -7.4667 7.1872 17 6 1.4553 -7.0938 8.4149 18 8 0.3303 -6.6551 8.3016 19 7 1.9985 -7.2479 9.6387 20 6 1.2796 -6.9083 10.7555 21 1 0.2777 -6.5176 10.6547 22 6 1.8397 -7.0666 12.0172 23 7 3.0589 -7.5415 12.1399 24 14 0.8603 -6.6031 13.5389 25 1 -0.4749 -6.0961 13.1326 26 1 0.6932 -7.7991 14.4032 27 1 1.5840 -5.5465 14.2904 28 6 0.9570 -5.8026 5.9632 29 6 0.6008 -5.5309 4.4517 30 1 -0.4293 -5.3297 4.1580 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4425 -0.0067 35 1 1.6712 1.9583 -0.8866 36 1 1.6822 1.9543 0.8933 37 1 1.7210 -0.2702 -1.9979 38 1 1.6367 -0.2368 2.1386 39 1 3.1287 -0.6786 1.2744 40 1 2.2659 -2.6095 3.0626 41 1 0.2967 -4.3959 2.1098 42 1 1.8674 -4.8738 1.4223 43 1 2.3474 -8.3798 4.4630 44 1 3.2462 -6.8971 4.9105 45 1 2.5049 -8.5247 7.2294 46 1 3.1576 -6.8707 7.1473 47 1 2.8984 -7.5985 9.7293 48 1 3.4501 -7.6517 13.0206 49 1 0.0640 -5.6959 6.5791 50 1 1.7391 -5.1266 6.3087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282858429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -111.753163 kcal Electronic energy + Delta-G solvation = -28908.337352 eV Core-core repulsion = 24742.414680 eV Total energy + Delta-G solvation = -4165.922672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.33536 -40.83102 -39.76626 -38.52504 -36.51089 -35.85289 -34.62192 -33.61609 -33.28739 -30.43167 -29.24314 -29.07158 -28.16751 -27.30116 -25.99209 -23.07173 -22.09020 -21.67262 -21.30922 -20.95281 -20.69138 -19.83938 -18.28461 -17.67373 -17.33927 -17.26645 -16.71259 -16.57419 -16.52375 -16.22074 -15.83880 -15.56779 -15.29741 -15.16870 -14.91009 -14.52318 -14.38572 -14.19053 -14.00271 -13.78649 -13.57651 -13.48405 -13.12900 -13.04326 -13.00001 -12.82251 -12.62945 -12.57785 -12.41528 -12.38117 -12.23519 -12.10892 -12.10128 -11.72766 -11.49868 -11.16418 -10.96417 -10.92001 -10.51869 -10.19256 -10.01953 -9.98021 -9.35173 -8.47749 -5.96301 1.35764 1.41537 1.55483 1.75432 2.02462 2.13129 2.28224 2.60965 2.84399 3.19179 3.30553 3.34241 3.43173 3.68580 3.77154 3.84627 4.01806 4.08249 4.10612 4.13795 4.22797 4.27301 4.34309 4.42681 4.48167 4.57181 4.58478 4.60582 4.65643 4.71717 4.74289 4.77044 4.90069 4.94850 4.98761 5.12126 5.17756 5.23112 5.24660 5.29697 5.40902 5.42163 5.54240 5.84360 5.89651 6.08849 6.59339 6.60661 6.97421 7.11959 7.36058 7.54182 8.10016 8.69819 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.001731 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.957880 B =16174.315033 C =17141.539686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.172 4.172 4 O -0.570 6.570 5 C -0.131 4.131 6 C 0.507 3.493 7 O -0.562 6.562 8 N -0.725 5.725 9 C 0.161 3.839 10 C -0.118 4.118 11 H 0.115 0.885 12 C -0.146 4.146 13 H 0.132 0.868 14 C 0.059 3.941 15 N -0.509 5.509 16 C 0.046 3.954 17 C 0.438 3.562 18 O -0.615 6.615 19 N -0.572 5.572 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.067 3.933 29 C -0.160 4.160 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.383 0.617 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.413 0.587 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.074 0.926 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 14.338 -22.980 27.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.096 3.904 3 C -0.230 4.230 4 O -0.377 6.377 5 C -0.170 4.170 6 C 0.295 3.705 7 O -0.440 6.440 8 N -0.379 5.379 9 C 0.037 3.963 10 C -0.137 4.137 11 H 0.133 0.867 12 C -0.165 4.165 13 H 0.150 0.850 14 C -0.068 4.068 15 N -0.234 5.234 16 C -0.085 4.085 17 C 0.226 3.774 18 O -0.501 6.501 19 N -0.209 5.209 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.060 4.060 29 C -0.179 4.179 30 H 0.139 0.861 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.250 0.750 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.075 0.925 45 H 0.129 0.871 46 H 0.089 0.911 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.269 13.474 -23.096 26.835 hybrid contribution 0.506 0.732 1.093 1.409 sum 2.775 14.206 -22.003 26.337 Atomic orbital electron populations 1.22575 0.95992 1.02481 1.02949 1.20963 0.92716 0.91424 0.85290 1.22447 1.02170 0.94511 1.03828 1.86623 1.76818 1.58016 1.16266 1.21889 1.04430 0.90910 0.99794 1.21065 0.78370 0.89124 0.81944 1.90688 1.42869 1.76759 1.33716 1.46007 1.61413 1.11273 1.19177 1.20628 0.99304 0.81261 0.95073 1.22581 0.99384 0.95365 0.96366 0.86689 1.23417 1.02586 0.90027 1.00452 0.85002 1.22796 0.94514 1.01538 0.87948 1.65343 1.32985 1.24093 1.00970 1.21975 0.94487 1.03581 0.88477 1.20713 0.88118 0.83399 0.85177 1.90452 1.21674 1.51386 1.86601 1.41919 1.16894 1.57421 1.04654 1.19692 0.99804 1.41716 0.84931 0.90289 1.26034 0.97138 0.96616 1.01461 1.69677 1.14935 1.45462 1.25988 0.84874 0.77992 0.78246 0.77241 1.19835 1.19689 1.19534 1.23191 1.00407 0.87910 0.94532 1.24244 0.96906 1.05380 0.91330 0.86066 0.90995 0.91663 0.93127 0.91603 0.91273 0.90211 0.76845 0.85259 0.86868 0.75042 0.92226 0.91259 0.88161 0.92492 0.87095 0.91140 0.76998 0.91296 0.90725 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 8.53 71.98 0.61 -2.03 16 2 C 0.14 1.82 0.98 -10.80 -0.01 1.81 16 3 C -0.17 -1.33 8.81 71.98 0.63 -0.70 16 4 O -0.57 -10.23 11.54 -129.22 -1.49 -11.72 16 5 C -0.13 -1.60 4.97 29.85 0.15 -1.45 16 6 C 0.51 9.94 7.31 87.66 0.64 10.58 16 7 O -0.56 -15.80 13.20 16.74 0.22 -15.58 16 8 N -0.73 -11.65 5.56 -463.06 -2.57 -14.22 16 9 C 0.16 2.95 5.95 86.38 0.51 3.47 16 10 C -0.12 -2.17 5.34 -10.80 -0.06 -2.22 16 11 H 0.12 1.94 8.04 -2.38 -0.02 1.92 16 12 C -0.15 -3.01 6.76 -9.94 -0.07 -3.08 16 13 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.06 1.36 6.30 86.45 0.54 1.91 16 15 N -0.51 -16.59 5.34 -879.06 -4.69 -21.29 16 16 C 0.05 1.59 5.55 85.56 0.47 2.07 16 17 C 0.44 20.73 7.50 87.66 0.66 21.39 16 18 O -0.61 -33.49 13.24 -3.06 -0.04 -33.53 16 19 N -0.57 -29.13 5.29 -306.99 -1.62 -30.75 16 20 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 23 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 24 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 C 0.07 2.23 5.18 87.63 0.45 2.68 16 29 C -0.16 -3.92 7.01 -8.77 -0.06 -3.98 16 30 H 0.12 2.95 8.12 -2.39 -0.02 2.93 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 1.09 5.98 -2.39 -0.01 1.07 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.38 4.22 9.04 -74.06 -0.67 3.55 16 38 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.41 4.50 8.40 -92.71 -0.78 3.72 16 41 H 0.06 1.25 7.93 -2.38 -0.02 1.23 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 2.04 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.18 7.82 -2.38 -0.02 1.16 16 45 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 46 H 0.07 2.14 7.88 -2.39 -0.02 2.12 16 47 H 0.40 19.16 7.90 -92.70 -0.73 18.42 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.07 3.14 6.05 -2.39 -0.01 3.13 16 50 H 0.03 1.10 7.99 -2.39 -0.02 1.08 16 Total: -1.00 -75.63 403.63 -3.33 -78.96 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -1.21 Total: 40.05 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.77 Total: 12.33 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -8.60 Total: -115.18 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -1.31 Total: -60.83 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -75.63 -3.33 -78.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282858429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.790 kcal (2) G-P(sol) polarization free energy of solvation -75.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds