Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.30737 * 2 1 4 4 C 1.54384 * 110.34154 * 237.71148 * 2 1 3 5 5 N 1.48148 * 104.62010 * 264.99765 * 4 2 1 6 6 C 1.34778 * 127.84232 * 140.43421 * 5 4 2 7 7 O 1.21289 * 119.99658 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00151 * 180.02562 * 6 5 4 9 9 H 1.08998 * 110.46045 * 57.39704 * 8 6 5 10 10 C 1.54513 * 110.50818 * 180.02562 * 8 6 5 11 11 C 1.54481 * 104.06183 * 118.64637 * 10 8 6 12 12 O 1.44430 * 104.80615 * 23.97912 * 11 10 8 13 13 C 1.44429 * 105.26910 * 319.48796 * 12 11 10 14 14 C 1.48152 * 104.32283 * 320.41948 * 5 4 2 15 15 C 1.54286 * 110.33871 * 122.17840 * 2 1 3 16 16 H 1.09007 * 110.33763 * 237.84717 * 15 2 1 17 17 N 1.46900 * 110.34224 * 359.97438 * 15 2 1 18 18 C 1.46908 * 110.99960 * 196.32573 * 17 15 2 19 19 C 1.50691 * 109.47337 * 180.02562 * 18 17 15 20 20 O 1.21300 * 120.00188 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00412 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00286 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99837 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99873 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00036 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 119.99795 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47000 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47403 * 299.99516 * 26 24 22 29 29 H 1.48500 * 109.47383 * 59.99669 * 26 24 22 30 30 H 1.08996 * 109.47598 * 304.07826 * 1 2 3 31 31 H 1.09007 * 109.46915 * 64.08018 * 1 2 3 32 32 H 1.08996 * 109.47321 * 184.07301 * 1 2 3 33 33 H 1.08989 * 109.47147 * 182.17097 * 3 2 1 34 34 H 1.09000 * 109.47056 * 302.17869 * 3 2 1 35 35 H 1.09007 * 109.47064 * 62.17197 * 3 2 1 36 36 H 1.08998 * 110.41054 * 23.78236 * 4 2 1 37 37 H 1.08998 * 110.40618 * 146.21433 * 4 2 1 38 38 H 1.09000 * 110.51030 * 237.28396 * 10 8 6 39 39 H 1.08994 * 110.51401 * 359.86006 * 10 8 6 40 40 H 1.09007 * 110.37465 * 142.80494 * 11 10 8 41 41 H 1.08998 * 110.37595 * 265.14526 * 11 10 8 42 42 H 1.09006 * 110.37266 * 281.67860 * 13 12 11 43 43 H 1.08995 * 110.36998 * 159.34405 * 13 12 11 44 44 H 1.09007 * 110.40307 * 280.79827 * 14 5 4 45 45 H 1.08997 * 110.40854 * 158.36720 * 14 5 4 46 46 H 1.00903 * 111.00223 * 320.27213 * 17 15 2 47 47 H 1.09006 * 109.46992 * 60.00101 * 18 17 15 48 48 H 1.09000 * 109.47058 * 300.00394 * 18 17 15 49 49 H 0.97006 * 119.99634 * 359.97438 * 21 19 18 50 50 H 0.96999 * 120.00191 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4348 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3139 -2.1446 -0.7206 6 6 2.0777 -3.3119 -1.3514 7 8 1.6068 -3.3127 -2.4692 8 6 2.3985 -4.6161 -0.6681 9 1 1.8660 -4.6906 0.2801 10 6 2.0435 -5.8088 -1.5840 11 6 3.3941 -6.5240 -1.8093 12 8 4.2037 -6.1504 -0.6731 13 6 3.9215 -4.7519 -0.4484 14 6 2.8801 -1.9417 0.6334 15 6 2.0663 -0.7704 1.2245 16 1 2.7080 -0.1265 1.8260 17 7 0.9523 -1.2799 2.0353 18 6 1.4112 -1.6678 3.3758 19 6 0.2438 -2.1848 4.1763 20 8 -0.8619 -2.2256 3.6793 21 7 0.4280 -2.6009 5.4449 22 6 -0.6340 -3.0717 6.1730 23 1 -1.6182 -3.1088 5.7301 24 6 -0.4439 -3.5012 7.4808 25 7 0.7539 -3.4565 8.0195 26 14 -1.8909 -4.1420 8.4730 27 1 -1.4271 -4.5336 9.8284 28 1 -2.9202 -3.0781 8.5909 29 1 -2.4760 -5.3231 7.7889 30 1 -0.3634 0.5758 0.8511 31 1 -0.3633 0.4492 -0.9244 32 1 -0.3634 -1.0250 0.0730 33 1 3.1501 1.4192 -0.0389 34 1 1.6738 1.9655 -0.8698 35 1 1.7372 1.9421 0.9089 36 1 1.3223 -0.7890 -2.0198 37 1 2.9949 -0.3257 -1.5789 38 1 1.3371 -6.4744 -1.0879 39 1 1.6337 -5.4552 -2.5300 40 1 3.2518 -7.6045 -1.8348 41 1 3.8564 -6.1794 -2.7343 42 1 4.4647 -4.1353 -1.1648 43 1 4.1843 -4.4708 0.5713 44 1 3.9354 -1.6766 0.5682 45 1 2.7493 -2.8388 1.2384 46 1 0.2060 -0.6030 2.0905 47 1 1.8409 -0.8009 3.8778 48 1 2.1664 -2.4490 3.2894 49 1 1.3122 -2.5679 5.8426 50 1 0.8866 -3.7560 8.9325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284257133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -105.451292 kcal Electronic energy + Delta-G solvation = -30966.290636 eV Core-core repulsion = 26800.641234 eV Total energy + Delta-G solvation = -4165.649402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.84823 -39.56700 -38.28346 -37.81911 -34.65040 -33.97338 -33.57487 -32.28424 -31.24896 -29.61693 -28.95791 -27.73287 -26.62269 -26.04995 -24.25211 -23.54025 -22.47528 -21.62821 -19.71524 -19.06906 -18.86989 -17.93213 -17.65650 -16.78406 -16.50344 -16.17028 -15.69528 -15.46476 -15.09762 -14.90229 -14.64738 -14.54051 -14.28143 -13.91335 -13.83066 -13.72733 -13.23297 -13.00716 -12.94695 -12.69658 -12.47029 -12.29581 -12.24161 -11.87753 -11.69781 -11.62880 -11.57672 -11.55194 -11.49731 -11.06966 -11.00772 -10.94971 -10.89198 -10.71229 -10.46431 -10.24124 -10.04776 -9.89118 -9.53074 -8.87583 -8.49477 -8.12947 -7.99442 -6.44796 -3.85710 2.49565 2.76735 3.18058 3.24210 3.28451 3.73675 3.86151 3.98984 4.13396 4.22983 4.28303 4.35565 4.57439 4.63026 4.77924 4.87493 4.96683 4.99336 5.04457 5.10188 5.11088 5.19938 5.28575 5.36739 5.39173 5.42346 5.48570 5.50997 5.52566 5.56880 5.60925 5.71666 5.77973 5.81454 5.83157 5.85878 5.88222 5.95495 5.97255 6.12075 6.24007 6.39589 6.51992 7.15272 7.41194 7.52159 7.56116 8.02602 8.03294 8.57598 9.14723 9.50567 10.01849 10.72746 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.003193 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.607685 B = 8768.157807 C =10648.039221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.139 4.139 4 C 0.117 3.883 5 N -0.610 5.610 6 C 0.550 3.450 7 O -0.543 6.543 8 C -0.143 4.143 9 H 0.116 0.884 10 C -0.147 4.147 11 C 0.045 3.955 12 O -0.371 6.371 13 C 0.061 3.939 14 C 0.104 3.896 15 C 0.078 3.922 16 H 0.061 0.939 17 N -0.659 5.659 18 C 0.047 3.953 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.284 1.284 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.357 0.643 47 H 0.044 0.956 48 H 0.084 0.916 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 4.797 -16.614 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C -0.196 4.196 4 C -0.006 4.006 5 N -0.343 5.343 6 C 0.339 3.661 7 O -0.421 6.421 8 C -0.164 4.164 9 H 0.134 0.866 10 C -0.184 4.184 11 C -0.032 4.032 12 O -0.289 6.289 13 C -0.017 4.017 14 C -0.019 4.019 15 C -0.033 4.033 16 H 0.079 0.921 17 N -0.296 5.296 18 C -0.086 4.086 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.209 1.209 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.180 0.820 47 H 0.062 0.938 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.945 3.829 -17.521 20.042 hybrid contribution -0.111 0.740 1.373 1.564 sum 8.834 4.569 -16.148 18.965 Atomic orbital electron populations 1.21780 0.92805 1.03777 1.01184 1.21622 0.97305 0.94842 0.94128 1.21879 1.00814 0.94509 1.02432 1.22414 1.00640 0.81025 0.96496 1.48733 1.62877 1.05249 1.17444 1.19838 0.77073 0.83820 0.85342 1.90667 1.45221 1.86689 1.19507 1.22674 0.98938 0.93059 1.01740 0.86571 1.22967 0.98515 0.95446 1.01511 1.23468 0.89728 1.00585 0.89383 1.89152 1.65850 1.24421 1.49507 1.23349 0.91992 0.83947 1.02386 1.22607 0.96188 1.00037 0.83103 1.22522 0.92941 0.93934 0.93938 0.92142 1.60334 1.09291 1.47215 1.12719 1.21750 0.97535 0.99969 0.89342 1.19770 0.89738 0.84952 0.83056 1.90534 1.25699 1.59951 1.70514 1.41853 1.11516 1.55807 1.10700 1.19646 0.90706 1.38358 0.94314 0.88001 1.25249 0.97764 0.97617 0.97168 1.69596 1.21275 1.47651 1.15727 0.85929 0.80672 0.79375 0.78323 1.20949 1.19926 1.19857 0.92316 0.92787 0.90394 0.92312 0.92066 0.92073 0.89801 0.91136 0.89905 0.88143 0.88752 0.92176 0.92108 0.88196 0.90720 0.89247 0.81958 0.93773 0.89806 0.77486 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.14 37.16 0.27 -1.27 16 2 C -0.08 -0.74 1.03 -153.11 -0.16 -0.89 16 3 C -0.14 -1.02 8.26 37.15 0.31 -0.71 16 4 C 0.12 1.18 6.14 -2.41 -0.01 1.16 16 5 N -0.61 -6.95 3.32 -169.31 -0.56 -7.51 16 6 C 0.55 7.31 7.13 -10.99 -0.08 7.24 16 7 O -0.54 -8.81 15.55 5.55 0.09 -8.72 16 8 C -0.14 -1.66 2.72 -90.20 -0.25 -1.90 16 9 H 0.12 1.42 7.87 -51.93 -0.41 1.01 16 10 C -0.15 -1.61 6.67 -25.16 -0.17 -1.78 16 11 C 0.05 0.45 7.63 37.93 0.29 0.74 16 12 O -0.37 -4.46 11.65 -35.23 -0.41 -4.87 16 13 C 0.06 0.63 6.36 37.93 0.24 0.87 16 14 C 0.10 1.03 5.80 -2.41 -0.01 1.01 16 15 C 0.08 0.82 3.00 -66.32 -0.20 0.62 16 16 H 0.06 0.57 7.52 -51.92 -0.39 0.18 16 17 N -0.66 -9.47 4.98 -106.51 -0.53 -10.00 16 18 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 19 C 0.44 9.88 7.82 -10.99 -0.09 9.79 16 20 O -0.58 -15.29 15.78 5.54 0.09 -15.20 16 21 N -0.56 -13.76 5.29 -10.97 -0.06 -13.82 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 26 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.06 0.65 7.06 -51.93 -0.37 0.28 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.10 7.53 -51.93 -0.39 0.71 16 33 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.96 7.60 -51.93 -0.39 0.56 16 37 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.21 6.50 -51.93 -0.34 0.87 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.59 7.86 -51.93 -0.41 0.19 16 43 H 0.10 0.90 7.64 -51.93 -0.40 0.50 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.95 5.83 -51.93 -0.30 0.65 16 46 H 0.36 5.47 5.85 -39.29 -0.23 5.24 16 47 H 0.04 0.63 8.09 -51.93 -0.42 0.21 16 48 H 0.08 1.20 7.32 -51.93 -0.38 0.82 16 49 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -32.72 394.31 -7.92 -40.65 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -8.05 Total: 13.34 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.13 Total: 7.75 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.43 Total: -54.67 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.24 Total: -28.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.72 -7.92 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284257133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.806 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds