Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.30737 * 2 1 4 4 C 1.54384 * 110.34154 * 237.71148 * 2 1 3 5 5 N 1.48148 * 104.62010 * 264.99765 * 4 2 1 6 6 C 1.34778 * 127.84232 * 140.43421 * 5 4 2 7 7 O 1.21289 * 119.99658 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00151 * 180.02562 * 6 5 4 9 9 H 1.08998 * 110.46045 * 57.39704 * 8 6 5 10 10 C 1.54513 * 110.50818 * 180.02562 * 8 6 5 11 11 C 1.54481 * 104.06183 * 118.64637 * 10 8 6 12 12 O 1.44430 * 104.80615 * 23.97912 * 11 10 8 13 13 C 1.44429 * 105.26910 * 319.48796 * 12 11 10 14 14 C 1.48152 * 104.32283 * 320.41948 * 5 4 2 15 15 C 1.54286 * 110.33871 * 122.17840 * 2 1 3 16 16 H 1.09007 * 110.33763 * 237.84717 * 15 2 1 17 17 N 1.46900 * 110.34224 * 359.97438 * 15 2 1 18 18 C 1.46908 * 110.99960 * 196.32573 * 17 15 2 19 19 C 1.50691 * 109.47337 * 180.02562 * 18 17 15 20 20 O 1.21300 * 120.00188 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00412 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00286 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99837 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99873 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00036 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 119.99795 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47000 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47403 * 299.99516 * 26 24 22 29 29 H 1.48500 * 109.47383 * 59.99669 * 26 24 22 30 30 H 1.08996 * 109.47598 * 304.07826 * 1 2 3 31 31 H 1.09007 * 109.46915 * 64.08018 * 1 2 3 32 32 H 1.08996 * 109.47321 * 184.07301 * 1 2 3 33 33 H 1.08989 * 109.47147 * 182.17097 * 3 2 1 34 34 H 1.09000 * 109.47056 * 302.17869 * 3 2 1 35 35 H 1.09007 * 109.47064 * 62.17197 * 3 2 1 36 36 H 1.08998 * 110.41054 * 23.78236 * 4 2 1 37 37 H 1.08998 * 110.40618 * 146.21433 * 4 2 1 38 38 H 1.09000 * 110.51030 * 237.28396 * 10 8 6 39 39 H 1.08994 * 110.51401 * 359.86006 * 10 8 6 40 40 H 1.09007 * 110.37465 * 142.80494 * 11 10 8 41 41 H 1.08998 * 110.37595 * 265.14526 * 11 10 8 42 42 H 1.09006 * 110.37266 * 281.67860 * 13 12 11 43 43 H 1.08995 * 110.36998 * 159.34405 * 13 12 11 44 44 H 1.09007 * 110.40307 * 280.79827 * 14 5 4 45 45 H 1.08997 * 110.40854 * 158.36720 * 14 5 4 46 46 H 1.00903 * 111.00223 * 320.27213 * 17 15 2 47 47 H 1.09006 * 109.46992 * 60.00101 * 18 17 15 48 48 H 1.09000 * 109.47058 * 300.00394 * 18 17 15 49 49 H 0.97006 * 119.99634 * 359.97438 * 21 19 18 50 50 H 0.96999 * 120.00191 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4348 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3139 -2.1446 -0.7206 6 6 2.0777 -3.3119 -1.3514 7 8 1.6068 -3.3127 -2.4692 8 6 2.3985 -4.6161 -0.6681 9 1 1.8660 -4.6906 0.2801 10 6 2.0435 -5.8088 -1.5840 11 6 3.3941 -6.5240 -1.8093 12 8 4.2037 -6.1504 -0.6731 13 6 3.9215 -4.7519 -0.4484 14 6 2.8801 -1.9417 0.6334 15 6 2.0663 -0.7704 1.2245 16 1 2.7080 -0.1265 1.8260 17 7 0.9523 -1.2799 2.0353 18 6 1.4112 -1.6678 3.3758 19 6 0.2438 -2.1848 4.1763 20 8 -0.8619 -2.2256 3.6793 21 7 0.4280 -2.6009 5.4449 22 6 -0.6340 -3.0717 6.1730 23 1 -1.6182 -3.1088 5.7301 24 6 -0.4439 -3.5012 7.4808 25 7 0.7539 -3.4565 8.0195 26 14 -1.8909 -4.1420 8.4730 27 1 -1.4271 -4.5336 9.8284 28 1 -2.9202 -3.0781 8.5909 29 1 -2.4760 -5.3231 7.7889 30 1 -0.3634 0.5758 0.8511 31 1 -0.3633 0.4492 -0.9244 32 1 -0.3634 -1.0250 0.0730 33 1 3.1501 1.4192 -0.0389 34 1 1.6738 1.9655 -0.8698 35 1 1.7372 1.9421 0.9089 36 1 1.3223 -0.7890 -2.0198 37 1 2.9949 -0.3257 -1.5789 38 1 1.3371 -6.4744 -1.0879 39 1 1.6337 -5.4552 -2.5300 40 1 3.2518 -7.6045 -1.8348 41 1 3.8564 -6.1794 -2.7343 42 1 4.4647 -4.1353 -1.1648 43 1 4.1843 -4.4708 0.5713 44 1 3.9354 -1.6766 0.5682 45 1 2.7493 -2.8388 1.2384 46 1 0.2060 -0.6030 2.0905 47 1 1.8409 -0.8009 3.8778 48 1 2.1664 -2.4490 3.2894 49 1 1.3122 -2.5679 5.8426 50 1 0.8866 -3.7560 8.9325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284257133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = -129.842677 kcal Electronic energy + Delta-G solvation = -30967.348326 eV Core-core repulsion = 26800.641234 eV Total energy + Delta-G solvation = -4166.707092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.76470 -40.53048 -39.88088 -38.92195 -36.13361 -35.44426 -34.64402 -33.24307 -33.16775 -30.44987 -29.98884 -28.68787 -27.55108 -27.29235 -25.81561 -24.42774 -23.38162 -22.54358 -21.13252 -20.32986 -19.83624 -19.74765 -18.61195 -17.93433 -17.38589 -17.32653 -16.94274 -16.56087 -16.38143 -16.12087 -15.96778 -15.73791 -15.38771 -15.34823 -14.87977 -14.82195 -14.21992 -14.16988 -13.97456 -13.64471 -13.58641 -13.45882 -13.21796 -13.16826 -13.01252 -12.75398 -12.73847 -12.48458 -12.45829 -12.42353 -12.33444 -12.13035 -11.86649 -11.80599 -11.75302 -11.51207 -11.49023 -10.92191 -10.88115 -10.30664 -9.99539 -9.78352 -9.23827 -8.45623 -5.93705 1.39612 1.41977 1.49276 1.52096 1.88878 2.08458 2.29517 2.91355 2.92839 3.22299 3.28112 3.42135 3.44393 3.63171 3.72495 3.81131 3.99186 4.03462 4.18831 4.20174 4.25150 4.32778 4.34219 4.43666 4.55824 4.57447 4.63271 4.68150 4.68318 4.71258 4.75227 4.77772 4.81274 4.83722 4.94555 4.98290 5.01664 5.07688 5.17659 5.22886 5.36491 5.41881 5.48591 5.69736 5.93409 6.16318 6.40542 6.48920 6.62459 7.04688 7.14762 7.59226 8.15115 8.71366 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.003193 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.607685 B = 8768.157807 C =10648.039221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C -0.133 4.133 4 C 0.115 3.885 5 N -0.610 5.610 6 C 0.544 3.456 7 O -0.582 6.582 8 C -0.142 4.142 9 H 0.106 0.894 10 C -0.148 4.148 11 C 0.047 3.953 12 O -0.389 6.389 13 C 0.066 3.934 14 C 0.102 3.898 15 C 0.077 3.923 16 H 0.087 0.913 17 N -0.676 5.676 18 C 0.063 3.937 19 C 0.437 3.563 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.076 0.924 24 C -0.010 4.010 25 N -0.918 5.918 26 Si 0.988 3.012 27 H -0.270 1.270 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.349 0.651 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.899 5.748 -16.353 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C -0.190 4.190 4 C -0.008 4.008 5 N -0.341 5.341 6 C 0.333 3.667 7 O -0.463 6.463 8 C -0.163 4.163 9 H 0.125 0.875 10 C -0.186 4.186 11 C -0.029 4.029 12 O -0.307 6.307 13 C -0.011 4.011 14 C -0.021 4.021 15 C -0.033 4.033 16 H 0.105 0.895 17 N -0.312 5.312 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.094 0.906 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.812 3.188 27 H -0.194 1.194 28 H -0.198 1.198 29 H -0.200 1.200 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.100 0.900 46 H 0.171 0.829 47 H 0.089 0.911 48 H 0.124 0.876 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.160 4.805 -17.242 21.094 hybrid contribution -0.830 0.489 1.228 1.561 sum 10.330 5.293 -16.014 19.778 Atomic orbital electron populations 1.21706 0.94564 1.01366 1.01511 1.21585 0.95771 0.96336 0.93381 1.21845 1.01974 0.92395 1.02817 1.22561 1.01441 0.80547 0.96220 1.48824 1.61999 1.05284 1.18040 1.20104 0.76730 0.84780 0.85048 1.90642 1.47118 1.87305 1.21223 1.22653 1.00094 0.92529 1.01036 0.87548 1.22957 0.99342 0.95504 1.00793 1.23556 0.88705 1.01489 0.89193 1.89129 1.66190 1.25254 1.50170 1.23415 0.90710 0.83470 1.03552 1.22837 0.97870 0.99530 0.81876 1.22685 0.92092 0.94665 0.93872 0.89500 1.60333 1.10697 1.47989 1.12143 1.21605 0.94630 1.01342 0.89351 1.20965 0.91055 0.82979 0.82546 1.90507 1.28248 1.61159 1.71288 1.41912 1.11061 1.56525 1.11485 1.19584 0.90749 1.40534 0.95502 0.90607 1.25950 1.00248 0.97266 0.97492 1.69648 1.22406 1.47698 1.16156 0.85064 0.77809 0.78594 0.77339 1.19442 1.19787 1.19962 0.92504 0.91976 0.94054 0.90335 0.91381 0.92061 0.91723 0.88427 0.89792 0.89481 0.87114 0.91424 0.91294 0.86634 0.87010 0.90006 0.82873 0.91134 0.87567 0.76907 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 7.14 71.98 0.51 -2.45 16 2 C -0.07 -1.17 1.03 -51.28 -0.05 -1.22 16 3 C -0.13 -1.48 8.26 71.98 0.59 -0.89 16 4 C 0.11 2.10 6.14 86.53 0.53 2.63 16 5 N -0.61 -13.05 3.32 -807.95 -2.68 -15.73 16 6 C 0.54 14.40 7.13 87.65 0.62 15.02 16 7 O -0.58 -19.37 15.55 -3.06 -0.05 -19.42 16 8 C -0.14 -3.26 2.72 -10.52 -0.03 -3.29 16 9 H 0.11 2.63 7.87 -2.39 -0.02 2.61 16 10 C -0.15 -3.29 6.67 31.61 0.21 -3.08 16 11 C 0.05 0.89 7.63 72.49 0.55 1.45 16 12 O -0.39 -8.80 11.65 -148.98 -1.74 -10.54 16 13 C 0.07 1.25 6.36 72.48 0.46 1.71 16 14 C 0.10 1.70 5.80 86.53 0.50 2.20 16 15 C 0.08 1.40 3.00 45.82 0.14 1.54 16 16 H 0.09 1.21 7.52 -2.38 -0.02 1.19 16 17 N -0.68 -18.61 4.98 -490.88 -2.45 -21.06 16 18 C 0.06 1.89 5.96 85.55 0.51 2.40 16 19 C 0.44 19.76 7.82 87.65 0.69 20.44 16 20 O -0.63 -33.78 15.78 -3.09 -0.05 -33.83 16 21 N -0.57 -28.30 5.29 -306.99 -1.62 -29.92 16 22 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 23 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 24 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 25 N -0.92 -48.53 13.05 21.66 0.28 -48.24 16 26 Si 0.99 42.55 29.55 68.60 2.03 44.57 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 H 0.06 1.26 7.06 -2.39 -0.02 1.24 16 31 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.04 1.21 7.53 -2.39 -0.02 1.19 16 33 H 0.08 0.61 8.10 -2.39 -0.02 0.59 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.06 1.45 7.60 -2.39 -0.02 1.44 16 37 H 0.10 1.30 7.84 -2.39 -0.02 1.28 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 2.19 6.50 -2.39 -0.02 2.17 16 40 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.21 7.86 -2.38 -0.02 1.19 16 43 H 0.12 1.80 7.64 -2.39 -0.02 1.78 16 44 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.08 1.53 5.83 -2.39 -0.01 1.52 16 46 H 0.35 10.60 5.85 -89.69 -0.52 10.08 16 47 H 0.07 1.79 8.09 -2.38 -0.02 1.77 16 48 H 0.11 2.76 7.32 -2.39 -0.02 2.74 16 49 H 0.40 18.47 7.90 -92.70 -0.73 17.73 16 50 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -73.36 394.31 -0.04 -73.40 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.29 Total: 42.20 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.52 Total: 18.58 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -6.46 Total: -114.95 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: -1.83 Total: -63.80 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -73.36 -0.04 -73.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284257133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.445 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds