Wall clock time and date at job start Sat Apr 11 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34634 * 117.00138 * 2 1 4 4 O 1.21509 * 119.99719 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99954 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99797 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47107 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00484 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00651 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.92451 * 23.67700 * 10 9 7 12 12 C 1.54145 * 113.64212 * 252.35061 * 10 9 7 13 13 H 1.08995 * 114.73694 * 26.75202 * 12 10 9 14 14 C 1.53075 * 111.69228 * 157.46848 * 12 10 9 15 15 C 1.53022 * 109.42266 * 146.38416 * 14 12 10 16 16 C 1.52939 * 108.93096 * 295.36798 * 15 14 12 17 17 N 1.45891 * 109.88685 * 57.34455 * 16 15 14 18 18 C 1.36939 * 118.48027 * 140.65630 * 17 16 15 19 19 H 1.08006 * 119.99992 * 142.25435 * 18 17 16 20 20 C 1.38814 * 120.00323 * 322.24622 * 18 17 16 21 21 N 1.31618 * 120.00062 * 155.76666 * 20 18 17 22 22 Si 1.86796 * 119.99964 * 335.77660 * 20 18 17 23 23 H 1.48497 * 109.47356 * 85.03615 * 22 20 18 24 24 H 1.48499 * 109.47280 * 205.03946 * 22 20 18 25 25 H 1.48502 * 109.47171 * 325.03772 * 22 20 18 26 26 C 1.45085 * 123.03678 * 320.63833 * 17 16 15 27 27 H 1.09001 * 112.26239 * 155.81440 * 26 17 16 28 28 C 1.53397 * 114.62458 * 286.26365 * 26 17 16 29 29 C 1.52998 * 113.68250 * 257.75052 * 28 26 17 30 30 C 1.52993 * 113.68689 * 28.78792 * 28 26 17 31 31 H 1.08997 * 109.47040 * 299.99889 * 1 2 3 32 32 H 1.08998 * 109.46724 * 59.99788 * 1 2 3 33 33 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 34 34 H 0.96991 * 119.99836 * 359.97438 * 5 3 2 35 35 H 1.09003 * 109.46922 * 59.99838 * 6 5 3 36 36 H 1.08996 * 109.47178 * 300.00176 * 6 5 3 37 37 H 0.97005 * 119.99657 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.46265 * 26.39905 * 14 12 10 39 39 H 1.09003 * 109.48675 * 266.37746 * 14 12 10 40 40 H 1.08998 * 109.55782 * 175.53685 * 15 14 12 41 41 H 1.08994 * 109.56090 * 55.20425 * 15 14 12 42 42 H 1.09005 * 109.40100 * 297.21994 * 16 15 14 43 43 H 1.08994 * 109.33152 * 177.43259 * 16 15 14 44 44 H 0.97001 * 119.99990 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.46942 * 60.00676 * 29 28 26 46 46 H 1.09000 * 109.47524 * 300.00032 * 29 28 26 47 47 H 1.09001 * 109.46910 * 179.97438 * 29 28 26 48 48 H 1.08996 * 109.47729 * 265.97949 * 30 28 26 49 49 H 1.09007 * 109.47316 * 25.97934 * 30 28 26 50 50 H 1.09004 * 109.47050 * 145.97269 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0743 2.5754 -0.0011 7 6 5.5683 2.3779 -0.0010 8 8 6.0319 1.2572 -0.0009 9 7 6.3894 3.4467 -0.0009 10 6 7.8417 3.2548 -0.0002 11 1 8.1424 2.2875 -0.4030 12 6 8.5101 3.5986 1.3456 13 1 7.8633 3.4921 2.2164 14 6 9.8597 2.8938 1.5035 15 6 10.8131 3.7916 2.2951 16 6 11.0929 5.0566 1.4825 17 7 9.8394 5.7378 1.1773 18 6 9.8097 7.1058 1.2312 19 1 9.2319 7.6624 0.5081 20 6 10.5221 7.7774 2.2153 21 7 10.8981 9.0236 2.0210 22 14 10.9473 6.9122 3.8153 23 1 12.2003 6.1348 3.6399 24 1 11.1367 7.9210 4.8884 25 1 9.8428 5.9928 4.1896 26 6 8.6231 5.0329 0.8188 27 1 7.7285 5.6174 1.0338 28 6 8.6211 4.4403 -0.5960 29 6 7.8150 5.2609 -1.6049 30 6 10.0137 4.0680 -1.1084 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.9375 0.4566 -0.0005 35 1 3.7818 3.1326 0.8889 36 1 3.7811 3.1322 -0.8910 37 1 6.0186 4.3431 -0.0006 38 1 10.2822 2.6936 0.5189 39 1 9.7188 1.9536 2.0367 40 1 11.7474 3.2607 2.4773 41 1 10.3541 4.0626 3.2459 42 1 11.5939 4.7864 0.5529 43 1 11.7352 5.7216 2.0599 44 1 11.3962 9.4928 2.7086 45 1 8.2341 6.2648 -1.6741 46 1 6.7773 5.3221 -1.2771 47 1 7.8600 4.7807 -2.5824 48 1 10.4221 4.8971 -1.6861 49 1 10.6680 3.8577 -0.2623 50 1 9.9434 3.1836 -1.7418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316719193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:18 Heat of formation + Delta-G solvation = -46.214893 kcal Electronic energy + Delta-G solvation = -31129.041105 eV Core-core repulsion = 26965.960385 eV Total energy + Delta-G solvation = -4163.080719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.25149 -40.71809 -39.32912 -36.92970 -35.73286 -34.82751 -33.42713 -32.88514 -31.06405 -30.18133 -29.07330 -27.31383 -27.02583 -25.48478 -24.75475 -22.51019 -21.89597 -21.37349 -20.76790 -19.65092 -19.34202 -17.81826 -17.25306 -17.12323 -16.95502 -16.66229 -16.19193 -15.67634 -15.62327 -15.02870 -14.51633 -14.37355 -14.16856 -13.89059 -13.80882 -13.44416 -13.43142 -13.06219 -12.77644 -12.70321 -12.42456 -12.38421 -12.18534 -11.98363 -11.83131 -11.66656 -11.43894 -11.09930 -10.99982 -10.97398 -10.77801 -10.58673 -10.51730 -10.15852 -10.10826 -9.96717 -9.65179 -9.59608 -9.51127 -9.25983 -8.86300 -8.44096 -6.76686 -6.06326 -3.46765 1.74782 2.33737 2.50867 3.01378 3.26782 3.43804 3.47650 3.96257 4.41501 4.46945 4.72945 4.81225 4.83822 4.88938 4.94220 4.97110 4.99779 5.12205 5.16094 5.26986 5.32659 5.46690 5.57980 5.68341 5.72958 5.80770 5.88489 5.91161 5.97958 6.02209 6.08877 6.14116 6.20891 6.31174 6.32745 6.33340 6.37981 6.51118 6.57139 6.66872 6.74719 6.79906 6.92473 7.04276 7.05520 7.35585 7.97019 7.99935 8.02855 8.36446 8.99562 9.68010 10.05164 11.08730 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002611 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.026194 B =10720.472533 C =10914.854499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.573 6.573 5 N -0.697 5.697 6 C 0.117 3.883 7 C 0.511 3.489 8 O -0.539 6.539 9 N -0.697 5.697 10 C 0.127 3.873 11 H 0.100 0.900 12 C -0.136 4.136 13 H 0.073 0.927 14 C -0.105 4.105 15 C -0.143 4.143 16 C 0.126 3.874 17 N -0.580 5.580 18 C -0.277 4.277 19 H 0.079 0.921 20 C 0.038 3.962 21 N -0.896 5.896 22 Si 0.875 3.125 23 H -0.280 1.280 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.186 3.814 27 H 0.080 0.920 28 C -0.112 4.112 29 C -0.128 4.128 30 C -0.138 4.138 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.419 0.581 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.406 0.594 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.067 0.933 44 H 0.263 0.737 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.836 -15.985 -5.044 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.462 6.462 5 N -0.359 5.359 6 C -0.010 4.010 7 C 0.296 3.704 8 O -0.416 6.416 9 N -0.348 5.348 10 C 0.021 3.979 11 H 0.117 0.883 12 C -0.158 4.158 13 H 0.091 0.909 14 C -0.143 4.143 15 C -0.182 4.182 16 C 0.002 3.998 17 N -0.299 5.299 18 C -0.405 4.405 19 H 0.096 0.904 20 C -0.163 4.163 21 N -0.536 5.536 22 Si 0.705 3.295 23 H -0.208 1.208 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.077 3.923 27 H 0.098 0.902 28 C -0.116 4.116 29 C -0.186 4.186 30 C -0.195 4.195 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.258 0.742 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.243 0.757 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.798 -16.132 -4.968 21.183 hybrid contribution 0.079 -0.165 1.067 1.083 sum -12.719 -16.297 -3.901 21.038 Atomic orbital electron populations 1.23225 0.74121 1.03577 1.02856 1.86252 1.24356 1.30770 1.87012 1.17964 0.83058 0.82313 0.76394 1.91021 1.64658 1.34803 1.55714 1.44180 1.03258 1.10436 1.78049 1.21040 0.89493 0.84874 1.05578 1.20302 0.88333 0.85339 0.76427 1.90706 1.77220 1.23672 1.50030 1.45655 1.06701 1.08908 1.73539 1.22307 0.77779 0.99844 0.97923 0.88254 1.23319 0.96669 0.99246 0.96542 0.90867 1.21521 0.94239 0.97274 1.01247 1.21950 0.98696 0.97767 0.99777 1.21269 0.89053 0.92567 0.96901 1.43425 1.03631 1.03313 1.79548 1.18820 1.31266 0.80052 1.10384 0.90351 1.25511 0.98148 0.94974 0.97701 1.69898 1.37813 1.11921 1.33960 0.87170 0.78519 0.78580 0.85225 1.20784 1.23235 1.19541 1.21407 0.90558 0.89741 0.90641 0.90168 1.22940 0.95285 0.94801 0.98551 1.21607 0.98535 1.00618 0.97795 1.22044 0.95493 1.00113 1.01801 0.91720 0.91741 0.87870 0.74240 0.87733 0.87781 0.75744 0.90156 0.92867 0.92157 0.92105 0.94800 0.91540 0.92671 0.91601 0.93601 0.93582 0.92179 0.89112 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.70 10.62 -40.31 -0.43 -4.12 16 3 C 0.65 7.55 8.75 54.06 0.47 8.02 16 4 O -0.57 -8.01 16.13 -19.28 -0.31 -8.33 16 5 N -0.70 -7.24 5.53 -66.47 -0.37 -7.60 16 6 C 0.12 1.09 6.15 -5.20 -0.03 1.06 16 7 C 0.51 5.87 7.90 -10.99 -0.09 5.78 16 8 O -0.54 -7.84 15.27 5.55 0.08 -7.75 16 9 N -0.70 -7.92 4.67 -52.79 -0.25 -8.17 16 10 C 0.13 1.74 3.34 -66.89 -0.22 1.51 16 11 H 0.10 1.45 7.35 -51.93 -0.38 1.07 16 12 C -0.14 -2.14 4.12 -89.87 -0.37 -2.51 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.11 -1.60 5.18 -26.68 -0.14 -1.74 16 15 C -0.14 -2.49 5.70 -26.75 -0.15 -2.64 16 16 C 0.13 2.57 4.46 -4.40 -0.02 2.55 16 17 N -0.58 -12.51 2.24 -166.86 -0.37 -12.88 16 18 C -0.28 -7.20 9.74 -15.06 -0.15 -7.35 16 19 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 20 C 0.04 1.04 5.15 -17.43 -0.09 0.95 16 21 N -0.90 -26.30 13.97 55.49 0.78 -25.53 16 22 Si 0.87 21.37 24.34 -169.99 -4.14 17.23 16 23 H -0.28 -6.55 6.25 56.52 0.35 -6.20 16 24 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 25 H -0.27 -6.54 6.70 56.52 0.38 -6.16 16 26 C 0.19 3.30 3.34 -68.38 -0.23 3.07 16 27 H 0.08 1.45 7.88 -51.93 -0.41 1.05 16 28 C -0.11 -1.66 1.34 -153.85 -0.21 -1.86 16 29 C -0.13 -1.74 8.97 37.16 0.33 -1.41 16 30 C -0.14 -2.07 7.36 37.15 0.27 -1.79 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.42 4.28 7.55 -40.82 -0.31 3.97 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.41 3.92 6.80 -40.82 -0.28 3.64 16 38 H 0.08 1.15 4.69 -51.93 -0.24 0.91 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 42 H 0.03 0.66 5.84 -51.93 -0.30 0.35 16 43 H 0.07 1.52 3.54 -51.93 -0.18 1.34 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.53 5.91 -51.93 -0.31 0.22 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 49 H 0.09 1.43 1.95 -51.92 -0.10 1.33 16 50 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -32.21 377.05 -6.43 -38.64 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.56 Total: 7.73 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 0.45 Total: 5.10 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.21 Total: -54.18 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.65 Total: -20.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.21 -6.43 -38.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316719193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.576 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds