Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34634 * 117.00138 * 2 1 4 4 O 1.21509 * 119.99719 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99954 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99797 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47107 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00484 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00651 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.92451 * 23.67700 * 10 9 7 12 12 C 1.54145 * 113.64212 * 252.35061 * 10 9 7 13 13 H 1.08995 * 114.73694 * 26.75202 * 12 10 9 14 14 C 1.53075 * 111.69228 * 157.46848 * 12 10 9 15 15 C 1.53022 * 109.42266 * 146.38416 * 14 12 10 16 16 C 1.52939 * 108.93096 * 295.36798 * 15 14 12 17 17 N 1.45891 * 109.88685 * 57.34455 * 16 15 14 18 18 C 1.36939 * 118.48027 * 140.65630 * 17 16 15 19 19 H 1.08006 * 119.99992 * 142.25435 * 18 17 16 20 20 C 1.38814 * 120.00323 * 322.24622 * 18 17 16 21 21 N 1.31618 * 120.00062 * 155.76666 * 20 18 17 22 22 Si 1.86796 * 119.99964 * 335.77660 * 20 18 17 23 23 H 1.48497 * 109.47356 * 85.03615 * 22 20 18 24 24 H 1.48499 * 109.47280 * 205.03946 * 22 20 18 25 25 H 1.48502 * 109.47171 * 325.03772 * 22 20 18 26 26 C 1.45085 * 123.03678 * 320.63833 * 17 16 15 27 27 H 1.09001 * 112.26239 * 155.81440 * 26 17 16 28 28 C 1.53397 * 114.62458 * 286.26365 * 26 17 16 29 29 C 1.52998 * 113.68250 * 257.75052 * 28 26 17 30 30 C 1.52993 * 113.68689 * 28.78792 * 28 26 17 31 31 H 1.08997 * 109.47040 * 299.99889 * 1 2 3 32 32 H 1.08998 * 109.46724 * 59.99788 * 1 2 3 33 33 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 34 34 H 0.96991 * 119.99836 * 359.97438 * 5 3 2 35 35 H 1.09003 * 109.46922 * 59.99838 * 6 5 3 36 36 H 1.08996 * 109.47178 * 300.00176 * 6 5 3 37 37 H 0.97005 * 119.99657 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.46265 * 26.39905 * 14 12 10 39 39 H 1.09003 * 109.48675 * 266.37746 * 14 12 10 40 40 H 1.08998 * 109.55782 * 175.53685 * 15 14 12 41 41 H 1.08994 * 109.56090 * 55.20425 * 15 14 12 42 42 H 1.09005 * 109.40100 * 297.21994 * 16 15 14 43 43 H 1.08994 * 109.33152 * 177.43259 * 16 15 14 44 44 H 0.97001 * 119.99990 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.46942 * 60.00676 * 29 28 26 46 46 H 1.09000 * 109.47524 * 300.00032 * 29 28 26 47 47 H 1.09001 * 109.46910 * 179.97438 * 29 28 26 48 48 H 1.08996 * 109.47729 * 265.97949 * 30 28 26 49 49 H 1.09007 * 109.47316 * 25.97934 * 30 28 26 50 50 H 1.09004 * 109.47050 * 145.97269 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0743 2.5754 -0.0011 7 6 5.5683 2.3779 -0.0010 8 8 6.0319 1.2572 -0.0009 9 7 6.3894 3.4467 -0.0009 10 6 7.8417 3.2548 -0.0002 11 1 8.1424 2.2875 -0.4030 12 6 8.5101 3.5986 1.3456 13 1 7.8633 3.4921 2.2164 14 6 9.8597 2.8938 1.5035 15 6 10.8131 3.7916 2.2951 16 6 11.0929 5.0566 1.4825 17 7 9.8394 5.7378 1.1773 18 6 9.8097 7.1058 1.2312 19 1 9.2319 7.6624 0.5081 20 6 10.5221 7.7774 2.2153 21 7 10.8981 9.0236 2.0210 22 14 10.9473 6.9122 3.8153 23 1 12.2003 6.1348 3.6399 24 1 11.1367 7.9210 4.8884 25 1 9.8428 5.9928 4.1896 26 6 8.6231 5.0329 0.8188 27 1 7.7285 5.6174 1.0338 28 6 8.6211 4.4403 -0.5960 29 6 7.8150 5.2609 -1.6049 30 6 10.0137 4.0680 -1.1084 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.9375 0.4566 -0.0005 35 1 3.7818 3.1326 0.8889 36 1 3.7811 3.1322 -0.8910 37 1 6.0186 4.3431 -0.0006 38 1 10.2822 2.6936 0.5189 39 1 9.7188 1.9536 2.0367 40 1 11.7474 3.2607 2.4773 41 1 10.3541 4.0626 3.2459 42 1 11.5939 4.7864 0.5529 43 1 11.7352 5.7216 2.0599 44 1 11.3962 9.4928 2.7086 45 1 8.2341 6.2648 -1.6741 46 1 6.7773 5.3221 -1.2771 47 1 7.8600 4.7807 -2.5824 48 1 10.4221 4.8971 -1.6861 49 1 10.6680 3.8577 -0.2623 50 1 9.9434 3.1836 -1.7418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316719193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -70.233803 kcal Electronic energy + Delta-G solvation = -31130.082643 eV Core-core repulsion = 26965.960385 eV Total energy + Delta-G solvation = -4164.122257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.46616 -41.58670 -40.34835 -37.74965 -37.15457 -35.72131 -34.91675 -34.15577 -32.89745 -31.47134 -29.87599 -28.31986 -27.90915 -27.09406 -26.14465 -24.01919 -23.08173 -22.44670 -21.70676 -20.88210 -20.24368 -19.10036 -18.97229 -18.11031 -17.74517 -17.67670 -17.49332 -17.08230 -16.55990 -16.12608 -15.81323 -15.61918 -15.37095 -15.07223 -14.91036 -14.72819 -14.48236 -14.39715 -14.14250 -13.79616 -13.77262 -13.54658 -13.44652 -13.21323 -12.97191 -12.95899 -12.90330 -12.48568 -12.25414 -12.11725 -11.95667 -11.88321 -11.81217 -11.75212 -11.49992 -11.21630 -11.07408 -11.03718 -10.65620 -10.45979 -10.41636 -9.92774 -8.54070 -8.18256 -5.52944 0.99486 1.31026 1.41982 1.42783 1.51088 1.64107 2.09682 2.43107 3.06152 3.23799 3.43020 3.51692 3.54943 3.67376 3.92583 3.95842 4.16034 4.26201 4.28104 4.36097 4.36616 4.38827 4.42842 4.44848 4.64386 4.66410 4.70114 4.78048 4.81661 4.89144 4.92997 4.97384 5.00999 5.05217 5.09141 5.19091 5.21334 5.26067 5.30022 5.37588 5.39547 5.52364 5.65367 5.71558 6.00272 6.22882 6.25492 6.42451 7.06256 7.09184 7.16587 7.74933 8.10559 9.00982 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002611 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.026194 B =10720.472533 C =10914.854499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.649 3.351 4 O -0.601 6.601 5 N -0.693 5.693 6 C 0.120 3.880 7 C 0.519 3.481 8 O -0.566 6.566 9 N -0.693 5.693 10 C 0.148 3.852 11 H 0.103 0.897 12 C -0.133 4.133 13 H 0.069 0.931 14 C -0.102 4.102 15 C -0.139 4.139 16 C 0.121 3.879 17 N -0.589 5.589 18 C -0.255 4.255 19 H 0.045 0.955 20 C -0.018 4.018 21 N -0.946 5.946 22 Si 0.934 3.066 23 H -0.264 1.264 24 H -0.318 1.318 25 H -0.266 1.266 26 C 0.167 3.833 27 H 0.070 0.930 28 C -0.104 4.104 29 C -0.126 4.126 30 C -0.137 4.137 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.420 0.580 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.415 0.585 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.260 0.740 45 H 0.037 0.963 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.042 0.958 49 H 0.085 0.915 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -19.170 -5.357 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.402 3.598 4 O -0.492 6.492 5 N -0.356 5.356 6 C -0.006 4.006 7 C 0.305 3.695 8 O -0.445 6.445 9 N -0.344 5.344 10 C 0.042 3.958 11 H 0.121 0.879 12 C -0.155 4.155 13 H 0.088 0.912 14 C -0.139 4.139 15 C -0.177 4.177 16 C -0.003 4.003 17 N -0.310 5.310 18 C -0.385 4.385 19 H 0.063 0.937 20 C -0.215 4.215 21 N -0.590 5.590 22 Si 0.763 3.237 23 H -0.190 1.190 24 H -0.247 1.247 25 H -0.191 1.191 26 C 0.059 3.941 27 H 0.088 0.912 28 C -0.108 4.108 29 C -0.183 4.183 30 C -0.194 4.194 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.259 0.741 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.253 0.747 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.103 0.897 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.831 -19.375 -5.295 24.387 hybrid contribution 0.314 0.798 1.061 1.364 sum -13.516 -18.578 -4.235 23.361 Atomic orbital electron populations 1.23541 0.72427 1.05729 1.02792 1.86265 1.26046 1.29868 1.86658 1.18084 0.83232 0.82412 0.76041 1.91000 1.65273 1.35778 1.57171 1.44212 1.02992 1.10849 1.77521 1.21101 0.87737 0.84786 1.06976 1.20529 0.88986 0.84636 0.75303 1.90702 1.77832 1.24729 1.51241 1.45572 1.05838 1.09589 1.73412 1.21978 0.78793 0.99105 0.95963 0.87905 1.23294 0.97497 0.97239 0.97427 0.91220 1.21533 0.93158 0.97349 1.01882 1.21909 1.00480 0.96762 0.98545 1.21320 0.88078 0.93244 0.97610 1.43484 1.05580 1.01855 1.80050 1.18733 1.28960 0.82277 1.08543 0.93726 1.26060 0.99347 0.95555 1.00526 1.70020 1.40359 1.13807 1.34830 0.86196 0.79105 0.77259 0.81093 1.19017 1.24687 1.19056 1.21665 0.88623 0.90680 0.93133 0.91170 1.22795 0.95963 0.95068 0.96960 1.21583 0.99356 0.98917 0.98457 1.22022 0.95123 1.00524 1.01740 0.91883 0.91759 0.84658 0.74068 0.86577 0.86085 0.74679 0.88875 0.90866 0.89582 0.93819 0.93586 0.94384 0.93059 0.94361 0.91542 0.91991 0.93907 0.89692 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.56 113.37 1.20 1.76 16 2 O -0.38 -6.84 10.62 -55.43 -0.59 -7.43 16 3 C 0.65 14.01 8.75 129.79 1.14 15.15 16 4 O -0.60 -15.98 16.13 19.81 0.32 -15.66 16 5 N -0.69 -12.97 5.53 -594.63 -3.29 -16.26 16 6 C 0.12 1.94 6.15 85.63 0.53 2.47 16 7 C 0.52 10.46 7.90 87.66 0.69 11.16 16 8 O -0.57 -14.89 15.27 -3.04 -0.05 -14.93 16 9 N -0.69 -13.79 4.67 -439.33 -2.05 -15.84 16 10 C 0.15 3.61 3.34 45.67 0.15 3.76 16 11 H 0.10 2.59 7.35 -2.38 -0.02 2.57 16 12 C -0.13 -3.84 4.12 -10.31 -0.04 -3.89 16 13 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 14 C -0.10 -2.75 5.18 30.63 0.16 -2.59 16 15 C -0.14 -4.45 5.70 30.58 0.17 -4.28 16 16 C 0.12 4.80 4.46 86.47 0.39 5.19 16 17 N -0.59 -25.35 2.24 -681.82 -1.53 -26.87 16 18 C -0.26 -13.66 9.74 84.03 0.82 -12.85 16 19 H 0.05 2.65 8.06 -2.91 -0.02 2.62 16 20 C -0.02 -1.04 5.15 84.86 0.44 -0.60 16 21 N -0.95 -57.86 13.97 21.65 0.30 -57.56 16 22 Si 0.93 45.17 24.34 68.60 1.67 46.84 16 23 H -0.26 -11.91 6.25 99.48 0.62 -11.28 16 24 H -0.32 -15.93 7.11 99.48 0.71 -15.22 16 25 H -0.27 -12.47 6.70 99.48 0.67 -11.81 16 26 C 0.17 5.75 3.34 45.46 0.15 5.90 16 27 H 0.07 2.52 7.88 -2.39 -0.02 2.50 16 28 C -0.10 -2.90 1.34 -51.76 -0.07 -2.96 16 29 C -0.13 -3.22 8.97 71.98 0.65 -2.58 16 30 C -0.14 -3.83 7.36 71.98 0.53 -3.30 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.42 7.75 7.55 -92.71 -0.70 7.05 16 35 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.41 6.91 6.80 -92.70 -0.63 6.28 16 38 H 0.09 2.31 4.69 -2.39 -0.01 2.30 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.04 1.56 6.67 -2.39 -0.02 1.54 16 42 H 0.05 1.71 5.84 -2.38 -0.01 1.70 16 43 H 0.04 1.72 3.54 -2.39 -0.01 1.71 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.07 1.39 5.91 -2.39 -0.01 1.38 16 47 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.04 1.33 8.05 -2.39 -0.02 1.31 16 49 H 0.08 2.47 1.95 -2.38 0.00 2.46 16 50 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.53 377.05 1.22 -70.31 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.47 Total: 25.07 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.90 Total: 12.34 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -6.57 Total: -116.54 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.32 Total: -38.02 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -71.53 1.22 -70.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316719193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.080 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds