Wall clock time and date at job start Sat Apr 11 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34640 * 117.00441 * 2 1 4 4 O 1.21515 * 119.99779 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00320 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99928 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47282 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99614 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00629 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00531 * 179.72372 * 9 7 6 11 11 H 1.09004 * 112.86255 * 25.61755 * 10 9 7 12 12 C 1.54144 * 113.64142 * 254.34444 * 10 9 7 13 13 H 1.08996 * 114.25034 * 104.29150 * 12 10 9 14 14 C 1.53065 * 111.68760 * 333.51141 * 12 10 9 15 15 C 1.53026 * 109.40787 * 213.59719 * 14 12 10 16 16 C 1.52937 * 108.93030 * 64.65045 * 15 14 12 17 17 N 1.44287 * 109.52840 * 302.88622 * 16 15 14 18 18 C 1.36940 * 117.26170 * 218.96953 * 17 16 15 19 19 H 1.08004 * 120.00026 * 151.78839 * 18 17 16 20 20 C 1.38815 * 119.99851 * 331.78740 * 18 17 16 21 21 N 1.31617 * 119.99961 * 343.73425 * 20 18 17 22 22 Si 1.86793 * 119.99954 * 163.73358 * 20 18 17 23 23 H 1.48504 * 109.46969 * 59.99898 * 22 20 18 24 24 H 1.48500 * 109.47506 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47179 * 300.00554 * 22 20 18 26 26 C 1.45094 * 124.25326 * 39.48262 * 17 16 15 27 27 H 1.09000 * 112.25457 * 203.66739 * 26 17 16 28 28 C 1.53385 * 114.63105 * 73.21889 * 26 17 16 29 29 C 1.53000 * 113.68761 * 103.21396 * 28 26 17 30 30 C 1.52999 * 113.68512 * 332.08837 * 28 26 17 31 31 H 1.09001 * 109.47012 * 300.00170 * 1 2 3 32 32 H 1.09004 * 109.46944 * 59.99838 * 1 2 3 33 33 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 34 34 H 0.96995 * 120.00061 * 0.02562 * 5 3 2 35 35 H 1.09003 * 109.47016 * 60.00154 * 6 5 3 36 36 H 1.09007 * 109.47101 * 300.00385 * 6 5 3 37 37 H 0.97003 * 119.99052 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.48537 * 333.57774 * 14 12 10 39 39 H 1.08996 * 109.48254 * 93.61706 * 14 12 10 40 40 H 1.09003 * 109.55938 * 184.48226 * 15 14 12 41 41 H 1.08998 * 109.56099 * 304.80683 * 15 14 12 42 42 H 1.08997 * 109.40516 * 62.78496 * 16 15 14 43 43 H 1.09001 * 109.39780 * 182.52403 * 16 15 14 44 44 H 0.96999 * 119.99700 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.47138 * 176.53643 * 29 28 26 46 46 H 1.08998 * 109.47034 * 296.53949 * 29 28 26 47 47 H 1.09000 * 109.46639 * 56.53614 * 29 28 26 48 48 H 1.09002 * 109.47330 * 334.89701 * 30 28 26 49 49 H 1.09006 * 109.47446 * 94.89805 * 30 28 26 50 50 H 1.09004 * 109.47416 * 214.89718 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0743 2.5754 0.0011 7 6 5.5682 2.3780 0.0022 8 8 6.0318 1.2573 0.0021 9 7 6.3893 3.4468 0.0024 10 6 7.8416 3.2549 0.0096 11 1 8.1448 2.3001 -0.4201 12 6 8.4982 3.5562 1.3713 13 1 8.7859 2.6692 1.9356 14 6 7.6797 4.5627 2.1835 15 6 8.6246 5.4359 3.0120 16 6 9.4907 6.2672 2.0644 17 7 10.2073 5.3896 1.1710 18 6 11.5002 5.7232 0.8673 19 1 12.2117 4.9513 0.6134 20 6 11.8964 7.0534 0.8857 21 7 10.9921 8.0096 0.8752 22 14 13.7131 7.4864 0.9256 23 1 14.3811 6.9297 -0.2782 24 1 13.8699 8.9630 0.9398 25 1 14.3325 6.9105 2.1462 26 6 9.6425 4.1941 0.5734 27 1 10.4091 3.4742 0.2868 28 6 8.6257 4.4573 -0.5444 29 6 9.1854 4.2313 -1.9503 30 6 7.8879 5.7902 -0.4027 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9374 0.4566 0.0005 35 1 3.7811 3.1322 0.8911 36 1 3.7817 3.1327 -0.8889 37 1 6.0185 4.3431 0.0021 38 1 7.1025 5.1926 1.5066 39 1 7.0022 4.0277 2.8489 40 1 8.0421 6.0997 3.6509 41 1 9.2624 4.8014 3.6274 42 1 8.8541 6.9342 1.4831 43 1 10.1978 6.8591 2.6456 44 1 11.2690 8.9392 0.8884 45 1 8.3932 4.3770 -2.6845 46 1 9.9908 4.9411 -2.1391 47 1 9.5711 3.2149 -2.0286 48 1 7.8796 6.0914 0.6448 49 1 8.3953 6.5512 -0.9957 50 1 6.8630 5.6776 -0.7565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316719195.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:26 Heat of formation + Delta-G solvation = -51.851455 kcal Electronic energy + Delta-G solvation = -31215.260943 eV Core-core repulsion = 27051.935804 eV Total energy + Delta-G solvation = -4163.325139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.13598 -40.66557 -39.17945 -36.88564 -35.44868 -34.77140 -33.34013 -32.85986 -30.41389 -30.02544 -29.00865 -27.19757 -26.93289 -25.48610 -24.40131 -22.51428 -21.84729 -21.23079 -20.27151 -19.62154 -19.18772 -17.68159 -17.23284 -16.96532 -16.92132 -16.60807 -15.96230 -15.62244 -15.10709 -14.79830 -14.57775 -14.36766 -14.12014 -13.77487 -13.62776 -13.28160 -13.26270 -12.85116 -12.63525 -12.54336 -12.36532 -12.35671 -11.99388 -11.63014 -11.47454 -11.19108 -11.07626 -11.06032 -10.94847 -10.88561 -10.74291 -10.45913 -10.30790 -10.17249 -10.03346 -9.76085 -9.64090 -9.60802 -9.44339 -9.14392 -8.68991 -8.37259 -6.65820 -5.80833 -3.27607 1.79420 2.43292 2.54869 3.16729 3.35659 3.41710 3.43574 4.00197 4.45580 4.53892 4.83069 4.90113 4.91847 4.96874 5.01542 5.06115 5.17900 5.23205 5.29445 5.45774 5.58774 5.64527 5.77957 5.81250 5.89051 5.94384 6.05020 6.07776 6.11828 6.16900 6.24245 6.36651 6.40955 6.51627 6.54593 6.57090 6.69561 6.74195 6.78565 6.93566 7.00606 7.09554 7.16578 7.38693 7.49684 7.71468 7.81546 8.01955 8.09210 8.45262 9.24165 9.89429 10.29295 11.23435 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029323 B = 0.002400 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.638219 B =11661.624646 C =11886.528802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.574 6.574 5 N -0.696 5.696 6 C 0.116 3.884 7 C 0.507 3.493 8 O -0.542 6.542 9 N -0.700 5.700 10 C 0.125 3.875 11 H 0.109 0.891 12 C -0.131 4.131 13 H 0.072 0.928 14 C -0.101 4.101 15 C -0.147 4.147 16 C 0.182 3.818 17 N -0.566 5.566 18 C -0.267 4.267 19 H 0.064 0.936 20 C 0.010 3.990 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.190 3.810 27 H 0.077 0.923 28 C -0.110 4.110 29 C -0.126 4.126 30 C -0.139 4.139 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.419 0.581 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.404 0.596 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.254 0.746 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.096 0.904 49 H 0.064 0.936 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.030 -10.561 -1.415 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.402 3.598 4 O -0.463 6.463 5 N -0.358 5.358 6 C -0.011 4.011 7 C 0.292 3.708 8 O -0.420 6.420 9 N -0.351 5.351 10 C 0.020 3.980 11 H 0.126 0.874 12 C -0.153 4.153 13 H 0.090 0.910 14 C -0.139 4.139 15 C -0.186 4.186 16 C 0.056 3.944 17 N -0.283 5.283 18 C -0.397 4.397 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.543 5.543 22 Si 0.730 3.270 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.079 3.921 27 H 0.095 0.905 28 C -0.115 4.115 29 C -0.183 4.183 30 C -0.195 4.195 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.258 0.742 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.241 0.759 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.058 -10.672 -1.390 19.331 hybrid contribution 0.823 0.432 -0.101 0.935 sum -15.235 -10.240 -1.492 18.417 Atomic orbital electron populations 1.23219 0.74175 1.03561 1.02825 1.86252 1.24320 1.30803 1.87028 1.17975 0.83093 0.82289 0.76401 1.91016 1.64689 1.34802 1.55817 1.44192 1.03208 1.10505 1.77915 1.21064 0.89888 0.84786 1.05352 1.20325 0.88278 0.85581 0.76610 1.90696 1.77240 1.23726 1.50353 1.46010 1.07346 1.08683 1.73100 1.22922 0.76887 1.00041 0.98142 0.87351 1.23296 0.98068 0.98620 0.95276 0.90972 1.21459 0.97335 0.96986 0.98100 1.22119 0.98525 0.99019 0.98914 1.20353 0.93896 0.90262 0.89845 1.42830 1.11593 1.24649 1.49233 1.19202 0.86005 0.91001 1.43444 0.91872 1.25020 0.97352 0.96123 1.00457 1.70050 1.31690 0.99049 1.53525 0.86415 0.85480 0.76963 0.78134 1.20945 1.21739 1.21075 1.21101 0.91139 0.89862 0.89991 0.90509 1.23001 0.97850 0.93470 0.97157 1.21618 1.00386 1.00968 0.95363 1.22024 0.96422 0.95969 1.05098 0.91743 0.91768 0.87878 0.74229 0.87918 0.87980 0.75881 0.90944 0.93847 0.93078 0.92822 0.94426 0.91587 0.93634 0.94146 0.91700 0.93515 0.88599 0.91728 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.79 10.61 -40.32 -0.43 -4.22 16 3 C 0.65 7.73 8.75 54.05 0.47 8.20 16 4 O -0.57 -8.15 16.13 -19.28 -0.31 -8.46 16 5 N -0.70 -7.52 5.53 -66.46 -0.37 -7.89 16 6 C 0.12 1.15 6.15 -5.19 -0.03 1.12 16 7 C 0.51 6.18 7.90 -10.99 -0.09 6.09 16 8 O -0.54 -8.26 15.29 5.56 0.08 -8.17 16 9 N -0.70 -8.50 4.33 -52.80 -0.23 -8.73 16 10 C 0.12 1.83 3.59 -66.89 -0.24 1.59 16 11 H 0.11 1.68 7.38 -51.93 -0.38 1.30 16 12 C -0.13 -2.13 4.30 -89.79 -0.39 -2.52 16 13 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 14 C -0.10 -1.57 4.66 -26.68 -0.12 -1.69 16 15 C -0.15 -2.60 6.03 -26.75 -0.16 -2.76 16 16 C 0.18 3.95 3.93 -5.25 -0.02 3.93 16 17 N -0.57 -12.69 2.61 -167.99 -0.44 -13.13 16 18 C -0.27 -6.79 9.40 -15.06 -0.14 -6.93 16 19 H 0.06 1.61 7.86 -52.48 -0.41 1.20 16 20 C 0.01 0.25 4.79 -17.43 -0.08 0.17 16 21 N -0.90 -24.21 11.08 55.49 0.61 -23.59 16 22 Si 0.90 20.89 29.58 -169.99 -5.03 15.86 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.19 3.59 3.57 -68.29 -0.24 3.35 16 27 H 0.08 1.49 7.97 -51.93 -0.41 1.08 16 28 C -0.11 -1.81 1.35 -153.86 -0.21 -2.02 16 29 C -0.13 -2.01 9.11 37.16 0.34 -1.68 16 30 C -0.14 -2.30 7.02 37.16 0.26 -2.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.42 4.48 7.55 -40.82 -0.31 4.17 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.40 4.30 5.60 -40.82 -0.23 4.07 16 38 H 0.07 1.06 3.74 -51.93 -0.19 0.87 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.87 5.53 -51.93 -0.29 0.59 16 43 H 0.07 1.65 6.59 -51.93 -0.34 1.30 16 44 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.69 8.02 -51.93 -0.42 0.27 16 48 H 0.10 1.70 1.94 -51.93 -0.10 1.60 16 49 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 50 H 0.03 0.38 6.31 -51.93 -0.33 0.06 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -30.04 382.00 -7.55 -37.59 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.62 Total: 8.71 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 0.41 Total: 6.26 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.42 Total: -53.33 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.65 Total: -20.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.04 -7.55 -37.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316719195.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.259 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds