Wall clock time and date at job start Sat Apr 11 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34640 * 117.00441 * 2 1 4 4 O 1.21515 * 119.99779 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00320 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99928 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47282 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99614 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00629 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00531 * 179.72372 * 9 7 6 11 11 H 1.09004 * 112.86255 * 25.61755 * 10 9 7 12 12 C 1.54144 * 113.64142 * 254.34444 * 10 9 7 13 13 H 1.08996 * 114.25034 * 104.29150 * 12 10 9 14 14 C 1.53065 * 111.68760 * 333.51141 * 12 10 9 15 15 C 1.53026 * 109.40787 * 213.59719 * 14 12 10 16 16 C 1.52937 * 108.93030 * 64.65045 * 15 14 12 17 17 N 1.44287 * 109.52840 * 302.88622 * 16 15 14 18 18 C 1.36940 * 117.26170 * 218.96953 * 17 16 15 19 19 H 1.08004 * 120.00026 * 151.78839 * 18 17 16 20 20 C 1.38815 * 119.99851 * 331.78740 * 18 17 16 21 21 N 1.31617 * 119.99961 * 343.73425 * 20 18 17 22 22 Si 1.86793 * 119.99954 * 163.73358 * 20 18 17 23 23 H 1.48504 * 109.46969 * 59.99898 * 22 20 18 24 24 H 1.48500 * 109.47506 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47179 * 300.00554 * 22 20 18 26 26 C 1.45094 * 124.25326 * 39.48262 * 17 16 15 27 27 H 1.09000 * 112.25457 * 203.66739 * 26 17 16 28 28 C 1.53385 * 114.63105 * 73.21889 * 26 17 16 29 29 C 1.53000 * 113.68761 * 103.21396 * 28 26 17 30 30 C 1.52999 * 113.68512 * 332.08837 * 28 26 17 31 31 H 1.09001 * 109.47012 * 300.00170 * 1 2 3 32 32 H 1.09004 * 109.46944 * 59.99838 * 1 2 3 33 33 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 34 34 H 0.96995 * 120.00061 * 0.02562 * 5 3 2 35 35 H 1.09003 * 109.47016 * 60.00154 * 6 5 3 36 36 H 1.09007 * 109.47101 * 300.00385 * 6 5 3 37 37 H 0.97003 * 119.99052 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.48537 * 333.57774 * 14 12 10 39 39 H 1.08996 * 109.48254 * 93.61706 * 14 12 10 40 40 H 1.09003 * 109.55938 * 184.48226 * 15 14 12 41 41 H 1.08998 * 109.56099 * 304.80683 * 15 14 12 42 42 H 1.08997 * 109.40516 * 62.78496 * 16 15 14 43 43 H 1.09001 * 109.39780 * 182.52403 * 16 15 14 44 44 H 0.96999 * 119.99700 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.47138 * 176.53643 * 29 28 26 46 46 H 1.08998 * 109.47034 * 296.53949 * 29 28 26 47 47 H 1.09000 * 109.46639 * 56.53614 * 29 28 26 48 48 H 1.09002 * 109.47330 * 334.89701 * 30 28 26 49 49 H 1.09006 * 109.47446 * 94.89805 * 30 28 26 50 50 H 1.09004 * 109.47416 * 214.89718 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0743 2.5754 0.0011 7 6 5.5682 2.3780 0.0022 8 8 6.0318 1.2573 0.0021 9 7 6.3893 3.4468 0.0024 10 6 7.8416 3.2549 0.0096 11 1 8.1448 2.3001 -0.4201 12 6 8.4982 3.5562 1.3713 13 1 8.7859 2.6692 1.9356 14 6 7.6797 4.5627 2.1835 15 6 8.6246 5.4359 3.0120 16 6 9.4907 6.2672 2.0644 17 7 10.2073 5.3896 1.1710 18 6 11.5002 5.7232 0.8673 19 1 12.2117 4.9513 0.6134 20 6 11.8964 7.0534 0.8857 21 7 10.9921 8.0096 0.8752 22 14 13.7131 7.4864 0.9256 23 1 14.3811 6.9297 -0.2782 24 1 13.8699 8.9630 0.9398 25 1 14.3325 6.9105 2.1462 26 6 9.6425 4.1941 0.5734 27 1 10.4091 3.4742 0.2868 28 6 8.6257 4.4573 -0.5444 29 6 9.1854 4.2313 -1.9503 30 6 7.8879 5.7902 -0.4027 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9374 0.4566 0.0005 35 1 3.7811 3.1322 0.8911 36 1 3.7817 3.1327 -0.8889 37 1 6.0185 4.3431 0.0021 38 1 7.1025 5.1926 1.5066 39 1 7.0022 4.0277 2.8489 40 1 8.0421 6.0997 3.6509 41 1 9.2624 4.8014 3.6274 42 1 8.8541 6.9342 1.4831 43 1 10.1978 6.8591 2.6456 44 1 11.2690 8.9392 0.8884 45 1 8.3932 4.3770 -2.6845 46 1 9.9908 4.9411 -2.1391 47 1 9.5711 3.2149 -2.0286 48 1 7.8796 6.0914 0.6448 49 1 8.3953 6.5512 -0.9957 50 1 6.8630 5.6776 -0.7565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316719195.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:24 Heat of formation + Delta-G solvation = -72.325649 kcal Electronic energy + Delta-G solvation = -31216.148771 eV Core-core repulsion = 27051.935804 eV Total energy + Delta-G solvation = -4164.212967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.41875 -41.55506 -40.25288 -37.71227 -36.99379 -35.68975 -34.56424 -34.43039 -32.16293 -31.44573 -29.82768 -28.32113 -27.87599 -27.15399 -25.87540 -24.03245 -23.00916 -22.26920 -21.40960 -20.88159 -20.19383 -19.07821 -18.70426 -18.07963 -17.72302 -17.66170 -17.13840 -16.65208 -16.57467 -16.22531 -15.88329 -15.55268 -15.21705 -14.93628 -14.79906 -14.67218 -14.39255 -14.18269 -13.96926 -13.78649 -13.59469 -13.45784 -13.05641 -12.94127 -12.89993 -12.80010 -12.77229 -12.48942 -12.40481 -12.11588 -11.94776 -11.86787 -11.79407 -11.54121 -11.44684 -11.17832 -11.01846 -10.94199 -10.64713 -10.42882 -10.28792 -9.85594 -8.49971 -7.77255 -5.25443 1.03028 1.47198 1.48719 1.49521 1.54927 1.66378 2.18782 2.55381 3.26241 3.33053 3.56177 3.58821 3.71147 3.84762 3.96170 4.08059 4.29519 4.30668 4.32031 4.37897 4.40347 4.45094 4.51877 4.64546 4.69882 4.71074 4.73995 4.83917 4.89074 4.98695 5.00100 5.07743 5.14583 5.15806 5.20311 5.30524 5.33094 5.36111 5.43112 5.57254 5.60437 5.63968 5.74619 5.77314 6.03851 6.25195 6.47594 6.49824 7.12397 7.18742 7.28879 8.09275 8.38613 9.22434 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029323 B = 0.002400 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.638219 B =11661.624646 C =11886.528802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.649 3.351 4 O -0.600 6.600 5 N -0.694 5.694 6 C 0.120 3.880 7 C 0.515 3.485 8 O -0.571 6.571 9 N -0.693 5.693 10 C 0.149 3.851 11 H 0.106 0.894 12 C -0.126 4.126 13 H 0.072 0.928 14 C -0.094 4.094 15 C -0.138 4.138 16 C 0.191 3.809 17 N -0.577 5.577 18 C -0.271 4.271 19 H 0.056 0.944 20 C -0.037 4.037 21 N -0.922 5.922 22 Si 0.953 3.047 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.284 1.284 26 C 0.168 3.832 27 H 0.065 0.935 28 C -0.105 4.105 29 C -0.122 4.122 30 C -0.132 4.132 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.420 0.580 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.414 0.586 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.247 0.753 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.057 0.943 48 H 0.086 0.914 49 H 0.029 0.971 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.278 -12.015 -1.487 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.402 3.598 4 O -0.492 6.492 5 N -0.356 5.356 6 C -0.006 4.006 7 C 0.302 3.698 8 O -0.450 6.450 9 N -0.345 5.345 10 C 0.043 3.957 11 H 0.124 0.876 12 C -0.147 4.147 13 H 0.090 0.910 14 C -0.132 4.132 15 C -0.177 4.177 16 C 0.066 3.934 17 N -0.295 5.295 18 C -0.402 4.402 19 H 0.074 0.926 20 C -0.234 4.234 21 N -0.567 5.567 22 Si 0.783 3.217 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.210 1.210 26 C 0.058 3.942 27 H 0.083 0.917 28 C -0.109 4.109 29 C -0.180 4.180 30 C -0.189 4.189 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.259 0.741 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.253 0.747 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.104 0.896 49 H 0.048 0.952 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.328 -12.158 -1.468 22.043 hybrid contribution 1.512 0.797 -0.087 1.712 sum -16.816 -11.361 -1.555 20.354 Atomic orbital electron populations 1.23538 0.72435 1.05713 1.02808 1.86266 1.26056 1.29942 1.86676 1.18081 0.83228 0.82400 0.76054 1.90996 1.65260 1.35718 1.57206 1.44231 1.02992 1.10897 1.77458 1.21124 0.87796 0.84733 1.06961 1.20598 0.89066 0.84780 0.75387 1.90699 1.77919 1.24909 1.51515 1.45821 1.06117 1.09439 1.73132 1.22455 0.78287 0.98710 0.96269 0.87582 1.23240 0.96930 0.98465 0.96043 0.90956 1.21428 0.96911 0.96587 0.98226 1.21983 0.98385 0.98973 0.98340 1.20107 0.93071 0.90431 0.89809 1.42942 1.11006 1.25492 1.50081 1.19426 0.87596 0.90872 1.42265 0.92591 1.25586 1.00285 0.96248 1.01273 1.70177 1.32740 0.98731 1.55027 0.85571 0.82032 0.76192 0.77951 1.20659 1.22203 1.21028 1.21348 0.92140 0.88516 0.92152 0.91662 1.22831 0.97243 0.94377 0.96434 1.21569 1.00033 1.00721 0.95641 1.21925 0.98179 0.94844 1.03916 0.91801 0.91786 0.84709 0.74141 0.86300 0.86286 0.74669 0.89810 0.91443 0.91141 0.93667 0.95890 0.95685 0.94362 0.92249 0.94697 0.92437 0.89588 0.95202 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.56 113.37 1.20 1.76 16 2 O -0.38 -6.94 10.61 -55.49 -0.59 -7.53 16 3 C 0.65 14.07 8.75 129.79 1.14 15.21 16 4 O -0.60 -15.83 16.13 19.79 0.32 -15.51 16 5 N -0.69 -13.22 5.53 -594.60 -3.29 -16.51 16 6 C 0.12 1.96 6.15 85.63 0.53 2.49 16 7 C 0.52 10.82 7.90 87.66 0.69 11.51 16 8 O -0.57 -15.84 15.29 -3.03 -0.05 -15.88 16 9 N -0.69 -14.38 4.33 -439.35 -1.90 -16.28 16 10 C 0.15 3.99 3.59 45.67 0.16 4.16 16 11 H 0.11 3.03 7.38 -2.39 -0.02 3.01 16 12 C -0.13 -3.85 4.30 -10.25 -0.04 -3.89 16 13 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.09 -2.66 4.66 30.62 0.14 -2.52 16 15 C -0.14 -4.74 6.03 30.58 0.18 -4.55 16 16 C 0.19 8.49 3.93 86.77 0.34 8.83 16 17 N -0.58 -26.45 2.61 -685.40 -1.79 -28.24 16 18 C -0.27 -14.22 9.40 84.03 0.79 -13.43 16 19 H 0.06 2.95 7.86 -2.91 -0.02 2.93 16 20 C -0.04 -2.01 4.79 84.86 0.41 -1.60 16 21 N -0.92 -51.40 11.08 21.65 0.24 -51.16 16 22 Si 0.95 44.14 29.58 68.60 2.03 46.17 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 C 0.17 6.33 3.57 45.51 0.16 6.49 16 27 H 0.07 2.57 7.97 -2.39 -0.02 2.55 16 28 C -0.10 -3.32 1.35 -51.76 -0.07 -3.39 16 29 C -0.12 -3.81 9.11 71.98 0.66 -3.16 16 30 C -0.13 -4.23 7.02 71.98 0.51 -3.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 33 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.42 8.03 7.55 -92.71 -0.70 7.33 16 35 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.41 7.07 5.60 -92.71 -0.52 6.55 16 38 H 0.08 2.20 3.74 -2.39 -0.01 2.19 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.02 1.10 5.53 -2.39 -0.01 1.09 16 43 H 0.02 1.29 6.59 -2.39 -0.02 1.27 16 44 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.06 1.64 8.02 -2.39 -0.02 1.62 16 48 H 0.09 2.96 1.94 -2.39 0.00 2.96 16 49 H 0.03 1.15 8.04 -2.38 -0.02 1.13 16 50 H 0.07 1.59 6.31 -2.38 -0.02 1.58 16 Total: -1.00 -66.92 382.00 1.53 -65.40 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.24 Total: 25.38 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.79 Total: 14.17 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -6.74 Total: -112.19 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.32 Total: -38.93 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.92 1.53 -65.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316719195.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.930 kcal (2) G-P(sol) polarization free energy of solvation -66.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds