Wall clock time and date at job start Sat Apr 11 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30175 * 126.80335 * 2 1 4 4 O 1.20923 * 111.60590 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.56959 * 359.76939 * 4 3 2 6 6 C 1.50703 * 126.78054 * 180.28151 * 5 4 3 7 7 C 1.35450 * 106.44244 * 0.37450 * 5 4 3 8 8 C 1.50696 * 128.00717 * 179.91329 * 7 5 4 9 9 C 1.50707 * 109.47372 * 269.67899 * 8 7 5 10 10 O 1.21283 * 119.99439 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00343 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99681 * 0.02562 * 11 9 8 13 13 C 1.46497 * 120.00157 * 179.97438 * 11 9 8 14 14 C 1.53001 * 109.46922 * 90.00270 * 13 11 9 15 15 O 1.42902 * 109.47064 * 65.00111 * 14 13 11 16 16 C 1.42903 * 114.00110 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47099 * 180.02562 * 16 15 14 18 18 N 1.46492 * 109.47482 * 64.99611 * 17 16 15 19 19 C 1.46502 * 119.99851 * 269.99843 * 18 17 16 20 20 C 1.36933 * 120.00187 * 89.99985 * 18 17 16 21 21 H 1.08001 * 120.00298 * 22.68153 * 20 18 17 22 22 C 1.38816 * 120.00380 * 202.67989 * 20 18 17 23 23 N 1.31620 * 119.99531 * 11.49017 * 22 20 18 24 24 Si 1.86791 * 120.00238 * 191.49425 * 22 20 18 25 25 H 1.48500 * 109.47564 * 60.00133 * 24 22 20 26 26 H 1.48508 * 109.47042 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47143 * 299.99683 * 24 22 20 28 28 H 1.09000 * 109.47006 * 269.96815 * 1 2 3 29 29 H 1.08995 * 109.47452 * 29.97085 * 1 2 3 30 30 H 1.09006 * 109.47104 * 149.97192 * 1 2 3 31 31 H 1.08996 * 109.46880 * 270.11517 * 6 5 4 32 32 H 1.09005 * 109.46529 * 30.11102 * 6 5 4 33 33 H 1.09000 * 109.46877 * 150.11020 * 6 5 4 34 34 H 1.09004 * 109.47281 * 149.67776 * 8 7 5 35 35 H 1.09004 * 109.47481 * 29.67681 * 8 7 5 36 36 H 1.09007 * 109.47130 * 89.99889 * 12 11 9 37 37 H 1.09006 * 109.46933 * 209.99564 * 12 11 9 38 38 H 1.08996 * 109.47523 * 329.99825 * 12 11 9 39 39 H 1.08995 * 109.46998 * 210.00011 * 13 11 9 40 40 H 1.08994 * 109.47142 * 330.00455 * 13 11 9 41 41 H 1.09000 * 109.47243 * 184.99920 * 14 13 11 42 42 H 1.08997 * 109.47205 * 305.00543 * 14 13 11 43 43 H 1.08998 * 109.46590 * 299.99581 * 16 15 14 44 44 H 1.08990 * 109.47373 * 59.99531 * 16 15 14 45 45 H 1.08999 * 109.46891 * 185.00058 * 17 16 15 46 46 H 1.09000 * 109.46584 * 304.99437 * 17 16 15 47 47 H 1.09008 * 109.47180 * 93.93132 * 19 18 17 48 48 H 1.08997 * 109.47248 * 213.92778 * 19 18 17 49 49 H 1.09001 * 109.47477 * 333.93329 * 19 18 17 50 50 H 0.97003 * 119.99940 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0041 6 6 4.9022 -1.3696 0.0110 7 6 2.3540 -1.1321 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 6 1.8261 -3.0713 -1.4210 10 8 2.0313 -2.3105 -2.3431 11 7 1.4792 -4.3501 -1.6670 12 6 1.2307 -5.2688 -0.5531 13 6 1.3494 -4.8213 -3.0480 14 6 2.6965 -5.3627 -3.5309 15 8 3.0460 -6.5194 -2.7680 16 6 4.2947 -7.1059 -3.1407 17 6 4.5650 -8.3302 -2.2637 18 7 3.5574 -9.3581 -2.5360 19 6 2.3122 -9.3857 -1.7646 20 6 3.7794 -10.2931 -3.5115 21 1 4.7884 -10.5195 -3.8230 22 6 2.7075 -10.9501 -4.1000 23 7 1.4797 -10.5237 -3.8920 24 14 3.0075 -12.4392 -5.1871 25 1 3.6884 -13.4980 -4.3995 26 1 1.7087 -12.9549 -5.6897 27 1 3.8636 -12.0489 -6.3360 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8898 -0.5143 31 1 5.2201 -1.5549 -1.0150 32 1 5.6637 -0.7851 0.5274 33 1 4.7628 -2.3203 0.5255 34 1 1.0054 -2.7038 0.5144 35 1 2.7232 -3.1703 0.5128 36 1 0.1772 -5.2277 -0.2763 37 1 1.4875 -6.2842 -0.8554 38 1 1.8424 -4.9783 0.3009 39 1 0.6022 -5.6136 -3.0929 40 1 1.0404 -3.9939 -3.6867 41 1 2.6236 -5.6309 -4.5848 42 1 3.4625 -4.5979 -3.4026 43 1 4.2553 -7.4103 -4.1866 44 1 5.0936 -6.3772 -3.0042 45 1 5.5563 -8.7250 -2.4866 46 1 4.5162 -8.0426 -1.2135 47 1 1.5404 -8.8330 -2.3005 48 1 1.9916 -10.4186 -1.6291 49 1 2.4780 -8.9259 -0.7903 50 1 0.7307 -10.9826 -4.3035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316765521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:33 Heat of formation + Delta-G solvation = 3.303807 kcal Electronic energy + Delta-G solvation = -30474.692974 eV Core-core repulsion = 26313.759547 eV Total energy + Delta-G solvation = -4160.933427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.04463 -39.97206 -37.55032 -35.82976 -35.33734 -34.94831 -33.83533 -31.65471 -30.84571 -29.38721 -28.81544 -28.01283 -27.31827 -26.23795 -25.73605 -23.26720 -22.93762 -21.77313 -20.39479 -20.31526 -19.14583 -17.88156 -17.19975 -17.05379 -16.70113 -16.29344 -15.87395 -15.66066 -15.19741 -14.66133 -14.59117 -14.18860 -13.77838 -13.67567 -13.66137 -13.40807 -13.28727 -13.20414 -12.98035 -12.96283 -12.78458 -12.51350 -12.40194 -12.30261 -12.16181 -11.93683 -11.44858 -11.36057 -11.12145 -10.95681 -10.83586 -10.75841 -10.52723 -10.15183 -10.10140 -9.94703 -9.84403 -9.78307 -9.25646 -8.93823 -8.62470 -8.50026 -6.69158 -5.68420 -3.13802 1.31242 2.00694 2.56256 2.91488 3.09050 3.38803 3.44470 3.45003 3.99306 4.24278 4.26884 4.48102 4.52447 4.56008 4.70376 5.00860 5.03636 5.17082 5.18202 5.23337 5.25972 5.30596 5.38775 5.42284 5.43899 5.49803 5.53654 5.55795 5.60527 5.69557 5.74817 5.78640 5.93840 5.95696 5.98895 6.11660 6.18757 6.25399 6.52251 6.55985 6.76642 6.89170 7.36838 7.47253 7.79694 7.85735 7.92076 8.13110 8.14586 8.44044 9.28724 9.92214 10.42348 11.35959 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.002278 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.336448 B =12290.700828 C =12706.640949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.016 4.016 6 C -0.075 4.075 7 C -0.184 4.184 8 C -0.060 4.060 9 C 0.512 3.488 10 O -0.539 6.539 11 N -0.603 5.603 12 C 0.076 3.924 13 C 0.121 3.879 14 C 0.049 3.951 15 O -0.366 6.366 16 C 0.044 3.956 17 C 0.154 3.846 18 N -0.596 5.596 19 C 0.176 3.824 20 C -0.256 4.256 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.904 5.904 24 Si 0.902 3.098 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.022 0.978 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.031 0.969 48 H 0.037 0.963 49 H -0.008 1.008 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 17.260 10.921 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 N -0.077 5.077 4 O 0.031 5.969 5 C -0.080 4.080 6 C -0.132 4.132 7 C -0.188 4.188 8 C -0.101 4.101 9 C 0.299 3.701 10 O -0.416 6.416 11 N -0.336 5.336 12 C -0.067 4.067 13 C -0.002 4.002 14 C -0.029 4.029 15 O -0.285 6.285 16 C -0.035 4.035 17 C 0.026 3.974 18 N -0.319 5.319 19 C 0.031 3.969 20 C -0.386 4.386 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.549 5.549 24 Si 0.732 3.268 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.211 1.211 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.011 0.989 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.148 18.803 10.530 21.551 hybrid contribution 0.137 -1.561 -1.060 1.891 sum 0.285 17.242 9.470 19.673 Atomic orbital electron populations 1.20150 0.86139 1.03917 1.03066 1.23339 0.98778 0.88393 1.02050 1.73801 0.89261 1.23885 1.20721 1.84778 1.21656 1.22394 1.68066 1.24181 0.98115 0.83819 1.01867 1.20363 0.90038 0.98416 1.04430 1.20245 0.91882 0.95998 1.10657 1.19920 1.04399 0.90238 0.95504 1.20461 0.76934 0.81641 0.91029 1.90705 1.49928 1.54806 1.46200 1.47771 1.68213 1.09848 1.07720 1.21935 1.00356 0.95839 0.88598 1.21547 0.97191 0.99417 0.81995 1.22743 0.96138 0.88483 0.95543 1.87917 1.39451 1.42090 1.59075 1.23452 0.83843 0.95375 1.00849 1.20874 0.93359 0.87198 0.95959 1.43862 1.17802 1.29962 1.40229 1.20685 0.87651 0.99092 0.89477 1.19153 0.92105 1.13699 1.13618 0.91683 1.25011 0.95651 1.00123 0.98808 1.70071 0.97640 1.40331 1.46855 0.86380 0.76735 0.83136 0.80504 1.21152 1.21690 1.21098 0.90178 0.90495 0.90203 0.89151 0.89770 0.89113 0.87609 0.87520 0.92791 0.88714 0.91539 0.89161 0.89090 0.92983 0.94207 0.93527 0.96036 0.92530 0.93938 0.95035 0.94453 0.98927 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.00 0.37 -0.29 16 2 C 0.03 0.40 7.33 -82.10 -0.60 -0.20 16 3 N -0.37 -5.01 12.07 33.42 0.40 -4.61 16 4 O 0.09 1.19 11.20 17.17 0.19 1.38 16 5 C -0.02 -0.18 7.49 -35.30 -0.26 -0.44 16 6 C -0.08 -0.54 10.30 36.01 0.37 -0.17 16 7 C -0.18 -2.05 4.81 -104.42 -0.50 -2.55 16 8 C -0.06 -0.55 4.58 -29.03 -0.13 -0.69 16 9 C 0.51 6.44 7.67 -10.98 -0.08 6.36 16 10 O -0.54 -8.83 15.61 5.56 0.09 -8.74 16 11 N -0.60 -7.38 2.84 -181.57 -0.52 -7.90 16 12 C 0.08 0.76 10.06 59.85 0.60 1.36 16 13 C 0.12 1.67 5.81 -4.04 -0.02 1.65 16 14 C 0.05 0.78 6.28 37.16 0.23 1.01 16 15 O -0.37 -6.69 8.73 -35.23 -0.31 -7.00 16 16 C 0.04 0.82 6.28 37.16 0.23 1.06 16 17 C 0.15 3.07 6.11 -4.05 -0.02 3.04 16 18 N -0.60 -14.67 2.89 -181.12 -0.52 -15.19 16 19 C 0.18 4.23 8.61 59.85 0.52 4.75 16 20 C -0.26 -6.92 9.67 -15.06 -0.15 -7.06 16 21 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 22 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 23 N -0.90 -25.91 10.61 55.49 0.59 -25.32 16 24 Si 0.90 21.63 29.57 -169.99 -5.03 16.60 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.52 7.43 -51.93 -0.39 0.14 16 34 H 0.11 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.11 0.76 6.70 -51.93 -0.35 0.41 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 1.22 7.12 -51.93 -0.37 0.85 16 38 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 39 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 40 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 46 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 47 H 0.03 0.82 7.43 -51.92 -0.39 0.44 16 48 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 49 H -0.01 -0.17 7.85 -51.93 -0.41 -0.57 16 50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 412.59 15.07 6.22 6.22 Total: -1.00 -34.14 412.59 -6.85 -41.00 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -8.43 Total: -4.24 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 0.46 Total: 7.80 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.05 Total: -53.02 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.03 Total: -14.35 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.14 -6.85 -41.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316765521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.301 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds