Wall clock time and date at job start Sat Apr 11 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 110.45933 * 2 1 4 4 O 1.21280 * 119.99900 * 243.60267 * 3 2 1 5 5 N 1.34780 * 119.99800 * 63.60303 * 3 2 1 6 6 C 1.47285 * 125.79505 * 354.68516 * 5 3 2 7 7 C 1.54321 * 107.30620 * 178.92488 * 6 5 3 8 8 C 1.55152 * 102.94389 * 337.82037 * 7 6 5 9 9 H 1.09006 * 111.00339 * 277.42470 * 8 7 6 10 10 C 1.53000 * 111.00878 * 153.57673 * 8 7 6 11 11 N 1.46897 * 109.47017 * 72.79637 * 10 8 7 12 12 C 1.46910 * 110.99902 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47167 * 180.02562 * 12 11 10 14 14 O 1.21295 * 119.99720 * 359.97438 * 13 12 11 15 15 N 1.34767 * 119.99860 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99995 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99593 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00074 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00074 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00061 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46992 * 89.99929 * 20 18 16 22 22 H 1.48497 * 109.47384 * 210.00078 * 20 18 16 23 23 H 1.48502 * 109.47211 * 329.99837 * 20 18 16 24 24 C 1.47421 * 125.64651 * 174.68819 * 5 3 2 25 25 C 1.54508 * 110.62637 * 237.31162 * 2 1 3 26 26 C 1.54476 * 104.06652 * 241.30026 * 25 2 1 27 27 O 1.44426 * 104.80136 * 336.02219 * 26 25 2 28 28 C 1.44421 * 105.27831 * 40.51116 * 27 26 25 29 29 H 1.09001 * 109.46982 * 50.80157 * 1 2 3 30 30 H 1.08999 * 109.47547 * 170.80441 * 1 2 3 31 31 H 1.09005 * 109.47201 * 290.80468 * 1 2 3 32 32 H 1.09000 * 109.85603 * 59.50261 * 6 5 3 33 33 H 1.08999 * 109.87230 * 298.36034 * 6 5 3 34 34 H 1.09005 * 110.72045 * 219.45152 * 7 6 5 35 35 H 1.09003 * 110.87274 * 96.25337 * 7 6 5 36 36 H 1.08993 * 109.47567 * 192.80406 * 10 8 7 37 37 H 1.08999 * 109.46487 * 312.80082 * 10 8 7 38 38 H 1.00898 * 111.00466 * 303.95820 * 11 10 8 39 39 H 1.09003 * 109.47136 * 300.00630 * 12 11 10 40 40 H 1.09003 * 109.46574 * 60.00299 * 12 11 10 41 41 H 0.97001 * 120.00038 * 359.97438 * 15 13 12 42 42 H 0.96996 * 120.00140 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.36788 * 85.25920 * 24 5 3 44 44 H 1.09009 * 110.36707 * 323.04330 * 24 5 3 45 45 H 1.09000 * 110.51533 * 359.94916 * 25 2 1 46 46 H 1.09004 * 110.50615 * 122.65478 * 25 2 1 47 47 H 1.09003 * 110.37386 * 217.19402 * 26 25 2 48 48 H 1.08997 * 110.46710 * 94.90235 * 26 25 2 49 49 H 1.08993 * 110.37647 * 200.65591 * 28 27 26 50 50 H 1.09002 * 110.46289 * 78.36261 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7062 1.8168 -0.9408 5 7 1.8061 2.2247 1.0455 6 6 0.9452 1.9060 2.1973 7 6 0.9818 3.1212 3.1479 8 6 2.3054 3.8293 2.7559 9 1 3.1584 3.3649 3.2508 10 6 2.2406 5.3256 3.0690 11 7 2.3214 5.5257 4.5220 12 6 2.2614 6.9540 4.8608 13 6 2.3474 7.1196 6.3562 14 8 2.4482 6.1438 7.0696 15 7 2.3113 8.3517 6.9009 16 6 2.3890 8.5024 8.2614 17 1 2.4796 7.6336 8.8965 18 6 2.3523 9.7728 8.8229 19 7 2.4263 9.9172 10.1270 20 14 2.1963 11.2755 7.7243 21 1 0.7600 11.5940 7.5222 22 1 2.8739 12.4305 8.3661 23 1 2.8310 10.9966 6.4110 24 6 2.3489 3.5832 1.2271 25 6 2.0743 -0.7810 -1.2170 26 6 2.8800 -1.9400 -0.5896 27 8 3.2417 -1.4679 0.7265 28 6 2.0713 -0.7797 1.2189 29 1 -0.3633 0.6495 -0.7964 30 1 -0.3634 -1.0144 -0.1642 31 1 -0.3634 0.3650 0.9607 32 1 1.3252 1.0225 2.7103 33 1 -0.0760 1.7304 1.8592 34 1 1.0114 2.7964 4.1880 35 1 0.1279 3.7761 2.9741 36 1 3.0742 5.8345 2.5852 37 1 1.3008 5.7340 2.6976 38 1 1.5966 5.0106 4.9989 39 1 3.0950 7.4745 4.3893 40 1 1.3214 7.3733 4.5019 41 1 2.2303 9.1320 6.3303 42 1 2.4010 10.8041 10.5190 43 1 1.7274 4.3127 0.7077 44 1 3.3755 3.6333 0.8639 45 1 1.2534 -1.1690 -1.8201 46 1 2.7244 -0.1457 -1.8187 47 1 3.7743 -2.1431 -1.1788 48 1 2.2639 -2.8360 -0.5152 49 1 2.3442 -0.0915 2.0188 50 1 1.3287 -1.4953 1.5718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317335327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:45 Heat of formation + Delta-G solvation = -103.009388 kcal Electronic energy + Delta-G solvation = -29544.567066 eV Core-core repulsion = 25379.023552 eV Total energy + Delta-G solvation = -4165.543513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30330 -39.34051 -38.50766 -37.82499 -35.57006 -34.26915 -33.90811 -32.06028 -31.64117 -30.26189 -29.69895 -27.48435 -26.98348 -25.23395 -24.21984 -23.22765 -22.99835 -21.68444 -20.60031 -19.41745 -19.35866 -18.36105 -17.34887 -16.92505 -16.81922 -16.33049 -15.91882 -15.70739 -15.55576 -15.06463 -14.89319 -14.74274 -14.35727 -14.22845 -13.72932 -13.60139 -13.46933 -13.27079 -13.23234 -13.13886 -12.84718 -12.75188 -12.50715 -12.32842 -12.07572 -11.99721 -11.86799 -11.71063 -11.46372 -11.34152 -11.19933 -11.13545 -10.95209 -10.84860 -10.61042 -10.42708 -9.99315 -9.93216 -9.59123 -9.00836 -8.62679 -8.22958 -8.17498 -6.32771 -3.84354 2.23309 2.52929 3.01491 3.05106 3.13885 3.47722 3.71787 3.78402 3.89130 4.01639 4.08839 4.19740 4.29758 4.40385 4.48839 4.60656 4.67462 4.73024 4.78382 4.87784 4.90577 4.99386 5.06514 5.11100 5.16948 5.19857 5.22515 5.28459 5.29350 5.36144 5.43867 5.47240 5.51836 5.55990 5.58754 5.61048 5.70909 5.77955 5.81475 5.89855 5.93165 6.07798 6.29397 7.02876 7.12646 7.52005 7.56508 7.77924 8.12644 8.57841 8.93131 9.40595 9.80534 10.80291 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031487 B = 0.001728 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.030214 B =16195.659367 C =16521.965506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.547 3.453 4 O -0.534 6.534 5 N -0.616 5.616 6 C 0.090 3.910 7 C -0.133 4.133 8 C -0.098 4.098 9 H 0.099 0.901 10 C 0.071 3.929 11 N -0.667 5.667 12 C 0.048 3.952 13 C 0.449 3.551 14 O -0.565 6.565 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.112 3.888 25 C -0.144 4.144 26 C 0.045 3.955 27 O -0.369 6.369 28 C 0.052 3.948 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.350 0.650 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.100 0.900 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 -19.132 -23.965 31.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C 0.335 3.665 4 O -0.411 6.411 5 N -0.350 5.350 6 C -0.032 4.032 7 C -0.171 4.171 8 C -0.117 4.117 9 H 0.117 0.883 10 C -0.059 4.059 11 N -0.300 5.300 12 C -0.085 4.085 13 C 0.235 3.765 14 O -0.447 6.447 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.011 4.011 25 C -0.181 4.181 26 C -0.032 4.032 27 O -0.287 6.287 28 C -0.025 4.025 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.170 0.830 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.113 0.887 48 H 0.080 0.920 49 H 0.118 0.882 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.292 -19.540 -23.727 31.189 hybrid contribution -1.324 1.661 -0.935 2.321 sum -6.616 -17.879 -24.662 31.170 Atomic orbital electron populations 1.21970 0.91256 1.03357 1.03415 1.22120 0.98016 0.93176 0.98355 1.19831 0.79505 0.86238 0.80945 1.90683 1.40403 1.75908 1.34069 1.48447 1.48624 1.16500 1.21447 1.22471 0.94684 0.99185 0.86851 1.22790 0.98155 0.96168 0.99982 1.22397 0.98922 0.96298 0.94103 0.88274 1.21849 1.00438 0.94156 0.89501 1.60032 1.55278 1.08790 1.05887 1.21711 1.00992 0.89924 0.95868 1.19700 0.84083 0.83896 0.88821 1.90564 1.53468 1.38291 1.62364 1.42209 1.66617 1.06112 1.08027 1.19434 1.47728 0.95919 0.80346 0.86269 1.25044 0.97639 0.97676 0.95812 1.69621 1.49175 1.23858 1.09423 0.86666 0.78914 0.83347 0.80430 1.19674 1.20153 1.19467 1.22241 1.00017 0.82954 0.95858 1.23081 1.01058 0.97155 0.96850 1.23463 0.99822 0.95926 0.83984 1.89187 1.34721 1.73597 1.31211 1.23698 0.88562 0.94975 0.95263 0.91588 0.90916 0.90961 0.90776 0.90665 0.88988 0.90387 0.90572 0.95095 0.83009 0.89403 0.93739 0.79682 0.91599 0.91283 0.90132 0.89761 0.88231 0.88747 0.92039 0.88235 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 7.98 37.16 0.30 -0.42 16 2 C -0.11 -0.87 0.69 -154.09 -0.11 -0.97 16 3 C 0.55 5.89 6.59 -10.98 -0.07 5.82 16 4 O -0.53 -7.74 15.60 5.56 0.09 -7.65 16 5 N -0.62 -5.64 3.22 -170.31 -0.55 -6.19 16 6 C 0.09 0.59 5.37 -2.92 -0.02 0.58 16 7 C -0.13 -0.97 5.90 -24.90 -0.15 -1.11 16 8 C -0.10 -0.88 3.25 -88.47 -0.29 -1.17 16 9 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 10 C 0.07 0.72 5.18 -3.83 -0.02 0.70 16 11 N -0.67 -9.50 6.13 -115.05 -0.70 -10.21 16 12 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 13 C 0.45 9.97 7.82 -10.99 -0.09 9.88 16 14 O -0.56 -14.87 15.78 5.54 0.09 -14.78 16 15 N -0.59 -13.85 5.09 -10.96 -0.06 -13.90 16 16 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 17 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 18 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 20 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 24 C 0.11 1.04 6.35 -2.53 -0.02 1.03 16 25 C -0.14 -1.07 6.30 -25.17 -0.16 -1.23 16 26 C 0.04 0.32 7.63 37.93 0.29 0.61 16 27 O -0.37 -3.73 11.65 -35.23 -0.41 -4.14 16 28 C 0.05 0.39 6.06 37.94 0.23 0.62 16 29 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.07 0.29 5.16 -51.93 -0.27 0.02 16 32 H 0.07 0.42 5.59 -51.93 -0.29 0.13 16 33 H 0.08 0.38 5.96 -51.93 -0.31 0.07 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.29 7.97 -51.93 -0.41 -0.13 16 38 H 0.35 5.06 7.93 -39.29 -0.31 4.75 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 44 H 0.08 0.85 8.09 -51.92 -0.42 0.43 16 45 H 0.08 0.45 7.71 -51.93 -0.40 0.04 16 46 H 0.10 0.97 6.52 -51.93 -0.34 0.63 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.10 0.77 5.29 -51.93 -0.27 0.50 16 50 H 0.07 0.39 7.87 -51.93 -0.41 -0.01 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -35.49 389.55 -7.84 -43.34 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.86 Total: 10.64 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.37 Total: 7.37 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.53 Total: -55.09 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.24 Total: -26.57 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.49 -7.84 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317335327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.674 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds