Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 110.45933 * 2 1 4 4 O 1.21280 * 119.99900 * 243.60267 * 3 2 1 5 5 N 1.34780 * 119.99800 * 63.60303 * 3 2 1 6 6 C 1.47285 * 125.79505 * 354.68516 * 5 3 2 7 7 C 1.54321 * 107.30620 * 178.92488 * 6 5 3 8 8 C 1.55152 * 102.94389 * 337.82037 * 7 6 5 9 9 H 1.09006 * 111.00339 * 277.42470 * 8 7 6 10 10 C 1.53000 * 111.00878 * 153.57673 * 8 7 6 11 11 N 1.46897 * 109.47017 * 72.79637 * 10 8 7 12 12 C 1.46910 * 110.99902 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47167 * 180.02562 * 12 11 10 14 14 O 1.21295 * 119.99720 * 359.97438 * 13 12 11 15 15 N 1.34767 * 119.99860 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99995 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99593 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00074 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00074 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00061 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46992 * 89.99929 * 20 18 16 22 22 H 1.48497 * 109.47384 * 210.00078 * 20 18 16 23 23 H 1.48502 * 109.47211 * 329.99837 * 20 18 16 24 24 C 1.47421 * 125.64651 * 174.68819 * 5 3 2 25 25 C 1.54508 * 110.62637 * 237.31162 * 2 1 3 26 26 C 1.54476 * 104.06652 * 241.30026 * 25 2 1 27 27 O 1.44426 * 104.80136 * 336.02219 * 26 25 2 28 28 C 1.44421 * 105.27831 * 40.51116 * 27 26 25 29 29 H 1.09001 * 109.46982 * 50.80157 * 1 2 3 30 30 H 1.08999 * 109.47547 * 170.80441 * 1 2 3 31 31 H 1.09005 * 109.47201 * 290.80468 * 1 2 3 32 32 H 1.09000 * 109.85603 * 59.50261 * 6 5 3 33 33 H 1.08999 * 109.87230 * 298.36034 * 6 5 3 34 34 H 1.09005 * 110.72045 * 219.45152 * 7 6 5 35 35 H 1.09003 * 110.87274 * 96.25337 * 7 6 5 36 36 H 1.08993 * 109.47567 * 192.80406 * 10 8 7 37 37 H 1.08999 * 109.46487 * 312.80082 * 10 8 7 38 38 H 1.00898 * 111.00466 * 303.95820 * 11 10 8 39 39 H 1.09003 * 109.47136 * 300.00630 * 12 11 10 40 40 H 1.09003 * 109.46574 * 60.00299 * 12 11 10 41 41 H 0.97001 * 120.00038 * 359.97438 * 15 13 12 42 42 H 0.96996 * 120.00140 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.36788 * 85.25920 * 24 5 3 44 44 H 1.09009 * 110.36707 * 323.04330 * 24 5 3 45 45 H 1.09000 * 110.51533 * 359.94916 * 25 2 1 46 46 H 1.09004 * 110.50615 * 122.65478 * 25 2 1 47 47 H 1.09003 * 110.37386 * 217.19402 * 26 25 2 48 48 H 1.08997 * 110.46710 * 94.90235 * 26 25 2 49 49 H 1.08993 * 110.37647 * 200.65591 * 28 27 26 50 50 H 1.09002 * 110.46289 * 78.36261 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7062 1.8168 -0.9408 5 7 1.8061 2.2247 1.0455 6 6 0.9452 1.9060 2.1973 7 6 0.9818 3.1212 3.1479 8 6 2.3054 3.8293 2.7559 9 1 3.1584 3.3649 3.2508 10 6 2.2406 5.3256 3.0690 11 7 2.3214 5.5257 4.5220 12 6 2.2614 6.9540 4.8608 13 6 2.3474 7.1196 6.3562 14 8 2.4482 6.1438 7.0696 15 7 2.3113 8.3517 6.9009 16 6 2.3890 8.5024 8.2614 17 1 2.4796 7.6336 8.8965 18 6 2.3523 9.7728 8.8229 19 7 2.4263 9.9172 10.1270 20 14 2.1963 11.2755 7.7243 21 1 0.7600 11.5940 7.5222 22 1 2.8739 12.4305 8.3661 23 1 2.8310 10.9966 6.4110 24 6 2.3489 3.5832 1.2271 25 6 2.0743 -0.7810 -1.2170 26 6 2.8800 -1.9400 -0.5896 27 8 3.2417 -1.4679 0.7265 28 6 2.0713 -0.7797 1.2189 29 1 -0.3633 0.6495 -0.7964 30 1 -0.3634 -1.0144 -0.1642 31 1 -0.3634 0.3650 0.9607 32 1 1.3252 1.0225 2.7103 33 1 -0.0760 1.7304 1.8592 34 1 1.0114 2.7964 4.1880 35 1 0.1279 3.7761 2.9741 36 1 3.0742 5.8345 2.5852 37 1 1.3008 5.7340 2.6976 38 1 1.5966 5.0106 4.9989 39 1 3.0950 7.4745 4.3893 40 1 1.3214 7.3733 4.5019 41 1 2.2303 9.1320 6.3303 42 1 2.4010 10.8041 10.5190 43 1 1.7274 4.3127 0.7077 44 1 3.3755 3.6333 0.8639 45 1 1.2534 -1.1690 -1.8201 46 1 2.7244 -0.1457 -1.8187 47 1 3.7743 -2.1431 -1.1788 48 1 2.2639 -2.8360 -0.5152 49 1 2.3442 -0.0915 2.0188 50 1 1.3287 -1.4953 1.5718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317335327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -132.003394 kcal Electronic energy + Delta-G solvation = -29545.824340 eV Core-core repulsion = 25379.023552 eV Total energy + Delta-G solvation = -4166.800788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.98198 -40.34722 -39.89666 -38.70644 -36.69326 -35.86665 -34.87179 -33.74628 -32.86048 -30.84435 -30.41144 -28.74016 -27.47514 -26.58629 -25.22438 -24.26760 -23.65915 -22.32564 -21.44892 -21.16849 -20.23278 -20.04491 -18.06135 -17.98792 -17.50217 -17.32747 -16.99343 -16.77059 -16.59993 -16.29053 -15.90531 -15.64815 -15.50844 -15.04714 -14.98095 -14.72510 -14.55111 -14.30575 -14.07518 -14.00175 -13.76267 -13.71336 -13.46956 -13.35684 -13.22393 -13.00067 -12.70962 -12.59681 -12.47104 -12.40670 -12.11608 -12.03464 -11.96579 -11.75449 -11.61821 -11.50549 -11.47110 -11.10259 -10.63108 -10.42587 -10.23938 -9.73672 -9.30574 -8.40486 -6.01367 1.31422 1.36210 1.45446 1.46006 1.83626 1.97097 2.23818 2.72542 2.92991 3.16206 3.18886 3.33034 3.43465 3.56288 3.68927 3.85527 3.93248 3.99931 4.16138 4.17293 4.19175 4.27327 4.30679 4.38941 4.44892 4.48758 4.52837 4.55901 4.59384 4.66476 4.72801 4.77444 4.78640 4.81550 4.89919 4.94696 4.97837 5.08642 5.14768 5.18066 5.26390 5.35283 5.53532 5.74952 5.91431 6.05582 6.40413 6.44071 6.60751 6.89128 7.00348 7.41008 7.97539 8.77090 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031487 B = 0.001728 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.030214 B =16195.659367 C =16521.965506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.536 3.464 4 O -0.583 6.583 5 N -0.616 5.616 6 C 0.089 3.911 7 C -0.129 4.129 8 C -0.091 4.091 9 H 0.080 0.920 10 C 0.075 3.925 11 N -0.687 5.687 12 C 0.062 3.938 13 C 0.448 3.552 14 O -0.614 6.614 15 N -0.591 5.591 16 C -0.329 4.329 17 H 0.055 0.945 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.256 1.256 22 H -0.277 1.277 23 H -0.232 1.232 24 C 0.113 3.887 25 C -0.144 4.144 26 C 0.042 3.958 27 O -0.403 6.403 28 C 0.051 3.949 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.347 0.653 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 -18.689 -26.601 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 C 0.326 3.674 4 O -0.464 6.464 5 N -0.349 5.349 6 C -0.032 4.032 7 C -0.166 4.166 8 C -0.110 4.110 9 H 0.098 0.902 10 C -0.054 4.054 11 N -0.320 5.320 12 C -0.070 4.070 13 C 0.236 3.764 14 O -0.498 6.498 15 N -0.233 5.233 16 C -0.458 4.458 17 H 0.074 0.926 18 C -0.214 4.214 19 N -0.575 5.575 20 Si 0.785 3.215 21 H -0.180 1.180 22 H -0.202 1.202 23 H -0.155 1.155 24 C -0.010 4.010 25 C -0.182 4.182 26 C -0.034 4.034 27 O -0.322 6.322 28 C -0.026 4.026 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.167 0.833 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.106 0.894 49 H 0.110 0.890 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.385 -19.113 -26.373 33.398 hybrid contribution -0.633 1.394 -0.050 1.531 sum -8.017 -17.720 -26.423 32.809 Atomic orbital electron populations 1.21993 0.88808 1.04781 1.03947 1.22172 0.99789 0.90882 0.98485 1.20506 0.78882 0.87516 0.80490 1.90655 1.42657 1.77057 1.35987 1.48555 1.48420 1.16211 1.21676 1.22661 0.95483 0.99237 0.85863 1.22789 0.97356 0.96413 1.00077 1.22231 0.99371 0.95846 0.93597 0.90183 1.21873 1.01653 0.94866 0.86969 1.60004 1.55766 1.07924 1.08280 1.21627 1.03736 0.91463 0.90224 1.21020 0.81118 0.82618 0.91661 1.90543 1.54814 1.39904 1.64571 1.42040 1.67386 1.07548 1.06341 1.19014 1.49891 0.94626 0.82275 0.92638 1.26123 0.96170 1.01534 0.97613 1.69805 1.50237 1.25270 1.12205 0.85359 0.79904 0.76964 0.79257 1.18020 1.20202 1.15487 1.22183 0.99217 0.83623 0.95996 1.23079 1.01392 0.96839 0.96841 1.23624 1.00303 0.96595 0.82871 1.89146 1.36443 1.74126 1.32529 1.23844 0.88500 0.95385 0.94849 0.92172 0.88660 0.89685 0.89794 0.88273 0.89062 0.89170 0.90270 0.92917 0.83349 0.87098 0.90169 0.77467 0.91177 0.90386 0.92101 0.87303 0.91256 0.88875 0.89402 0.88967 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 7.98 71.98 0.57 -0.40 16 2 C -0.11 -1.52 0.69 -51.91 -0.04 -1.56 16 3 C 0.54 11.45 6.59 87.66 0.58 12.03 16 4 O -0.58 -17.60 15.60 -3.03 -0.05 -17.64 16 5 N -0.62 -10.69 3.22 -811.12 -2.61 -13.30 16 6 C 0.09 0.96 5.37 86.68 0.47 1.42 16 7 C -0.13 -1.58 5.90 31.78 0.19 -1.40 16 8 C -0.09 -1.52 3.25 -9.40 -0.03 -1.55 16 9 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 10 C 0.08 1.35 5.18 86.30 0.45 1.80 16 11 N -0.69 -18.23 6.13 -517.92 -3.17 -21.40 16 12 C 0.06 1.76 6.17 85.55 0.53 2.29 16 13 C 0.45 19.63 7.82 87.66 0.69 20.32 16 14 O -0.61 -33.27 15.78 -3.08 -0.05 -33.32 16 15 N -0.59 -27.34 5.09 -306.99 -1.56 -28.90 16 16 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 17 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 18 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 19 N -0.93 -56.05 13.96 21.66 0.30 -55.75 16 20 Si 0.97 38.28 27.74 68.60 1.90 40.18 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 24 C 0.11 2.02 6.35 86.86 0.55 2.57 16 25 C -0.14 -2.01 6.30 31.61 0.20 -1.81 16 26 C 0.04 0.56 7.63 72.48 0.55 1.11 16 27 O -0.40 -7.90 11.65 -148.98 -1.74 -9.64 16 28 C 0.05 0.68 6.06 72.49 0.44 1.12 16 29 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 30 H 0.09 0.28 8.08 -2.39 -0.02 0.26 16 31 H 0.08 0.37 5.16 -2.38 -0.01 0.35 16 32 H 0.08 0.78 5.59 -2.39 -0.01 0.76 16 33 H 0.10 0.64 5.96 -2.39 -0.01 0.62 16 34 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 0.93 7.91 -2.39 -0.02 0.91 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 0.76 7.97 -2.39 -0.02 0.74 16 38 H 0.35 9.55 7.93 -89.70 -0.71 8.84 16 39 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 41 H 0.39 14.81 5.76 -92.71 -0.53 14.28 16 42 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.08 1.26 8.04 -2.39 -0.02 1.24 16 44 H 0.06 1.32 8.09 -2.38 -0.02 1.30 16 45 H 0.11 0.92 7.71 -2.39 -0.02 0.90 16 46 H 0.07 1.42 6.52 -2.39 -0.02 1.40 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.09 1.32 5.29 -2.39 -0.01 1.31 16 50 H 0.10 0.76 7.87 -2.39 -0.02 0.75 16 Total: -1.00 -84.80 389.55 -0.84 -85.64 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.33 Total: 36.82 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.46 Total: 17.31 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -7.04 Total: -119.35 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: -1.83 Total: -60.60 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.18 kcal Total: -84.80 -0.84 -85.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317335327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.364 kcal (2) G-P(sol) polarization free energy of solvation -84.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds