Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46914 * 2 1 4 4 C 1.53006 * 109.46864 * 239.99849 * 2 1 3 5 5 C 1.50703 * 109.46942 * 60.00045 * 4 2 1 6 6 H 1.08005 * 119.99876 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99789 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00536 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47452 * 59.99581 * 9 7 5 11 11 H 1.48506 * 109.47061 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47245 * 299.99670 * 9 7 5 13 13 C 1.53002 * 109.47197 * 120.00250 * 2 1 3 14 14 N 1.46496 * 109.46704 * 299.99604 * 13 2 1 15 15 C 1.34784 * 119.99815 * 179.97438 * 14 13 2 16 16 O 1.21279 * 119.99673 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00109 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47055 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 17 21 21 C 1.52997 * 110.53679 * 302.82829 * 20 19 18 22 22 N 1.47308 * 110.59995 * 179.97438 * 20 19 18 23 23 C 1.34524 * 106.62192 * 241.47293 * 22 20 19 24 24 O 1.21541 * 123.76907 * 179.97438 * 23 22 20 25 25 N 1.33787 * 112.46022 * 359.97438 * 23 22 20 26 26 C 1.34772 * 111.64161 * 0.02562 * 25 23 22 27 27 O 1.21235 * 127.15444 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.46935 * 299.99850 * 1 2 3 29 29 H 1.08992 * 109.47061 * 59.99825 * 1 2 3 30 30 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46862 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46998 * 299.99788 * 3 2 1 33 33 H 1.08992 * 109.47715 * 60.00319 * 3 2 1 34 34 H 1.08993 * 109.46765 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.46884 * 300.00176 * 4 2 1 36 36 H 0.96994 * 120.00933 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.46698 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.47142 * 59.99766 * 13 2 1 39 39 H 0.96994 * 120.00700 * 0.02562 * 14 13 2 40 40 H 1.08996 * 109.47197 * 60.00754 * 17 15 14 41 41 H 1.09001 * 109.47328 * 300.00281 * 17 15 14 42 42 H 1.09001 * 109.47502 * 60.00512 * 18 17 15 43 43 H 1.09001 * 109.47289 * 300.00308 * 18 17 15 44 44 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 45 45 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 46 46 H 1.08999 * 109.47266 * 59.99528 * 21 20 19 47 47 H 1.08997 * 109.47734 * 180.02562 * 21 20 19 48 48 H 1.09008 * 109.46890 * 300.00311 * 21 20 19 49 49 H 0.97000 * 126.68904 * 61.50980 * 22 20 19 50 50 H 0.96994 * 124.18454 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4823 -3.7320 8 7 2.6262 -1.5515 -3.8528 9 14 1.2481 0.3988 -5.2572 10 1 1.7440 1.7984 -5.2573 11 1 1.7419 -0.3021 -6.4697 12 1 -0.2369 0.3999 -5.2571 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4453 15 6 1.8770 -0.4914 3.6695 16 8 2.5742 -1.4775 3.7807 17 6 1.3752 0.2193 4.8999 18 6 1.8851 -0.5020 6.1491 19 6 1.3751 0.2192 7.3985 20 6 1.8856 -0.5018 8.6476 21 6 1.4480 -1.9678 8.6377 22 7 1.4089 0.1735 9.8670 23 6 2.5034 0.5877 10.5304 24 8 2.4664 1.1866 11.5873 25 7 3.6371 0.2668 9.8967 26 6 3.3943 -0.3936 8.7472 27 8 4.2123 -0.8143 7.9576 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1299 -0.7209 -1.2495 35 1 1.6766 -1.7489 -1.2492 36 1 2.8599 -1.8834 -4.7337 37 1 3.1300 -0.7217 1.2489 38 1 1.6767 -1.7490 1.2492 39 1 0.9939 0.7578 2.3564 40 1 0.2852 0.2201 4.9000 41 1 1.7393 1.2467 4.9000 42 1 2.9751 -0.5025 6.1490 43 1 1.5214 -1.5296 6.1493 44 1 1.7386 1.2468 7.3985 45 1 0.2852 0.2193 7.3984 46 1 1.8524 -2.4617 7.7541 47 1 1.8199 -2.4642 9.5340 48 1 0.3595 -2.0219 8.6179 49 1 0.4857 0.2953 10.1388 50 1 4.5243 0.4832 10.2237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325221497.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -142.234362 kcal Electronic energy + Delta-G solvation = -29372.249912 eV Core-core repulsion = 25205.005476 eV Total energy + Delta-G solvation = -4167.244436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.54690 -40.83734 -39.83491 -38.69063 -37.84124 -36.30584 -35.18831 -34.33667 -33.85195 -31.61268 -29.25091 -28.61689 -27.93411 -27.25943 -25.78923 -24.80459 -23.80636 -23.28584 -21.30070 -20.99249 -19.81988 -19.28511 -18.36089 -18.02140 -17.68016 -17.56364 -17.02509 -16.84681 -16.70102 -16.55747 -16.34955 -15.91089 -15.43632 -15.26599 -15.07093 -14.67567 -14.49147 -14.35757 -14.08269 -13.91802 -13.74382 -13.55691 -13.01968 -12.90800 -12.80336 -12.74188 -12.68646 -12.55182 -12.37704 -12.30685 -12.20472 -11.98950 -11.91522 -11.70226 -11.51063 -11.49604 -11.12816 -11.02230 -10.87994 -10.70921 -10.50154 -10.48184 -9.97453 -8.13063 -6.21268 0.52529 1.42820 1.43142 1.45304 1.52520 1.78825 1.93160 2.09436 2.35008 2.46897 2.89782 3.21050 3.51425 3.66132 3.87099 4.02907 4.10234 4.12702 4.21999 4.25575 4.34782 4.57468 4.65125 4.71120 4.72252 4.74593 4.76550 4.82245 4.88512 4.92856 4.99389 5.03922 5.13474 5.14791 5.15138 5.31028 5.44025 5.48160 5.52032 5.53066 5.56593 5.62420 5.81804 5.82452 5.87740 5.90881 6.31088 6.39486 6.71254 6.94141 7.12114 7.41349 7.46595 8.99161 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033959 B = 0.001676 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.313974 B =16706.665517 C =16862.991612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.265 1.265 13 C 0.141 3.859 14 N -0.712 5.712 15 C 0.498 3.502 16 O -0.595 6.595 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.104 4.104 20 C 0.128 3.872 21 C -0.151 4.151 22 N -0.695 5.695 23 C 0.706 3.294 24 O -0.584 6.584 25 N -0.677 5.677 26 C 0.525 3.475 27 O -0.487 6.487 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.074 0.926 34 H -0.018 1.018 35 H -0.015 1.015 36 H 0.259 0.741 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.414 0.586 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.109 0.891 49 H 0.454 0.546 50 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 6.958 28.842 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.066 4.066 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.017 3.983 14 N -0.365 5.365 15 C 0.287 3.713 16 O -0.476 6.476 17 C -0.167 4.167 18 C -0.152 4.152 19 C -0.142 4.142 20 C 0.037 3.963 21 C -0.209 4.209 22 N -0.361 5.361 23 C 0.405 3.595 24 O -0.461 6.461 25 N -0.348 5.348 26 C 0.311 3.689 27 O -0.356 6.356 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.001 0.999 35 H 0.003 0.997 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.253 0.747 40 H 0.149 0.851 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.143 0.857 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.128 0.872 49 H 0.301 0.699 50 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -7.753 6.219 28.870 30.533 hybrid contribution 0.508 0.153 -1.126 1.245 sum -7.245 6.372 27.743 29.373 Atomic orbital electron populations 1.21687 0.93306 1.00961 1.01816 1.20711 0.96909 0.96236 0.92725 1.21695 0.99716 0.94678 1.01793 1.18981 0.94103 0.94209 0.92589 1.21574 1.30452 1.12118 0.91043 0.90807 1.25982 0.95706 0.95898 1.02829 1.70116 1.38769 1.25000 1.24125 0.85576 0.78994 0.78701 0.78216 1.19155 1.21837 1.19021 1.21130 0.97386 0.95361 0.84452 1.46033 1.53367 1.32201 1.04888 1.21648 0.79470 0.84301 0.85929 1.90707 1.40201 1.29066 1.87588 1.21693 1.04582 1.00863 0.89580 1.21448 1.01418 1.00044 0.92250 1.21796 1.04305 0.98984 0.89108 1.21520 0.89338 0.97387 0.88028 1.22116 1.05039 0.89997 1.03725 1.45567 1.08532 1.59537 1.22421 1.15920 0.81806 0.78880 0.82863 1.91051 1.86062 1.46204 1.22802 1.44379 1.11495 1.55127 1.23797 1.21251 0.92390 0.75470 0.79800 1.90890 1.54433 1.46634 1.43684 0.90663 0.92687 0.94525 0.94809 0.92628 0.90752 0.99927 0.99705 0.93217 0.94355 0.93904 0.74726 0.85070 0.86654 0.92792 0.90823 0.90013 0.85685 0.90363 0.91597 0.87198 0.69865 0.72065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 2 C -0.07 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 4 C 0.04 1.97 4.04 29.85 0.12 2.09 16 5 C -0.51 -27.32 7.65 25.60 0.20 -27.12 16 6 H 0.07 3.63 5.68 -2.91 -0.02 3.62 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -57.18 13.29 21.44 0.28 -56.89 16 9 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.14 4.93 4.56 86.38 0.39 5.33 16 14 N -0.71 -17.58 4.96 -463.07 -2.30 -19.88 16 15 C 0.50 12.54 7.83 87.65 0.69 13.23 16 16 O -0.59 -21.58 15.98 -3.03 -0.05 -21.62 16 17 C -0.13 -1.58 5.70 29.85 0.17 -1.41 16 18 C -0.11 -1.57 3.88 30.60 0.12 -1.46 16 19 C -0.10 -0.62 4.69 30.60 0.14 -0.47 16 20 C 0.13 1.05 1.10 2.98 0.00 1.06 16 21 C -0.15 -1.03 8.55 71.98 0.62 -0.41 16 22 N -0.70 -4.56 5.90 -439.83 -2.60 -7.16 16 23 C 0.71 9.74 8.99 179.44 1.61 11.35 16 24 O -0.58 -12.59 18.04 -3.85 -0.07 -12.66 16 25 N -0.68 -8.55 5.70 -441.12 -2.52 -11.07 16 26 C 0.52 7.87 7.28 87.94 0.64 8.51 16 27 O -0.49 -11.20 16.15 -2.89 -0.05 -11.25 16 28 H 0.07 1.68 6.86 -2.39 -0.02 1.67 16 29 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 33 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 34 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 7.25 6.16 -92.71 -0.57 6.68 16 40 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 1.17 6.12 -2.39 -0.01 1.16 16 43 H 0.07 1.14 6.42 -2.39 -0.02 1.12 16 44 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.08 0.84 6.49 -2.39 -0.02 0.82 16 47 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 49 H 0.45 0.59 8.96 -92.71 -0.83 -0.24 16 50 H 0.44 4.42 8.96 -92.71 -0.83 3.59 16 Total: -1.00 -82.98 399.03 -0.21 -83.19 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -1.24 Total: 10.34 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 6.30 Total: 1.71 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -7.12 Total: -94.99 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.16 Total: -45.53 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -82.98 -0.21 -83.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325221497.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.040 kcal (2) G-P(sol) polarization free energy of solvation -82.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds