Wall clock time and date at job start Sat Apr 11 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99858 * 2 1 4 4 C 1.52997 * 109.47466 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46961 * 120.00471 * 3 2 1 6 6 C 1.53002 * 109.47628 * 59.99679 * 5 3 2 7 7 C 1.50706 * 109.47178 * 239.99734 * 3 2 1 8 8 O 1.21282 * 119.99865 * 0.02562 * 7 3 2 9 9 N 1.34774 * 120.00164 * 180.02562 * 7 3 2 10 10 C 1.46496 * 120.00339 * 180.02562 * 9 7 3 11 11 C 1.52992 * 109.47337 * 179.97438 * 10 9 7 12 12 O 1.42902 * 112.93768 * 53.43864 * 11 10 9 13 13 C 1.53933 * 113.73704 * 281.72852 * 11 10 9 14 14 N 1.47969 * 86.18244 * 221.92075 * 13 11 10 15 15 C 1.46897 * 110.99813 * 137.57930 * 14 13 11 16 16 C 1.50697 * 109.47056 * 70.64321 * 15 14 13 17 17 O 1.21292 * 120.00070 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00109 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99991 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99802 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00101 * 180.02562 * 19 18 16 22 22 N 1.31420 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00376 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47060 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47016 * 119.99716 * 23 21 19 26 26 H 1.48494 * 109.47360 * 240.00133 * 23 21 19 27 27 C 1.47961 * 90.76228 * 24.68872 * 14 13 11 28 28 H 1.07999 * 120.00529 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99900 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99900 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 32 32 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 33 33 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47362 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.46716 * 299.99650 * 5 3 2 36 36 H 1.09001 * 109.47142 * 180.02562 * 6 5 3 37 37 H 1.08996 * 109.46698 * 300.00222 * 6 5 3 38 38 H 1.09002 * 109.46838 * 59.99718 * 6 5 3 39 39 H 0.97005 * 119.99795 * 359.97438 * 9 7 3 40 40 H 1.08996 * 109.46956 * 300.00500 * 10 9 7 41 41 H 1.09001 * 109.47062 * 59.99678 * 10 9 7 42 42 H 0.96698 * 113.99883 * 309.66135 * 12 11 10 43 43 H 1.09003 * 113.75676 * 336.23360 * 13 11 10 44 44 H 1.08995 * 113.75905 * 107.60531 * 13 11 10 45 45 H 1.09004 * 109.46674 * 190.63953 * 15 14 13 46 46 H 1.09000 * 109.47617 * 310.64156 * 15 14 13 47 47 H 0.96992 * 119.99914 * 359.97438 * 18 16 15 48 48 H 0.96995 * 120.00126 * 180.02562 * 22 21 19 49 49 H 1.08999 * 113.76341 * 220.99777 * 27 14 13 50 50 H 1.08995 * 113.76062 * 89.62392 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3861 1.2492 6 6 3.9374 0.2231 1.2492 7 6 2.9299 1.3849 -1.2305 8 8 2.9347 0.4721 -2.0290 9 7 3.6995 2.4707 -1.4435 10 6 4.5413 2.5486 -2.6399 11 6 5.3063 3.8735 -2.6398 12 8 6.0385 4.0937 -1.4325 13 6 4.4573 5.0793 -3.0810 14 7 5.6457 5.5085 -3.8511 15 6 5.2622 5.9961 -5.1826 16 6 4.5491 7.3168 -5.0479 17 8 4.3769 7.8038 -3.9504 18 7 4.1028 7.9569 -6.1468 19 6 3.4545 9.1588 -6.0241 20 1 3.3012 9.5924 -5.0469 21 6 2.9939 9.8184 -7.1569 22 7 3.1800 9.2906 -8.3460 23 14 2.1100 11.4556 -6.9899 24 1 2.0287 11.8301 -5.5552 25 1 2.8590 12.5005 -7.7331 26 1 0.7392 11.3373 -7.5485 27 6 6.1316 4.1126 -3.9172 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 0.4429 2.4101 0.8908 32 1 0.4423 2.4105 -0.8891 33 1 1.6143 3.4120 0.0011 34 1 3.4878 2.3302 1.2495 35 1 2.3164 1.3283 2.1392 36 1 4.5637 0.2807 2.1394 37 1 3.3923 -0.7208 1.2492 38 1 4.5640 0.2809 0.3592 39 1 3.6953 3.2009 -0.8050 40 1 5.2492 1.7198 -2.6406 41 1 3.9143 2.4915 -3.5297 42 1 5.5159 3.9729 -0.6280 43 1 3.6039 4.8110 -3.7039 44 1 4.1952 5.7536 -2.2658 45 1 6.1558 6.1263 -5.7931 46 1 4.5998 5.2724 -5.6578 47 1 4.2408 7.5677 -7.0244 48 1 2.8588 9.7512 -9.1368 49 1 7.2071 4.0144 -3.7699 50 1 5.7678 3.5616 -4.7844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325259134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:12 Heat of formation + Delta-G solvation = -63.777570 kcal Electronic energy + Delta-G solvation = -30130.287275 eV Core-core repulsion = 25966.444981 eV Total energy + Delta-G solvation = -4163.842294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.00139 -40.19299 -37.99250 -36.95807 -35.85501 -34.54259 -33.90165 -32.46250 -31.31246 -30.52177 -29.71722 -27.47859 -26.18794 -25.37354 -24.77653 -23.19562 -22.54624 -21.17939 -20.04372 -19.39909 -18.99404 -17.89570 -17.51784 -16.67068 -16.54503 -16.05180 -15.86250 -15.55565 -15.42025 -15.12347 -14.75370 -14.61491 -14.30687 -14.18658 -13.79792 -13.66943 -13.41511 -13.11461 -13.01679 -12.93671 -12.65177 -12.35563 -12.29826 -12.19956 -12.06463 -11.90112 -11.67414 -11.51397 -11.32162 -11.27239 -11.05882 -10.90042 -10.76630 -10.36222 -10.24942 -10.08142 -9.97215 -9.63784 -9.53485 -9.40400 -8.68322 -8.25731 -7.98554 -6.43798 -3.84720 1.91702 2.38228 2.87070 3.14533 3.25228 3.32234 3.65504 3.86929 3.97236 4.13427 4.18215 4.20983 4.31297 4.43618 4.52234 4.62700 4.83248 4.85332 4.95322 5.08387 5.15093 5.17170 5.21540 5.23301 5.26352 5.40992 5.44860 5.47130 5.53560 5.57339 5.61687 5.66052 5.67354 5.76297 5.77862 5.82138 5.89481 6.03213 6.11512 6.22628 6.29933 6.43211 6.56135 7.08630 7.13829 7.40196 7.53255 7.92078 8.03531 8.58939 9.15787 9.51740 10.03213 10.74036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.002294 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.827753 B =12203.473930 C =13155.115134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 C -0.053 4.053 4 C -0.147 4.147 5 C -0.107 4.107 6 C -0.158 4.158 7 C 0.531 3.469 8 O -0.533 6.533 9 N -0.728 5.728 10 C 0.101 3.899 11 C 0.088 3.912 12 O -0.521 6.521 13 C 0.000 4.000 14 N -0.440 5.440 15 C 0.007 3.993 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.018 3.982 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.398 0.602 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.370 0.630 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.100 0.900 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -18.991 16.139 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.143 4.143 3 C -0.056 4.056 4 C -0.205 4.205 5 C -0.145 4.145 6 C -0.215 4.215 7 C 0.317 3.683 8 O -0.408 6.408 9 N -0.381 5.381 10 C -0.023 4.023 11 C 0.045 3.955 12 O -0.325 6.325 13 C -0.129 4.129 14 N -0.162 5.162 15 C -0.125 4.125 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.112 4.112 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.217 0.783 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.119 0.881 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.197 -18.579 15.901 24.455 hybrid contribution -1.353 0.282 -0.557 1.490 sum -1.550 -18.297 15.344 23.930 Atomic orbital electron populations 1.23998 0.95902 1.02350 1.00694 1.22472 0.95513 0.96564 0.99703 1.19988 0.95595 0.96198 0.93835 1.21982 0.98893 0.96240 1.03353 1.21573 0.97276 0.99608 0.96047 1.21858 0.99038 0.98527 1.02067 1.20379 0.79369 0.81558 0.86977 1.90711 1.65594 1.37699 1.46845 1.45902 1.45457 1.21193 1.25580 1.22030 0.93704 0.97982 0.88615 1.23053 0.92977 0.91996 0.87439 1.86638 1.39033 1.92654 1.14167 1.24517 0.93457 0.95200 0.99755 1.68475 1.19711 1.15942 1.12083 1.22518 1.00481 0.97231 0.92299 1.19649 0.84826 0.87086 0.85527 1.90520 1.61219 1.68411 1.26118 1.41880 1.50643 1.20176 1.07422 1.19738 1.31674 0.96267 0.95078 0.87896 1.25269 0.98143 0.99954 0.94630 1.69621 1.47011 1.39778 0.97886 0.85801 0.78692 0.81226 0.78638 1.19224 1.20702 1.20765 1.24124 1.02051 0.90999 0.94010 0.88216 0.87823 0.86761 0.90795 0.91454 0.91615 0.91197 0.90426 0.92157 0.92116 0.92633 0.76722 0.90324 0.90154 0.78255 0.90849 0.88287 0.88899 0.92747 0.77490 0.91902 0.88127 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 13.70 29.02 0.40 -1.06 16 2 C -0.12 -1.05 7.29 -36.03 -0.26 -1.32 16 3 C -0.05 -0.41 0.63 -156.81 -0.10 -0.51 16 4 C -0.15 -0.98 7.02 37.16 0.26 -0.72 16 5 C -0.11 -0.63 4.88 -26.73 -0.13 -0.76 16 6 C -0.16 -1.04 9.41 37.16 0.35 -0.69 16 7 C 0.53 5.51 5.21 -10.98 -0.06 5.45 16 8 O -0.53 -7.65 16.03 5.56 0.09 -7.56 16 9 N -0.73 -6.31 5.12 -60.30 -0.31 -6.61 16 10 C 0.10 1.01 5.28 -4.05 -0.02 0.99 16 11 C 0.09 1.00 1.52 -89.69 -0.14 0.86 16 12 O -0.52 -5.95 13.50 -35.23 -0.48 -6.42 16 13 C 0.00 0.00 6.16 -2.76 -0.02 -0.02 16 14 N -0.44 -7.31 5.95 -239.60 -1.43 -8.74 16 15 C 0.01 0.12 5.31 -4.98 -0.03 0.09 16 16 C 0.44 10.49 7.59 -10.99 -0.08 10.41 16 17 O -0.58 -15.63 15.12 5.55 0.08 -15.55 16 18 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 27 C 0.02 0.22 7.38 -2.76 -0.02 0.20 16 28 H 0.10 0.66 8.06 -52.49 -0.42 0.23 16 29 H 0.10 0.70 5.69 -52.49 -0.30 0.40 16 30 H 0.11 1.02 7.00 -52.49 -0.37 0.65 16 31 H 0.07 0.39 7.50 -51.93 -0.39 0.01 16 32 H 0.07 0.52 7.50 -51.93 -0.39 0.13 16 33 H 0.06 0.38 7.57 -51.93 -0.39 -0.01 16 34 H 0.07 0.32 7.56 -51.93 -0.39 -0.07 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.41 6.62 -51.93 -0.34 0.07 16 38 H 0.05 0.45 7.22 -51.93 -0.37 0.08 16 39 H 0.40 2.58 6.15 -40.82 -0.25 2.33 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 42 H 0.37 2.74 7.61 45.56 0.35 3.09 16 43 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 44 H 0.10 1.61 8.09 -51.93 -0.42 1.19 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -35.04 403.26 -7.66 -42.70 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -7.26 Total: 13.34 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.09 Total: 4.96 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -1.07 Total: -53.54 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.30 Total: -29.54 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.04 -7.66 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325259134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.080 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds