Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99858 * 2 1 4 4 C 1.52997 * 109.47466 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46961 * 120.00471 * 3 2 1 6 6 C 1.53002 * 109.47628 * 59.99679 * 5 3 2 7 7 C 1.50706 * 109.47178 * 239.99734 * 3 2 1 8 8 O 1.21282 * 119.99865 * 0.02562 * 7 3 2 9 9 N 1.34774 * 120.00164 * 180.02562 * 7 3 2 10 10 C 1.46496 * 120.00339 * 180.02562 * 9 7 3 11 11 C 1.52992 * 109.47337 * 179.97438 * 10 9 7 12 12 O 1.42902 * 112.93768 * 53.43864 * 11 10 9 13 13 C 1.53933 * 113.73704 * 281.72852 * 11 10 9 14 14 N 1.47969 * 86.18244 * 221.92075 * 13 11 10 15 15 C 1.46897 * 110.99813 * 137.57930 * 14 13 11 16 16 C 1.50697 * 109.47056 * 70.64321 * 15 14 13 17 17 O 1.21292 * 120.00070 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00109 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99991 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99802 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00101 * 180.02562 * 19 18 16 22 22 N 1.31420 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00376 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47060 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47016 * 119.99716 * 23 21 19 26 26 H 1.48494 * 109.47360 * 240.00133 * 23 21 19 27 27 C 1.47961 * 90.76228 * 24.68872 * 14 13 11 28 28 H 1.07999 * 120.00529 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99900 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99900 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 32 32 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 33 33 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47362 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.46716 * 299.99650 * 5 3 2 36 36 H 1.09001 * 109.47142 * 180.02562 * 6 5 3 37 37 H 1.08996 * 109.46698 * 300.00222 * 6 5 3 38 38 H 1.09002 * 109.46838 * 59.99718 * 6 5 3 39 39 H 0.97005 * 119.99795 * 359.97438 * 9 7 3 40 40 H 1.08996 * 109.46956 * 300.00500 * 10 9 7 41 41 H 1.09001 * 109.47062 * 59.99678 * 10 9 7 42 42 H 0.96698 * 113.99883 * 309.66135 * 12 11 10 43 43 H 1.09003 * 113.75676 * 336.23360 * 13 11 10 44 44 H 1.08995 * 113.75905 * 107.60531 * 13 11 10 45 45 H 1.09004 * 109.46674 * 190.63953 * 15 14 13 46 46 H 1.09000 * 109.47617 * 310.64156 * 15 14 13 47 47 H 0.96992 * 119.99914 * 359.97438 * 18 16 15 48 48 H 0.96995 * 120.00126 * 180.02562 * 22 21 19 49 49 H 1.08999 * 113.76341 * 220.99777 * 27 14 13 50 50 H 1.08995 * 113.76062 * 89.62392 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3861 1.2492 6 6 3.9374 0.2231 1.2492 7 6 2.9299 1.3849 -1.2305 8 8 2.9347 0.4721 -2.0290 9 7 3.6995 2.4707 -1.4435 10 6 4.5413 2.5486 -2.6399 11 6 5.3063 3.8735 -2.6398 12 8 6.0385 4.0937 -1.4325 13 6 4.4573 5.0793 -3.0810 14 7 5.6457 5.5085 -3.8511 15 6 5.2622 5.9961 -5.1826 16 6 4.5491 7.3168 -5.0479 17 8 4.3769 7.8038 -3.9504 18 7 4.1028 7.9569 -6.1468 19 6 3.4545 9.1588 -6.0241 20 1 3.3012 9.5924 -5.0469 21 6 2.9939 9.8184 -7.1569 22 7 3.1800 9.2906 -8.3460 23 14 2.1100 11.4556 -6.9899 24 1 2.0287 11.8301 -5.5552 25 1 2.8590 12.5005 -7.7331 26 1 0.7392 11.3373 -7.5485 27 6 6.1316 4.1126 -3.9172 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 0.4429 2.4101 0.8908 32 1 0.4423 2.4105 -0.8891 33 1 1.6143 3.4120 0.0011 34 1 3.4878 2.3302 1.2495 35 1 2.3164 1.3283 2.1392 36 1 4.5637 0.2807 2.1394 37 1 3.3923 -0.7208 1.2492 38 1 4.5640 0.2809 0.3592 39 1 3.6953 3.2009 -0.8050 40 1 5.2492 1.7198 -2.6406 41 1 3.9143 2.4915 -3.5297 42 1 5.5159 3.9729 -0.6280 43 1 3.6039 4.8110 -3.7039 44 1 4.1952 5.7536 -2.2658 45 1 6.1558 6.1263 -5.7931 46 1 4.5998 5.2724 -5.6578 47 1 4.2408 7.5677 -7.0244 48 1 2.8588 9.7512 -9.1368 49 1 7.2071 4.0144 -3.7699 50 1 5.7678 3.5616 -4.7844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325259134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -93.659381 kcal Electronic energy + Delta-G solvation = -30131.583048 eV Core-core repulsion = 25966.444981 eV Total energy + Delta-G solvation = -4165.138067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.94123 -41.16480 -39.75919 -37.68444 -36.93911 -35.90645 -35.39717 -33.31776 -33.01300 -31.62515 -30.48165 -28.61304 -27.27581 -26.80333 -25.78934 -24.06227 -23.51070 -21.93271 -21.05573 -21.03168 -20.01520 -19.75593 -18.25047 -17.91907 -17.44330 -17.29489 -16.76961 -16.66361 -16.60140 -16.48663 -15.92454 -15.64284 -15.54121 -15.22194 -15.06072 -14.75720 -14.62580 -14.16956 -14.03108 -13.70994 -13.53621 -13.48142 -13.39016 -13.25660 -12.97980 -12.94446 -12.87079 -12.72787 -12.47920 -12.42299 -12.20805 -12.13196 -11.84355 -11.79154 -11.52381 -11.44480 -10.97476 -10.85783 -10.36152 -10.29939 -10.21882 -10.03219 -9.69486 -8.48379 -5.97164 1.28922 1.35184 1.40579 1.54682 1.58823 2.02586 2.12425 2.27298 2.66455 2.91840 3.18223 3.23824 3.32632 3.52094 3.59181 3.70337 3.89539 3.97327 4.05904 4.19870 4.27326 4.33492 4.40391 4.41588 4.44797 4.54577 4.58850 4.61624 4.66130 4.67309 4.74063 4.77129 4.93448 4.96164 5.02843 5.08173 5.16388 5.24627 5.25899 5.35916 5.38805 5.40024 5.69947 5.82636 5.83846 6.03553 6.39054 6.58071 6.66681 7.10938 7.14993 7.53833 8.09281 8.69314 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.002294 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.827753 B =12203.473930 C =13155.115134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C -0.048 4.048 4 C -0.147 4.147 5 C -0.105 4.105 6 C -0.157 4.157 7 C 0.529 3.471 8 O -0.577 6.577 9 N -0.718 5.718 10 C 0.111 3.889 11 C 0.114 3.886 12 O -0.533 6.533 13 C -0.005 4.005 14 N -0.473 5.473 15 C 0.019 3.981 16 C 0.441 3.559 17 O -0.617 6.617 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.020 3.980 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.410 0.590 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.388 0.612 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.107 0.893 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -19.293 16.785 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.160 4.160 3 C -0.051 4.051 4 C -0.205 4.205 5 C -0.142 4.142 6 C -0.214 4.214 7 C 0.317 3.683 8 O -0.456 6.456 9 N -0.371 5.371 10 C -0.014 4.014 11 C 0.071 3.929 12 O -0.340 6.340 13 C -0.134 4.134 14 N -0.196 5.196 15 C -0.113 4.113 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.108 4.108 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.247 0.753 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.238 0.762 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.343 -18.882 16.562 25.118 hybrid contribution -1.281 0.340 -0.709 1.503 sum -1.624 -18.541 15.853 24.449 Atomic orbital electron populations 1.24173 0.95704 1.03180 0.99497 1.22532 0.95964 0.96664 1.00846 1.19999 0.95581 0.96275 0.93274 1.22013 0.98786 0.96111 1.03555 1.21617 0.97104 0.99987 0.95513 1.21845 0.99097 0.98726 1.01731 1.20892 0.79176 0.80974 0.87249 1.90688 1.67106 1.39309 1.48519 1.45812 1.44721 1.21238 1.25353 1.21856 0.93604 0.97025 0.88934 1.22695 0.91763 0.91006 0.87394 1.86607 1.39744 1.92669 1.14961 1.24497 0.93453 0.96302 0.99140 1.68454 1.20734 1.18904 1.11481 1.22411 1.00826 0.94202 0.93829 1.20701 0.83594 0.88507 0.84370 1.90487 1.62394 1.69928 1.27498 1.41956 1.51146 1.19962 1.08137 1.19675 1.33847 0.97980 0.94552 0.90372 1.26048 0.98273 1.02976 0.94059 1.69679 1.47190 1.40963 0.98356 0.84874 0.77998 0.77198 0.78298 1.19753 1.19636 1.19534 1.24252 1.02631 0.88597 0.95357 0.87527 0.86906 0.87818 0.89071 0.92778 0.90644 0.89569 0.88952 0.90891 0.92725 0.94445 0.75308 0.90047 0.90743 0.76248 0.91000 0.90528 0.87247 0.90214 0.77032 0.91299 0.87478 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 13.70 67.78 0.93 -1.74 16 2 C -0.14 -2.33 7.29 25.65 0.19 -2.14 16 3 C -0.05 -0.69 0.63 -53.67 -0.03 -0.72 16 4 C -0.15 -1.71 7.02 71.98 0.51 -1.21 16 5 C -0.10 -1.01 4.88 30.59 0.15 -0.86 16 6 C -0.16 -1.89 9.41 71.98 0.68 -1.22 16 7 C 0.53 10.61 5.21 87.66 0.46 11.06 16 8 O -0.58 -16.62 16.03 -3.04 -0.05 -16.67 16 9 N -0.72 -11.52 5.12 -463.08 -2.37 -13.89 16 10 C 0.11 2.05 5.28 86.38 0.46 2.51 16 11 C 0.11 2.41 1.52 -10.15 -0.02 2.39 16 12 O -0.53 -11.20 13.50 -148.98 -2.01 -13.21 16 13 C 0.00 -0.13 6.16 86.40 0.53 0.40 16 14 N -0.47 -15.21 5.95 -915.16 -5.44 -20.65 16 15 C 0.02 0.65 5.31 85.56 0.45 1.10 16 16 C 0.44 21.06 7.59 87.66 0.67 21.72 16 17 O -0.62 -34.16 15.12 -3.07 -0.05 -34.20 16 18 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 19 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 22 N -0.92 -49.77 13.05 21.66 0.28 -49.48 16 23 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 C 0.02 0.45 7.38 86.41 0.64 1.09 16 28 H 0.11 1.31 8.06 -2.91 -0.02 1.29 16 29 H 0.11 1.36 5.69 -2.91 -0.02 1.34 16 30 H 0.10 1.88 7.00 -2.91 -0.02 1.86 16 31 H 0.09 0.75 7.50 -2.39 -0.02 0.74 16 32 H 0.05 0.78 7.50 -2.39 -0.02 0.76 16 33 H 0.07 0.72 7.57 -2.38 -0.02 0.70 16 34 H 0.09 0.55 7.56 -2.39 -0.02 0.53 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.72 6.62 -2.39 -0.02 0.70 16 38 H 0.04 0.58 7.22 -2.39 -0.02 0.57 16 39 H 0.41 4.58 6.15 -92.70 -0.57 4.01 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 42 H 0.39 4.94 7.61 -74.06 -0.56 4.38 16 43 H 0.07 2.06 7.67 -2.39 -0.02 2.05 16 44 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.08 2.33 7.69 -2.39 -0.02 2.32 16 47 H 0.40 19.36 7.90 -92.71 -0.73 18.62 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 49 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.11 1.91 7.75 -2.39 -0.02 1.89 16 Total: -1.00 -76.98 403.26 -3.25 -80.23 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.89 Total: 40.05 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.88 Total: 14.10 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -9.16 Total: -115.24 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -2.11 Total: -64.09 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -76.98 -3.25 -80.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325259134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.429 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds