Wall clock time and date at job start Sat Apr 11 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99985 * 2 1 4 4 C 1.53002 * 109.47083 * 239.99781 * 3 2 1 5 5 C 1.52996 * 109.47436 * 119.99857 * 3 2 1 6 6 C 1.52999 * 109.47323 * 59.99821 * 5 3 2 7 7 C 1.50705 * 109.47277 * 359.97438 * 3 2 1 8 8 O 1.21277 * 120.00036 * 119.99794 * 7 3 2 9 9 N 1.34783 * 119.99882 * 300.00183 * 7 3 2 10 10 C 1.46494 * 120.00239 * 179.97438 * 9 7 3 11 11 C 1.52996 * 109.47237 * 180.02562 * 10 9 7 12 12 O 1.42895 * 113.38379 * 51.91843 * 11 10 9 13 13 C 1.53517 * 114.16834 * 185.00037 * 11 10 9 14 14 N 1.47479 * 87.99753 * 139.69722 * 13 11 10 15 15 C 1.46893 * 111.00130 * 221.26429 * 14 13 11 16 16 C 1.50699 * 109.47365 * 170.00095 * 15 14 13 17 17 O 1.21298 * 119.99843 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00361 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99875 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00336 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00143 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47260 * 89.99665 * 23 21 19 25 25 H 1.48495 * 109.47390 * 210.00173 * 23 21 19 26 26 H 1.48499 * 109.47230 * 330.00169 * 23 21 19 27 27 C 1.47486 * 87.83624 * 332.95820 * 14 13 11 28 28 H 1.08008 * 120.00080 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00321 * 180.02562 * 1 2 3 30 30 H 1.07990 * 120.00073 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47143 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47018 * 299.99940 * 4 3 2 33 33 H 1.09003 * 109.46806 * 60.00456 * 4 3 2 34 34 H 1.08997 * 109.47549 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47165 * 299.99783 * 5 3 2 36 36 H 1.08999 * 109.47031 * 59.99880 * 6 5 3 37 37 H 1.08993 * 109.47407 * 180.02562 * 6 5 3 38 38 H 1.09005 * 109.47120 * 300.00856 * 6 5 3 39 39 H 0.97003 * 119.99748 * 359.97438 * 9 7 3 40 40 H 1.08997 * 109.47137 * 59.99546 * 10 9 7 41 41 H 1.09004 * 109.46597 * 300.00374 * 10 9 7 42 42 H 0.96692 * 114.00048 * 313.07846 * 12 11 10 43 43 H 1.09002 * 113.47888 * 24.90080 * 13 11 10 44 44 H 1.09003 * 113.47419 * 254.49414 * 13 11 10 45 45 H 1.08996 * 109.47219 * 289.99944 * 15 14 13 46 46 H 1.09003 * 109.47111 * 50.00095 * 15 14 13 47 47 H 0.96998 * 120.00051 * 0.02562 * 18 16 15 48 48 H 0.97008 * 119.99955 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.47573 * 141.77409 * 27 14 13 50 50 H 1.08996 * 113.47515 * 272.18523 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 6 2.9431 1.3863 1.2492 6 6 3.9373 0.2234 1.2493 7 6 1.0842 2.4506 -0.0006 8 8 1.0889 3.2530 0.9088 9 7 0.2030 2.5833 -1.0119 10 6 -0.7493 3.6965 -1.0123 11 6 -1.6288 3.6148 -2.2615 12 8 -2.2408 2.3362 -2.4417 13 6 -2.5882 4.8008 -2.4334 14 7 -2.2835 4.7716 -3.8761 15 6 -2.1260 6.1315 -4.4086 16 6 -1.5789 6.0616 -5.8110 17 8 -1.3429 4.9848 -6.3170 18 7 -1.3508 7.1957 -6.5027 19 6 -0.8525 7.1320 -7.7784 20 1 -0.6424 6.1732 -8.2289 21 6 -0.6169 8.3012 -8.4913 22 7 -0.1388 8.2402 -9.7138 23 14 -0.9796 9.9596 -7.7118 24 1 0.2283 10.4457 -6.9976 25 1 -1.3543 10.9323 -8.7694 26 1 -2.1010 9.8192 -6.7486 27 6 -0.9754 4.1842 -3.5310 28 1 -0.5401 0.9354 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9352 0.0004 31 1 3.4878 2.3303 -1.2495 32 1 3.6515 0.5576 -1.2492 33 1 2.3164 1.3284 -2.1392 34 1 3.4877 2.3304 1.2494 35 1 2.3164 1.3286 2.1392 36 1 4.5640 0.2810 0.3593 37 1 4.5637 0.2809 2.1395 38 1 3.3923 -0.7207 1.2493 39 1 0.1995 1.9417 -1.7394 40 1 -0.2047 4.6406 -1.0120 41 1 -1.3763 3.6385 -0.1225 42 1 -1.6343 1.5910 -2.3329 43 1 -2.2488 5.7096 -1.9363 44 1 -3.6255 4.5570 -2.2036 45 1 -3.0945 6.6313 -4.4210 46 1 -1.4362 6.6914 -3.7770 47 1 -1.5384 8.0568 -6.0977 48 1 0.0260 9.0565 -10.2114 49 1 -0.6457 3.4168 -4.2313 50 1 -0.2054 4.9284 -3.3278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325259135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:15 Heat of formation + Delta-G solvation = -48.881999 kcal Electronic energy + Delta-G solvation = -30176.760085 eV Core-core repulsion = 26013.563712 eV Total energy + Delta-G solvation = -4163.196374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21725 -40.39636 -38.17682 -36.92410 -36.05143 -34.69354 -33.95988 -32.44923 -31.71855 -30.61616 -29.79829 -27.63835 -26.07498 -25.70434 -24.85792 -22.79462 -22.22792 -21.54367 -20.17332 -19.65956 -19.32119 -18.31823 -17.31550 -16.87425 -16.46684 -16.31175 -15.95151 -15.54896 -15.50413 -15.05319 -14.82697 -14.66941 -14.46816 -14.09965 -13.88755 -13.69125 -13.33948 -13.18244 -13.08998 -12.97137 -12.58713 -12.52969 -12.41896 -12.33903 -12.15020 -12.08661 -11.98074 -11.81340 -11.44540 -11.25431 -11.16066 -10.86773 -10.78670 -10.61777 -10.04157 -10.00185 -9.97846 -9.85237 -9.58900 -9.41636 -8.85473 -8.41528 -8.20235 -6.33247 -3.84771 1.79052 2.28022 2.68547 3.00849 3.04544 3.13278 3.60007 3.70291 3.91438 4.05657 4.08182 4.20804 4.23045 4.46702 4.50568 4.59427 4.63226 4.83756 4.96215 4.96582 5.11780 5.14312 5.16725 5.17929 5.28657 5.33875 5.37120 5.46917 5.48694 5.52494 5.54111 5.59633 5.62082 5.70155 5.71468 5.81528 5.88531 5.93547 5.99839 6.01617 6.12884 6.23051 6.41071 6.98542 7.03844 7.35642 7.55407 7.82644 8.11320 8.57376 8.92619 9.39770 9.80113 10.79816 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002279 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.681194 B =12282.939582 C =12892.393071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.051 4.051 4 C -0.143 4.143 5 C -0.096 4.096 6 C -0.155 4.155 7 C 0.529 3.471 8 O -0.533 6.533 9 N -0.729 5.729 10 C 0.103 3.897 11 C 0.087 3.913 12 O -0.517 6.517 13 C 0.012 3.988 14 N -0.429 5.429 15 C 0.003 3.997 16 C 0.453 3.547 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.010 4.010 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.401 0.599 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.371 0.629 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.097 0.903 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -13.232 23.478 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.162 4.162 3 C -0.055 4.055 4 C -0.200 4.200 5 C -0.134 4.134 6 C -0.212 4.212 7 C 0.315 3.685 8 O -0.408 6.408 9 N -0.383 5.383 10 C -0.022 4.022 11 C 0.045 3.955 12 O -0.321 6.321 13 C -0.117 4.117 14 N -0.151 5.151 15 C -0.129 4.129 16 C 0.238 3.762 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.139 4.139 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.237 0.763 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.218 0.782 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.116 0.884 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.752 -13.177 22.962 26.617 hybrid contribution 0.702 1.440 0.571 1.700 sum 3.453 -11.737 23.533 26.524 Atomic orbital electron populations 1.24374 0.96169 1.03278 1.00054 1.22751 0.95709 0.96939 1.00761 1.20036 0.95002 0.91519 0.98901 1.21918 0.99617 1.03397 0.95060 1.21331 0.96910 0.99544 0.95631 1.21899 0.99037 0.98211 1.02092 1.20467 0.80586 0.86102 0.81333 1.90713 1.70516 1.43917 1.35678 1.46143 1.36237 1.30283 1.25676 1.21955 0.90955 0.90775 0.98477 1.22599 0.94183 0.86066 0.92688 1.86646 1.38204 1.13530 1.93720 1.23997 1.01382 0.95125 0.91221 1.68910 1.18752 1.15927 1.11472 1.22585 1.01906 0.91820 0.96631 1.19529 0.84566 0.84955 0.87125 1.90569 1.55094 1.28058 1.70352 1.42213 1.59300 1.06284 1.15271 1.19418 1.38864 0.96929 0.88111 0.86298 1.25040 0.97392 0.98097 0.95652 1.69621 1.43717 1.28953 1.09788 0.86674 0.78873 0.84305 0.79558 1.19662 1.20113 1.19480 1.24496 0.93035 1.00389 0.95991 0.87427 0.87657 0.85904 0.91575 0.90612 0.91829 0.90972 0.91193 0.92174 0.92425 0.92430 0.76311 0.89998 0.90148 0.78152 0.89941 0.88401 0.88707 0.92517 0.79727 0.91595 0.88433 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 13.18 29.02 0.38 -0.89 16 2 C -0.14 -0.88 8.00 -36.02 -0.29 -1.17 16 3 C -0.05 -0.38 0.62 -156.81 -0.10 -0.48 16 4 C -0.14 -0.91 8.00 37.16 0.30 -0.62 16 5 C -0.10 -0.74 4.27 -26.73 -0.11 -0.85 16 6 C -0.16 -0.86 9.30 37.16 0.35 -0.51 16 7 C 0.53 5.25 5.34 -10.98 -0.06 5.19 16 8 O -0.53 -7.27 15.98 5.56 0.09 -7.18 16 9 N -0.73 -6.02 3.49 -60.30 -0.21 -6.23 16 10 C 0.10 0.95 5.36 -4.05 -0.02 0.93 16 11 C 0.09 0.94 1.65 -89.99 -0.15 0.79 16 12 O -0.52 -5.77 13.56 -35.23 -0.48 -6.25 16 13 C 0.01 0.14 7.13 -7.54 -0.05 0.09 16 14 N -0.43 -6.85 6.06 -245.81 -1.49 -8.34 16 15 C 0.00 0.05 5.31 -4.98 -0.03 0.02 16 16 C 0.45 10.31 7.62 -10.99 -0.08 10.23 16 17 O -0.56 -15.05 15.34 5.54 0.08 -14.96 16 18 N -0.59 -14.09 5.09 -10.96 -0.06 -14.14 16 19 C -0.30 -8.61 10.16 -14.93 -0.15 -8.77 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 23 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 27 C -0.01 -0.14 6.14 -7.44 -0.05 -0.18 16 28 H 0.11 0.79 5.18 -52.48 -0.27 0.52 16 29 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 30 H 0.12 0.58 7.00 -52.49 -0.37 0.22 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.38 6.43 -51.93 -0.33 0.05 16 33 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 34 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 35 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.28 6.62 -51.93 -0.34 -0.06 16 39 H 0.40 2.64 6.00 -40.82 -0.25 2.39 16 40 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.37 2.76 7.51 45.56 0.34 3.10 16 43 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 44 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 47 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.10 1.56 8.13 -51.93 -0.42 1.14 16 50 H 0.07 1.00 7.57 -51.93 -0.39 0.60 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -35.96 397.68 -7.31 -43.27 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.14 Total: 13.35 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.16 Total: 4.81 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.98 Total: -53.64 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.30 Total: -28.40 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.96 -7.31 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325259135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.615 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds