Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47408 * 2 1 4 4 C 1.32990 * 120.00298 * 182.98003 * 3 2 1 5 5 C 1.50695 * 120.00184 * 184.42368 * 4 3 2 6 6 C 1.47103 * 120.00119 * 4.41672 * 4 3 2 7 7 O 1.21616 * 119.99460 * 5.12363 * 6 4 3 8 8 N 1.34771 * 120.00223 * 185.12241 * 6 4 3 9 9 C 1.46501 * 120.00159 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47402 * 175.12802 * 9 8 6 11 11 H 1.09003 * 109.54111 * 186.21643 * 10 9 8 12 12 C 1.53087 * 109.50656 * 66.10533 * 10 9 8 13 13 O 1.43017 * 109.25974 * 183.21796 * 12 10 9 14 14 C 1.43021 * 113.73720 * 58.66891 * 13 12 10 15 15 C 1.53101 * 109.25753 * 301.33220 * 14 13 12 16 16 N 1.47008 * 109.50421 * 306.32172 * 10 9 8 17 17 C 1.46906 * 111.00146 * 302.32880 * 16 10 9 18 18 C 1.50701 * 109.46765 * 295.22420 * 17 16 10 19 19 O 1.21289 * 120.00212 * 5.60314 * 18 17 16 20 20 N 1.34779 * 119.99457 * 185.59723 * 18 17 16 21 21 C 1.37108 * 119.99635 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99754 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99887 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47464 * 90.00035 * 25 23 21 27 27 H 1.48506 * 109.46786 * 209.99772 * 25 23 21 28 28 H 1.48503 * 109.47197 * 329.99459 * 25 23 21 29 29 H 1.09001 * 109.47054 * 59.99721 * 1 2 3 30 30 H 1.09005 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47218 * 299.99636 * 1 2 3 32 32 H 1.08997 * 109.47153 * 239.99545 * 2 1 3 33 33 H 1.09001 * 109.47054 * 120.00279 * 2 1 3 34 34 H 1.08004 * 120.00078 * 2.98298 * 3 2 1 35 35 H 1.09005 * 109.46819 * 269.99471 * 5 4 3 36 36 H 1.08998 * 109.47564 * 29.99439 * 5 4 3 37 37 H 1.08997 * 109.47858 * 150.00037 * 5 4 3 38 38 H 0.97000 * 119.99823 * 0.02562 * 8 6 4 39 39 H 1.09001 * 109.46841 * 55.12153 * 9 8 6 40 40 H 1.09009 * 109.47237 * 295.13263 * 9 8 6 41 41 H 1.09002 * 109.50812 * 303.15081 * 12 10 9 42 42 H 1.08997 * 109.51142 * 63.28288 * 12 10 9 43 43 H 1.09000 * 109.50544 * 181.39570 * 14 13 12 44 44 H 1.08997 * 109.53860 * 61.28723 * 14 13 12 45 45 H 1.08998 * 109.50540 * 296.91306 * 15 14 13 46 46 H 1.09000 * 109.50612 * 176.78305 * 15 14 13 47 47 H 1.08991 * 109.47058 * 55.22752 * 17 16 10 48 48 H 1.09002 * 109.46860 * 175.22660 * 17 16 10 49 49 H 0.96997 * 120.00719 * 0.02562 * 20 18 17 50 50 H 0.97010 * 119.99528 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 3.3384 1.6643 -0.0599 5 6 3.8464 3.0795 0.0405 6 6 4.2872 0.5522 -0.2240 7 8 3.8745 -0.5784 -0.3983 8 7 5.6138 0.7863 -0.1812 9 6 6.5587 -0.3212 -0.3452 10 6 7.9866 0.2273 -0.3778 11 1 8.6819 -0.5796 -0.6096 12 6 8.3354 0.8263 0.9872 13 8 9.6424 1.4039 0.9288 14 6 9.7761 2.4267 -0.0620 15 6 9.4418 1.8438 -1.4377 16 7 8.0875 1.2728 -1.4062 17 6 7.7049 0.7522 -2.7256 18 6 8.6900 -0.3052 -3.1532 19 8 9.5590 -0.6689 -2.3893 20 7 8.6051 -0.8467 -4.3845 21 6 9.5009 -1.8090 -4.7734 22 1 10.2748 -2.1328 -4.0931 23 6 9.4137 -2.3669 -6.0429 24 7 8.4724 -1.9725 -6.8707 25 14 10.6338 -3.6785 -6.5724 26 1 10.1040 -5.0197 -6.2176 27 1 10.8386 -3.6000 -8.0412 28 1 11.9288 -3.4586 -5.8797 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.3318 2.2413 0.0487 35 1 3.9043 3.5163 -0.9565 36 1 3.1652 3.6673 0.6557 37 1 4.8372 3.0786 0.4948 38 1 5.9429 1.6880 -0.0418 39 1 6.3484 -0.8430 -1.2788 40 1 6.4546 -1.0143 0.4897 41 1 7.6081 1.5967 1.2432 42 1 8.3176 0.0422 1.7441 43 1 10.8002 2.8000 -0.0639 44 1 9.0911 3.2441 0.1632 45 1 10.1604 1.0628 -1.6864 46 1 9.4868 2.6331 -2.1881 47 1 6.7070 0.3176 -2.6693 48 1 7.7067 1.5653 -3.4515 49 1 7.9103 -0.5556 -4.9955 50 1 8.4118 -2.3618 -7.7572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326618535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -94.771934 kcal Electronic energy + Delta-G solvation = -31033.573493 eV Core-core repulsion = 26868.387183 eV Total energy + Delta-G solvation = -4165.186311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.39456 -39.50843 -37.97069 -36.04910 -35.29990 -34.49919 -33.70959 -32.56133 -31.39289 -30.96823 -28.97677 -27.12828 -26.63015 -25.45575 -23.73442 -23.39890 -22.40867 -21.64122 -20.03414 -19.37255 -19.12176 -17.89662 -16.56936 -16.40297 -16.29020 -16.05173 -15.67664 -15.29732 -14.93824 -14.72072 -14.58098 -14.18537 -14.14329 -14.06734 -13.90428 -13.67348 -13.50423 -13.30629 -13.15795 -12.75111 -12.63475 -12.52036 -11.98113 -11.89143 -11.73972 -11.58198 -11.56753 -11.38116 -11.22366 -11.16808 -10.95002 -10.68549 -10.46157 -10.39688 -10.28065 -9.57907 -9.53122 -9.48373 -9.30014 -9.16707 -8.74928 -8.05573 -7.57414 -6.50343 -3.91894 1.34977 3.11333 3.21778 3.27016 3.28149 3.37672 3.75087 3.95613 4.09734 4.11533 4.59620 4.73908 4.87399 4.95889 4.99137 5.03802 5.14555 5.17297 5.19752 5.23942 5.31215 5.34160 5.43399 5.45721 5.52097 5.56520 5.69225 5.72871 5.77921 5.85070 5.87192 5.90933 5.99395 6.04353 6.07287 6.11938 6.13435 6.30279 6.35707 6.52114 6.56037 6.63943 7.12410 7.16970 7.28802 7.46643 7.68437 7.95128 8.36213 8.49036 9.07405 9.42723 9.92366 10.66009 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.003352 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.978592 B = 8350.873377 C =10468.871053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.069 4.069 4 C -0.194 4.194 5 C -0.112 4.112 6 C 0.545 3.455 7 O -0.542 6.542 8 N -0.712 5.712 9 C 0.129 3.871 10 C 0.016 3.984 11 H 0.110 0.890 12 C 0.076 3.924 13 O -0.382 6.382 14 C 0.069 3.931 15 C -0.002 4.002 16 N -0.506 5.506 17 C 0.037 3.963 18 C 0.404 3.596 19 O -0.593 6.593 20 N -0.552 5.552 21 C -0.304 4.304 22 H 0.103 0.897 23 C 0.025 3.975 24 N -0.896 5.896 25 Si 0.930 3.070 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.405 0.595 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.393 0.607 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 11.740 13.224 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.135 4.135 3 C -0.089 4.089 4 C -0.197 4.197 5 C -0.169 4.169 6 C 0.334 3.666 7 O -0.422 6.422 8 N -0.365 5.365 9 C 0.005 3.995 10 C -0.092 4.092 11 H 0.128 0.872 12 C -0.002 4.002 13 O -0.300 6.300 14 C -0.008 4.008 15 C -0.130 4.130 16 N -0.230 5.230 17 C -0.095 4.095 18 C 0.190 3.810 19 O -0.481 6.481 20 N -0.187 5.187 21 C -0.433 4.433 22 H 0.121 0.879 23 C -0.177 4.177 24 N -0.536 5.536 25 Si 0.757 3.243 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.194 1.194 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.226 0.774 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.287 10.956 13.640 20.295 hybrid contribution 0.609 -0.520 -1.305 1.531 sum -9.678 10.435 12.335 18.833 Atomic orbital electron populations 1.21900 0.96282 1.01771 1.01318 1.20864 0.94482 0.93645 1.04554 1.23674 0.94485 0.98766 0.91978 1.21487 0.94458 0.95389 1.08362 1.20743 1.01337 0.92321 1.02504 1.18418 0.82540 0.88640 0.77025 1.90777 1.78153 1.23606 1.49651 1.45912 1.05300 1.12136 1.73128 1.21374 0.86773 0.88936 1.02459 1.22897 0.96696 0.96861 0.92795 0.87212 1.22610 0.84575 0.97143 0.95852 1.87980 1.31023 1.54178 1.56852 1.22623 1.01356 0.89607 0.87263 1.23045 0.91653 1.00828 0.97484 1.62712 1.25485 1.30697 1.04075 1.22097 0.98970 0.97263 0.91127 1.20960 0.88959 0.87291 0.83819 1.90408 1.39058 1.65784 1.52830 1.42052 1.29161 1.34823 1.12620 1.19716 1.10154 1.14749 0.98714 0.87894 1.25303 0.97752 0.98870 0.95797 1.69615 1.32661 1.43209 1.08160 0.85857 0.80386 0.80418 0.77642 1.20275 1.20827 1.19388 0.92853 0.92575 0.93095 0.88406 0.90198 0.86038 0.91021 0.91443 0.91718 0.75847 0.90702 0.91201 0.93369 0.88832 0.88946 0.93238 0.89269 0.90630 0.88982 0.89309 0.77383 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.85 37.16 0.37 -0.94 16 2 C -0.10 -1.07 4.56 -27.89 -0.13 -1.20 16 3 C -0.07 -0.67 9.25 -36.13 -0.33 -1.00 16 4 C -0.19 -2.04 6.00 -102.85 -0.62 -2.65 16 5 C -0.11 -0.86 9.72 36.00 0.35 -0.51 16 6 C 0.55 7.37 7.69 -12.67 -0.10 7.27 16 7 O -0.54 -9.07 13.16 5.26 0.07 -9.00 16 8 N -0.71 -8.80 5.07 -61.49 -0.31 -9.12 16 9 C 0.13 1.85 4.65 -4.04 -0.02 1.83 16 10 C 0.02 0.25 1.91 -67.61 -0.13 0.12 16 11 H 0.11 2.13 5.63 -51.93 -0.29 1.84 16 12 C 0.08 0.99 6.20 37.20 0.23 1.22 16 13 O -0.38 -5.71 10.83 -35.23 -0.38 -6.09 16 14 C 0.07 0.89 7.01 37.21 0.26 1.15 16 15 C 0.00 -0.03 5.25 -3.71 -0.02 -0.05 16 16 N -0.51 -7.53 4.20 -227.78 -0.96 -8.49 16 17 C 0.04 0.63 5.56 -4.97 -0.03 0.60 16 18 C 0.40 8.95 7.15 -10.98 -0.08 8.87 16 19 O -0.59 -14.67 11.16 5.55 0.06 -14.61 16 20 N -0.55 -13.59 5.29 -10.96 -0.06 -13.64 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 24 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 1.31 6.60 -51.93 -0.34 0.97 16 33 H 0.08 0.95 7.78 -51.93 -0.40 0.55 16 34 H 0.12 0.87 7.99 -52.48 -0.42 0.45 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 37 H 0.06 0.47 6.53 -51.93 -0.34 0.13 16 38 H 0.40 4.37 5.31 -40.82 -0.22 4.15 16 39 H 0.07 1.28 6.63 -51.93 -0.34 0.93 16 40 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 41 H 0.05 0.54 7.09 -51.93 -0.37 0.17 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.74 5.53 -51.93 -0.29 1.46 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 1.54 6.15 -51.93 -0.32 1.22 16 48 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -30.85 391.69 -8.27 -39.12 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -7.81 Total: 16.63 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.48 Total: 6.85 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.60 Total: -54.64 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.25 Total: -29.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.85 -8.27 -39.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326618535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.654 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds