Wall clock time and date at job start Sat Apr 11 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47408 * 2 1 4 4 C 1.32990 * 120.00298 * 182.98003 * 3 2 1 5 5 C 1.50695 * 120.00184 * 184.42368 * 4 3 2 6 6 C 1.47103 * 120.00119 * 4.41672 * 4 3 2 7 7 O 1.21616 * 119.99460 * 5.12363 * 6 4 3 8 8 N 1.34771 * 120.00223 * 185.12241 * 6 4 3 9 9 C 1.46501 * 120.00159 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47402 * 175.12802 * 9 8 6 11 11 H 1.09003 * 109.54111 * 186.21643 * 10 9 8 12 12 C 1.53087 * 109.50656 * 66.10533 * 10 9 8 13 13 O 1.43017 * 109.25974 * 183.21796 * 12 10 9 14 14 C 1.43021 * 113.73720 * 58.66891 * 13 12 10 15 15 C 1.53101 * 109.25753 * 301.33220 * 14 13 12 16 16 N 1.47008 * 109.50421 * 306.32172 * 10 9 8 17 17 C 1.46906 * 111.00146 * 302.32880 * 16 10 9 18 18 C 1.50701 * 109.46765 * 295.22420 * 17 16 10 19 19 O 1.21289 * 120.00212 * 5.60314 * 18 17 16 20 20 N 1.34779 * 119.99457 * 185.59723 * 18 17 16 21 21 C 1.37108 * 119.99635 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99754 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99887 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47464 * 90.00035 * 25 23 21 27 27 H 1.48506 * 109.46786 * 209.99772 * 25 23 21 28 28 H 1.48503 * 109.47197 * 329.99459 * 25 23 21 29 29 H 1.09001 * 109.47054 * 59.99721 * 1 2 3 30 30 H 1.09005 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47218 * 299.99636 * 1 2 3 32 32 H 1.08997 * 109.47153 * 239.99545 * 2 1 3 33 33 H 1.09001 * 109.47054 * 120.00279 * 2 1 3 34 34 H 1.08004 * 120.00078 * 2.98298 * 3 2 1 35 35 H 1.09005 * 109.46819 * 269.99471 * 5 4 3 36 36 H 1.08998 * 109.47564 * 29.99439 * 5 4 3 37 37 H 1.08997 * 109.47858 * 150.00037 * 5 4 3 38 38 H 0.97000 * 119.99823 * 0.02562 * 8 6 4 39 39 H 1.09001 * 109.46841 * 55.12153 * 9 8 6 40 40 H 1.09009 * 109.47237 * 295.13263 * 9 8 6 41 41 H 1.09002 * 109.50812 * 303.15081 * 12 10 9 42 42 H 1.08997 * 109.51142 * 63.28288 * 12 10 9 43 43 H 1.09000 * 109.50544 * 181.39570 * 14 13 12 44 44 H 1.08997 * 109.53860 * 61.28723 * 14 13 12 45 45 H 1.08998 * 109.50540 * 296.91306 * 15 14 13 46 46 H 1.09000 * 109.50612 * 176.78305 * 15 14 13 47 47 H 1.08991 * 109.47058 * 55.22752 * 17 16 10 48 48 H 1.09002 * 109.46860 * 175.22660 * 17 16 10 49 49 H 0.96997 * 120.00719 * 0.02562 * 20 18 17 50 50 H 0.97010 * 119.99528 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 3.3384 1.6643 -0.0599 5 6 3.8464 3.0795 0.0405 6 6 4.2872 0.5522 -0.2240 7 8 3.8745 -0.5784 -0.3983 8 7 5.6138 0.7863 -0.1812 9 6 6.5587 -0.3212 -0.3452 10 6 7.9866 0.2273 -0.3778 11 1 8.6819 -0.5796 -0.6096 12 6 8.3354 0.8263 0.9872 13 8 9.6424 1.4039 0.9288 14 6 9.7761 2.4267 -0.0620 15 6 9.4418 1.8438 -1.4377 16 7 8.0875 1.2728 -1.4062 17 6 7.7049 0.7522 -2.7256 18 6 8.6900 -0.3052 -3.1532 19 8 9.5590 -0.6689 -2.3893 20 7 8.6051 -0.8467 -4.3845 21 6 9.5009 -1.8090 -4.7734 22 1 10.2748 -2.1328 -4.0931 23 6 9.4137 -2.3669 -6.0429 24 7 8.4724 -1.9725 -6.8707 25 14 10.6338 -3.6785 -6.5724 26 1 10.1040 -5.0197 -6.2176 27 1 10.8386 -3.6000 -8.0412 28 1 11.9288 -3.4586 -5.8797 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.3318 2.2413 0.0487 35 1 3.9043 3.5163 -0.9565 36 1 3.1652 3.6673 0.6557 37 1 4.8372 3.0786 0.4948 38 1 5.9429 1.6880 -0.0418 39 1 6.3484 -0.8430 -1.2788 40 1 6.4546 -1.0143 0.4897 41 1 7.6081 1.5967 1.2432 42 1 8.3176 0.0422 1.7441 43 1 10.8002 2.8000 -0.0639 44 1 9.0911 3.2441 0.1632 45 1 10.1604 1.0628 -1.6864 46 1 9.4868 2.6331 -2.1881 47 1 6.7070 0.3176 -2.6693 48 1 7.7067 1.5653 -3.4515 49 1 7.9103 -0.5556 -4.9955 50 1 8.4118 -2.3618 -7.7572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326618535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:37 Heat of formation + Delta-G solvation = -118.083155 kcal Electronic energy + Delta-G solvation = -31034.584344 eV Core-core repulsion = 26868.387183 eV Total energy + Delta-G solvation = -4166.197161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 4.26 seconds Orbital eigenvalues (eV) -41.67995 -40.70029 -39.54490 -37.18706 -36.40786 -35.99048 -35.27860 -33.43612 -33.36644 -32.01173 -30.38145 -27.97293 -27.66580 -27.09990 -25.27472 -24.40108 -23.44081 -22.56139 -21.54543 -20.73986 -20.37423 -19.79949 -17.88115 -17.73564 -17.47858 -17.35972 -16.74904 -16.59571 -16.36276 -16.02681 -15.82878 -15.69666 -15.54740 -15.33399 -15.11738 -14.77759 -14.60820 -14.55362 -14.03712 -13.70947 -13.60737 -13.57206 -13.34275 -13.22993 -13.14471 -12.97457 -12.81194 -12.51897 -12.48944 -12.31648 -12.17552 -12.09966 -11.98134 -11.88292 -11.51634 -11.39307 -11.09051 -10.61966 -10.54452 -10.16080 -10.04748 -9.70843 -9.15219 -8.51482 -6.01473 0.49919 1.31841 1.36816 1.49107 1.93713 2.24451 2.24809 2.36241 2.76463 2.94694 3.14344 3.18412 3.72609 3.77124 3.84984 3.95426 4.01192 4.22331 4.29368 4.31742 4.33263 4.42548 4.45432 4.47274 4.52777 4.57510 4.61932 4.66292 4.66977 4.74609 4.86009 4.91450 4.92991 5.04139 5.15488 5.20586 5.23297 5.26001 5.36047 5.38959 5.45080 5.54249 5.74386 5.75604 5.87897 5.94981 6.21217 6.51604 6.68172 7.05756 7.33454 7.48126 8.02254 8.64169 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.003352 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.978592 B = 8350.873377 C =10468.871053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.062 4.062 4 C -0.203 4.203 5 C -0.108 4.108 6 C 0.536 3.464 7 O -0.583 6.583 8 N -0.698 5.698 9 C 0.140 3.860 10 C 0.023 3.977 11 H 0.064 0.936 12 C 0.079 3.921 13 O -0.402 6.402 14 C 0.071 3.929 15 C -0.003 4.003 16 N -0.483 5.483 17 C 0.049 3.951 18 C 0.408 3.592 19 O -0.618 6.618 20 N -0.568 5.568 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.415 0.585 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.042 0.958 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.394 0.606 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 14.416 14.244 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.206 4.206 5 C -0.165 4.165 6 C 0.327 3.673 7 O -0.465 6.465 8 N -0.352 5.352 9 C 0.015 3.985 10 C -0.086 4.086 11 H 0.082 0.918 12 C 0.002 3.998 13 O -0.321 6.321 14 C -0.006 4.006 15 C -0.131 4.131 16 N -0.206 5.206 17 C -0.083 4.083 18 C 0.195 3.805 19 O -0.506 6.506 20 N -0.204 5.204 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.558 5.558 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.197 1.197 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.174 0.826 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.255 0.745 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.131 0.869 49 H 0.228 0.772 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.470 13.675 14.677 23.108 hybrid contribution 0.966 -1.355 -1.539 2.267 sum -10.504 12.319 13.139 20.850 Atomic orbital electron populations 1.21855 0.94225 1.02030 1.02564 1.20766 0.96274 0.94369 1.02255 1.23945 0.94861 0.98749 0.90557 1.21604 0.94017 0.95812 1.09171 1.20783 1.02091 0.90253 1.03326 1.19074 0.83024 0.89067 0.76137 1.90775 1.78759 1.25557 1.51439 1.45744 1.04779 1.11945 1.72701 1.21075 0.86918 0.89537 1.00994 1.22746 0.95854 0.95692 0.94349 0.91846 1.22686 0.84675 0.98181 0.94245 1.87964 1.31979 1.54908 1.57235 1.22761 1.03164 0.89613 0.85023 1.23065 0.90113 0.99912 0.99999 1.62812 1.25338 1.29675 1.02787 1.22106 0.97372 0.96154 0.92646 1.21999 0.88869 0.87067 0.82578 1.90427 1.40341 1.66524 1.53325 1.42133 1.29327 1.35331 1.13631 1.19635 1.10895 1.16598 0.99179 0.90385 1.26042 0.99311 1.00459 0.95353 1.69675 1.33619 1.44063 1.08477 0.84959 0.77995 0.77873 0.77710 1.19828 1.19369 1.19728 0.91988 0.92949 0.91327 0.91626 0.91910 0.82582 0.90540 0.89250 0.91145 0.74529 0.93895 0.90938 0.90458 0.87904 0.87522 0.90098 0.93974 0.88864 0.88489 0.86934 0.77208 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.85 71.98 0.71 -1.59 16 2 C -0.10 -2.14 4.56 29.85 0.14 -2.00 16 3 C -0.06 -1.06 9.25 24.52 0.23 -0.83 16 4 C -0.20 -3.83 6.00 -18.71 -0.11 -3.95 16 5 C -0.11 -1.24 9.72 71.23 0.69 -0.55 16 6 C 0.54 14.23 7.69 86.57 0.67 14.90 16 7 O -0.58 -20.18 13.16 -4.08 -0.05 -20.23 16 8 N -0.70 -16.51 5.07 -466.70 -2.36 -18.87 16 9 C 0.14 4.09 4.65 86.38 0.40 4.50 16 10 C 0.02 0.70 1.91 44.92 0.09 0.78 16 11 H 0.06 2.59 5.63 -2.39 -0.01 2.58 16 12 C 0.08 1.94 6.20 72.01 0.45 2.38 16 13 O -0.40 -11.34 10.83 -148.98 -1.61 -12.95 16 14 C 0.07 1.66 7.01 72.02 0.50 2.16 16 15 C 0.00 -0.08 5.25 86.32 0.45 0.37 16 16 N -0.48 -13.93 4.20 -874.56 -3.67 -17.60 16 17 C 0.05 1.65 5.56 85.56 0.48 2.13 16 18 C 0.41 18.75 7.15 87.66 0.63 19.38 16 19 O -0.62 -32.18 11.16 -3.06 -0.03 -32.21 16 20 N -0.57 -29.09 5.29 -306.98 -1.62 -30.71 16 21 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -50.01 13.05 21.66 0.28 -49.72 16 25 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 1.84 6.60 -2.39 -0.02 1.83 16 33 H 0.06 1.54 7.78 -2.39 -0.02 1.52 16 34 H 0.16 1.59 7.99 -2.91 -0.02 1.57 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 37 H 0.07 0.73 6.53 -2.39 -0.02 0.71 16 38 H 0.42 7.88 5.31 -92.71 -0.49 7.39 16 39 H 0.04 1.54 6.63 -2.39 -0.02 1.52 16 40 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.08 1.47 7.09 -2.39 -0.02 1.45 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.04 1.69 5.53 -2.39 -0.01 1.67 16 46 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.10 3.26 6.15 -2.39 -0.01 3.24 16 48 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.39 19.53 7.90 -92.71 -0.73 18.80 16 50 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -71.43 391.69 -0.71 -72.14 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -0.26 Total: 45.32 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 6.59 Total: 19.41 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -7.38 Total: -116.91 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -1.70 Total: -65.40 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -71.43 -0.71 -72.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326618535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.943 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.26 seconds