Wall clock time and date at job start Sat Apr 11 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47417 * 2 1 4 4 C 1.32993 * 120.00038 * 125.45757 * 3 2 1 5 5 C 1.50696 * 119.99985 * 356.45859 * 4 3 2 6 6 C 1.47103 * 119.99860 * 176.45115 * 4 3 2 7 7 O 1.21615 * 120.00032 * 0.02562 * 6 4 3 8 8 N 1.34775 * 120.00302 * 180.02562 * 6 4 3 9 9 C 1.46495 * 120.00391 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.46984 * 184.98977 * 9 8 6 11 11 H 1.09012 * 109.50386 * 185.81114 * 10 9 8 12 12 C 1.53092 * 109.50715 * 65.68534 * 10 9 8 13 13 O 1.43019 * 109.25825 * 183.21426 * 12 10 9 14 14 C 1.43014 * 113.73833 * 58.66838 * 13 12 10 15 15 C 1.53099 * 109.25619 * 301.32763 * 14 13 12 16 16 N 1.47009 * 109.50949 * 305.89723 * 10 9 8 17 17 C 1.46897 * 110.99940 * 302.32805 * 16 10 9 18 18 C 1.50700 * 109.46983 * 163.68305 * 17 16 10 19 19 O 1.21290 * 120.00128 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00147 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00114 * 179.72614 * 20 18 17 22 22 H 1.08000 * 120.00404 * 0.28178 * 21 20 18 23 23 C 1.38953 * 120.00023 * 180.27694 * 21 20 18 24 24 N 1.31412 * 120.00124 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47145 * 60.00170 * 25 23 21 27 27 H 1.48507 * 109.46736 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47256 * 299.99677 * 25 23 21 29 29 H 1.09000 * 109.47632 * 300.00480 * 1 2 3 30 30 H 1.09000 * 109.47263 * 59.99911 * 1 2 3 31 31 H 1.08999 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47026 * 239.99926 * 2 1 3 33 33 H 1.09004 * 109.46796 * 119.99913 * 2 1 3 34 34 H 1.08005 * 119.99574 * 305.46236 * 3 2 1 35 35 H 1.09002 * 109.46539 * 275.12730 * 5 4 3 36 36 H 1.08993 * 109.47796 * 35.12909 * 5 4 3 37 37 H 1.09003 * 109.47177 * 155.13379 * 5 4 3 38 38 H 0.97000 * 119.99602 * 0.02562 * 8 6 4 39 39 H 1.09003 * 109.46987 * 64.98495 * 9 8 6 40 40 H 1.09004 * 109.46904 * 304.99165 * 9 8 6 41 41 H 1.08996 * 109.50907 * 303.14646 * 12 10 9 42 42 H 1.09001 * 109.51138 * 63.28204 * 12 10 9 43 43 H 1.09000 * 109.50693 * 61.26653 * 14 13 12 44 44 H 1.09002 * 109.50707 * 181.35376 * 14 13 12 45 45 H 1.08998 * 109.50891 * 296.91277 * 15 14 13 46 46 H 1.09000 * 109.50412 * 176.78187 * 15 14 13 47 47 H 1.09003 * 109.47446 * 43.68878 * 17 16 10 48 48 H 1.08994 * 109.47619 * 283.68562 * 17 16 10 49 49 H 0.97001 * 119.99944 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8839 1.8250 0.9382 5 6 3.2846 0.8864 2.0469 6 6 3.4349 3.1882 0.8934 7 8 3.1112 3.9458 -0.0013 8 7 4.2983 3.5977 1.8438 9 6 4.8465 4.9555 1.7995 10 6 5.8859 5.1223 2.9097 11 1 6.2188 6.1598 2.9438 12 6 7.0827 4.2094 2.6308 13 8 8.0166 4.3132 3.7091 14 6 7.4672 3.9632 4.9822 15 6 6.2742 4.8737 5.2849 16 7 5.2873 4.7561 4.2016 17 6 4.0987 5.5727 4.4814 18 6 3.2920 4.9263 5.5779 19 8 3.6703 3.8878 6.0776 20 7 2.1507 5.5026 6.0042 21 6 1.4139 4.9117 6.9979 22 1 1.7503 3.9866 7.4423 23 6 0.2342 5.5029 7.4334 24 7 -0.1755 6.6283 6.8924 25 14 -0.7693 4.6980 8.7878 26 1 0.0549 4.5928 10.0187 27 1 -1.9732 5.5213 9.0677 28 1 -1.1872 3.3406 8.3543 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.7007 2.1108 -0.7619 35 1 2.5438 0.9301 2.8453 36 1 3.3415 -0.1307 1.6593 37 1 4.2583 1.1811 2.4384 38 1 4.5567 2.9934 2.5571 39 1 4.0421 5.6770 1.9433 40 1 5.3182 5.1255 0.8316 41 1 6.7413 3.1780 2.5432 42 1 7.5644 4.5141 1.7017 43 1 7.1368 2.9246 4.9630 44 1 8.2269 4.0892 5.7536 45 1 6.6140 5.9069 5.3573 46 1 5.8171 4.5734 6.2278 47 1 3.4904 5.6498 3.5801 48 1 4.4083 6.5689 4.7971 49 1 1.8483 6.3333 5.6049 50 1 -0.9988 7.0412 7.1966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326618538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:04 Heat of formation + Delta-G solvation = -96.561221 kcal Electronic energy + Delta-G solvation = -30935.834501 eV Core-core repulsion = 26770.570601 eV Total energy + Delta-G solvation = -4165.263900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -40.32641 -39.33783 -38.01203 -36.34361 -35.80791 -34.44712 -33.75861 -32.15407 -31.27913 -30.99410 -29.05766 -27.09758 -26.74322 -25.57169 -24.19423 -23.81264 -22.55323 -21.26784 -19.89329 -19.20180 -18.58744 -17.90851 -17.13086 -16.74139 -16.38793 -15.94658 -15.85081 -15.20347 -15.03856 -14.73497 -14.69570 -14.43838 -14.24037 -14.10567 -13.86639 -13.70548 -13.44931 -13.35401 -13.12737 -12.69433 -12.64570 -12.28344 -12.25140 -12.01743 -11.83716 -11.64950 -11.55147 -11.40726 -11.35543 -11.14990 -10.94219 -10.86442 -10.51595 -10.47035 -10.24352 -9.79500 -9.71112 -9.50451 -9.10935 -8.82664 -8.56989 -8.06532 -7.97592 -6.43933 -3.85129 1.40056 3.17282 3.23231 3.24119 3.27837 3.40570 3.71871 3.83598 3.87368 4.18204 4.60644 4.65140 4.71590 4.84224 4.95343 4.96675 5.02642 5.12227 5.14962 5.18882 5.20675 5.29991 5.38366 5.39806 5.48050 5.56623 5.58982 5.65180 5.67568 5.73670 5.74730 5.75794 5.84939 5.91823 5.94922 6.02696 6.05628 6.11154 6.22215 6.42990 6.50286 6.53907 7.02762 7.03680 7.17198 7.52061 7.68497 8.02523 8.35139 8.58242 9.14979 9.51329 10.02372 10.73623 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006718 B = 0.004318 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4166.706987 B = 6482.762548 C = 9478.754038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.077 4.077 4 C -0.180 4.180 5 C -0.119 4.119 6 C 0.553 3.447 7 O -0.554 6.554 8 N -0.710 5.710 9 C 0.127 3.873 10 C 0.031 3.969 11 H 0.065 0.935 12 C 0.073 3.927 13 O -0.387 6.387 14 C 0.065 3.935 15 C 0.022 3.978 16 N -0.507 5.507 17 C 0.038 3.962 18 C 0.446 3.554 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.051 0.949 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 -7.527 -11.503 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.096 4.096 4 C -0.183 4.183 5 C -0.176 4.176 6 C 0.341 3.659 7 O -0.434 6.434 8 N -0.364 5.364 9 C 0.002 3.998 10 C -0.078 4.078 11 H 0.083 0.917 12 C -0.004 4.004 13 O -0.306 6.306 14 C -0.012 4.012 15 C -0.106 4.106 16 N -0.233 5.233 17 C -0.093 4.093 18 C 0.231 3.769 19 O -0.463 6.463 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.224 0.776 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.603 -7.983 -11.763 17.156 hybrid contribution -0.807 0.947 0.926 1.551 sum 8.796 -7.036 -10.837 15.631 Atomic orbital electron populations 1.21701 0.94529 1.01871 1.02511 1.20878 0.96680 0.93683 1.03257 1.23529 0.92689 0.97002 0.96423 1.21426 1.02421 0.94693 0.99777 1.20869 1.02095 0.98002 0.96627 1.18390 0.78623 0.87394 0.81454 1.90758 1.60480 1.55993 1.36208 1.45839 1.46240 1.15195 1.29108 1.21347 0.96010 0.84722 0.97715 1.22660 0.94993 0.99479 0.90699 0.91719 1.22630 0.88706 0.98868 0.90212 1.87959 1.37012 1.89361 1.16246 1.22703 0.95038 0.98534 0.84925 1.22858 0.92583 0.98304 0.96837 1.61769 1.05830 1.54864 1.00794 1.21999 0.92444 0.94744 1.00080 1.19626 0.83607 0.87308 0.86375 1.90488 1.71064 1.24629 1.60102 1.41857 1.20104 1.23758 1.34207 1.19618 1.02726 1.07793 1.12773 0.87984 1.25258 0.97523 0.96075 0.98983 1.69603 1.23879 1.17874 1.42816 0.85935 0.78760 0.78889 0.80728 1.19925 1.20968 1.19902 0.92182 0.92491 0.92329 0.90399 0.90231 0.85752 0.90364 0.90915 0.91806 0.74900 0.90991 0.90522 0.92322 0.88519 0.91981 0.88589 0.94625 0.87493 0.88978 0.93137 0.77566 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.15 0.37 -0.92 16 2 C -0.11 -0.96 6.12 -27.89 -0.17 -1.13 16 3 C -0.08 -0.90 9.09 -36.13 -0.33 -1.22 16 4 C -0.18 -2.32 6.00 -102.85 -0.62 -2.94 16 5 C -0.12 -1.31 8.94 36.00 0.32 -0.99 16 6 C 0.55 8.37 7.75 -12.67 -0.10 8.27 16 7 O -0.55 -10.01 16.22 5.26 0.09 -9.92 16 8 N -0.71 -9.63 4.99 -61.49 -0.31 -9.94 16 9 C 0.13 1.59 4.73 -4.05 -0.02 1.57 16 10 C 0.03 0.38 2.25 -67.61 -0.15 0.22 16 11 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 12 C 0.07 0.82 6.21 37.21 0.23 1.05 16 13 O -0.39 -4.94 10.83 -35.23 -0.38 -5.32 16 14 C 0.06 0.81 7.01 37.21 0.26 1.07 16 15 C 0.02 0.32 5.31 -3.71 -0.02 0.30 16 16 N -0.51 -7.56 3.49 -227.78 -0.79 -8.35 16 17 C 0.04 0.65 5.31 -4.98 -0.03 0.63 16 18 C 0.45 10.01 7.51 -10.98 -0.08 9.93 16 19 O -0.58 -14.50 14.46 5.55 0.08 -14.42 16 20 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 25 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.67 5.46 -51.93 -0.28 0.38 16 34 H 0.12 1.56 7.50 -52.48 -0.39 1.17 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.64 6.22 -51.93 -0.32 0.32 16 37 H 0.06 0.68 6.46 -51.93 -0.34 0.34 16 38 H 0.41 5.55 5.42 -40.82 -0.22 5.33 16 39 H 0.07 0.99 6.37 -51.93 -0.33 0.66 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.65 7.28 -51.93 -0.38 0.27 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.11 1.86 6.46 -51.93 -0.34 1.52 16 47 H 0.09 1.52 5.64 -51.93 -0.29 1.23 16 48 H 0.05 0.81 8.04 -51.93 -0.42 0.39 16 49 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -31.75 398.24 -8.04 -39.80 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -7.79 Total: 15.97 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.57 Total: 8.06 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.43 Total: -55.94 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.22 Total: -29.67 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.75 -8.04 -39.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326618538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.766 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.93 seconds