Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47417 * 2 1 4 4 C 1.32993 * 120.00038 * 125.45757 * 3 2 1 5 5 C 1.50696 * 119.99985 * 356.45859 * 4 3 2 6 6 C 1.47103 * 119.99860 * 176.45115 * 4 3 2 7 7 O 1.21615 * 120.00032 * 0.02562 * 6 4 3 8 8 N 1.34775 * 120.00302 * 180.02562 * 6 4 3 9 9 C 1.46495 * 120.00391 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.46984 * 184.98977 * 9 8 6 11 11 H 1.09012 * 109.50386 * 185.81114 * 10 9 8 12 12 C 1.53092 * 109.50715 * 65.68534 * 10 9 8 13 13 O 1.43019 * 109.25825 * 183.21426 * 12 10 9 14 14 C 1.43014 * 113.73833 * 58.66838 * 13 12 10 15 15 C 1.53099 * 109.25619 * 301.32763 * 14 13 12 16 16 N 1.47009 * 109.50949 * 305.89723 * 10 9 8 17 17 C 1.46897 * 110.99940 * 302.32805 * 16 10 9 18 18 C 1.50700 * 109.46983 * 163.68305 * 17 16 10 19 19 O 1.21290 * 120.00128 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00147 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00114 * 179.72614 * 20 18 17 22 22 H 1.08000 * 120.00404 * 0.28178 * 21 20 18 23 23 C 1.38953 * 120.00023 * 180.27694 * 21 20 18 24 24 N 1.31412 * 120.00124 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47145 * 60.00170 * 25 23 21 27 27 H 1.48507 * 109.46736 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47256 * 299.99677 * 25 23 21 29 29 H 1.09000 * 109.47632 * 300.00480 * 1 2 3 30 30 H 1.09000 * 109.47263 * 59.99911 * 1 2 3 31 31 H 1.08999 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47026 * 239.99926 * 2 1 3 33 33 H 1.09004 * 109.46796 * 119.99913 * 2 1 3 34 34 H 1.08005 * 119.99574 * 305.46236 * 3 2 1 35 35 H 1.09002 * 109.46539 * 275.12730 * 5 4 3 36 36 H 1.08993 * 109.47796 * 35.12909 * 5 4 3 37 37 H 1.09003 * 109.47177 * 155.13379 * 5 4 3 38 38 H 0.97000 * 119.99602 * 0.02562 * 8 6 4 39 39 H 1.09003 * 109.46987 * 64.98495 * 9 8 6 40 40 H 1.09004 * 109.46904 * 304.99165 * 9 8 6 41 41 H 1.08996 * 109.50907 * 303.14646 * 12 10 9 42 42 H 1.09001 * 109.51138 * 63.28204 * 12 10 9 43 43 H 1.09000 * 109.50693 * 61.26653 * 14 13 12 44 44 H 1.09002 * 109.50707 * 181.35376 * 14 13 12 45 45 H 1.08998 * 109.50891 * 296.91277 * 15 14 13 46 46 H 1.09000 * 109.50412 * 176.78187 * 15 14 13 47 47 H 1.09003 * 109.47446 * 43.68878 * 17 16 10 48 48 H 1.08994 * 109.47619 * 283.68562 * 17 16 10 49 49 H 0.97001 * 119.99944 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8839 1.8250 0.9382 5 6 3.2846 0.8864 2.0469 6 6 3.4349 3.1882 0.8934 7 8 3.1112 3.9458 -0.0013 8 7 4.2983 3.5977 1.8438 9 6 4.8465 4.9555 1.7995 10 6 5.8859 5.1223 2.9097 11 1 6.2188 6.1598 2.9438 12 6 7.0827 4.2094 2.6308 13 8 8.0166 4.3132 3.7091 14 6 7.4672 3.9632 4.9822 15 6 6.2742 4.8737 5.2849 16 7 5.2873 4.7561 4.2016 17 6 4.0987 5.5727 4.4814 18 6 3.2920 4.9263 5.5779 19 8 3.6703 3.8878 6.0776 20 7 2.1507 5.5026 6.0042 21 6 1.4139 4.9117 6.9979 22 1 1.7503 3.9866 7.4423 23 6 0.2342 5.5029 7.4334 24 7 -0.1755 6.6283 6.8924 25 14 -0.7693 4.6980 8.7878 26 1 0.0549 4.5928 10.0187 27 1 -1.9732 5.5213 9.0677 28 1 -1.1872 3.3406 8.3543 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.7007 2.1108 -0.7619 35 1 2.5438 0.9301 2.8453 36 1 3.3415 -0.1307 1.6593 37 1 4.2583 1.1811 2.4384 38 1 4.5567 2.9934 2.5571 39 1 4.0421 5.6770 1.9433 40 1 5.3182 5.1255 0.8316 41 1 6.7413 3.1780 2.5432 42 1 7.5644 4.5141 1.7017 43 1 7.1368 2.9246 4.9630 44 1 8.2269 4.0892 5.7536 45 1 6.6140 5.9069 5.3573 46 1 5.8171 4.5734 6.2278 47 1 3.4904 5.6498 3.5801 48 1 4.4083 6.5689 4.7971 49 1 1.8483 6.3333 5.6049 50 1 -0.9988 7.0412 7.1966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326618538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -119.582079 kcal Electronic energy + Delta-G solvation = -30936.832760 eV Core-core repulsion = 26770.570601 eV Total energy + Delta-G solvation = -4166.262159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -41.47922 -40.54081 -39.68105 -37.31993 -36.91419 -36.02038 -35.35319 -33.26416 -33.07689 -31.95570 -30.40034 -28.05706 -27.80897 -27.13733 -25.36702 -25.08981 -23.59116 -22.25973 -21.25069 -20.72768 -19.87392 -19.59622 -18.17762 -18.01294 -17.51965 -17.31878 -17.03422 -16.56684 -16.33448 -16.12743 -15.81571 -15.79305 -15.56955 -15.23599 -15.04530 -14.88080 -14.71301 -14.66506 -14.11668 -13.92515 -13.81233 -13.50159 -13.46453 -13.11301 -13.03767 -12.99722 -12.82575 -12.68128 -12.42929 -12.40257 -12.19832 -12.14084 -12.13625 -11.69346 -11.54908 -11.43184 -10.95467 -10.80634 -10.26129 -10.17636 -9.99778 -9.83454 -9.37971 -8.45744 -5.94310 0.38687 1.39138 1.40902 1.51619 2.05580 2.13455 2.26793 2.31484 2.58962 2.86978 3.20714 3.32109 3.63099 3.68607 3.76676 3.94313 3.94633 4.11921 4.16654 4.22054 4.25202 4.28428 4.32771 4.42415 4.43907 4.46938 4.56114 4.63489 4.69663 4.72654 4.74289 4.80920 4.84399 4.91278 4.99423 5.04004 5.05479 5.13118 5.33650 5.39352 5.41215 5.56267 5.59953 5.73878 5.93439 6.04041 6.14329 6.55667 6.60027 7.13291 7.20534 7.56883 8.11485 8.71584 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006718 B = 0.004318 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4166.706987 B = 6482.762548 C = 9478.754038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.065 4.065 4 C -0.203 4.203 5 C -0.112 4.112 6 C 0.545 3.455 7 O -0.591 6.591 8 N -0.705 5.705 9 C 0.126 3.874 10 C 0.040 3.960 11 H 0.078 0.922 12 C 0.073 3.927 13 O -0.391 6.391 14 C 0.072 3.928 15 C 0.024 3.976 16 N -0.516 5.516 17 C 0.052 3.948 18 C 0.448 3.552 19 O -0.605 6.605 20 N -0.577 5.577 21 C -0.328 4.328 22 H 0.082 0.918 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.271 1.271 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.413 0.587 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.058 0.942 44 H 0.116 0.884 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.067 0.933 49 H 0.392 0.608 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.522 -8.429 -12.142 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.085 4.085 4 C -0.206 4.206 5 C -0.169 4.169 6 C 0.335 3.665 7 O -0.475 6.475 8 N -0.357 5.357 9 C 0.002 3.998 10 C -0.069 4.069 11 H 0.095 0.905 12 C -0.004 4.004 13 O -0.310 6.310 14 C -0.005 4.005 15 C -0.104 4.104 16 N -0.242 5.242 17 C -0.079 4.079 18 C 0.235 3.765 19 O -0.490 6.490 20 N -0.214 5.214 21 C -0.458 4.458 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.565 5.565 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.140 0.860 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.117 0.883 48 H 0.084 0.916 49 H 0.225 0.775 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.477 -8.883 -12.399 18.504 hybrid contribution -1.023 1.213 1.053 1.905 sum 9.454 -7.670 -11.346 16.641 Atomic orbital electron populations 1.21710 0.94337 1.02843 1.01763 1.20947 0.96708 0.91817 1.04673 1.23760 0.91354 0.98296 0.95115 1.21505 1.03753 0.94121 1.01183 1.20833 1.01494 0.98994 0.95562 1.18824 0.78470 0.88100 0.81084 1.90729 1.61892 1.57175 1.37660 1.45854 1.45704 1.15534 1.28592 1.21407 0.95788 0.83906 0.98685 1.22689 0.95004 1.00543 0.88670 0.90453 1.22775 0.88158 0.98713 0.90738 1.87966 1.37332 1.89299 1.16379 1.22678 0.94622 0.97602 0.85617 1.22795 0.92961 0.99231 0.95394 1.61711 1.05568 1.54779 1.02185 1.21788 0.92911 0.95072 0.98086 1.20541 0.82883 0.86673 0.86448 1.90465 1.71535 1.25907 1.61130 1.41947 1.20960 1.24065 1.34462 1.19613 1.04023 1.07852 1.14269 0.89964 1.26029 0.98011 0.96493 1.00843 1.69678 1.24308 1.18695 1.43801 0.85014 0.77455 0.78059 0.77986 1.19523 1.19838 1.19669 0.93876 0.92338 0.90507 0.88215 0.89417 0.87057 0.91935 0.88394 0.91701 0.74796 0.92264 0.88987 0.92249 0.85959 0.92411 0.86580 0.93873 0.90668 0.88259 0.91556 0.77468 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.89 71.98 0.71 -1.67 16 2 C -0.10 -1.66 6.12 29.85 0.18 -1.48 16 3 C -0.07 -1.49 9.09 24.52 0.22 -1.26 16 4 C -0.20 -5.16 6.00 -18.70 -0.11 -5.27 16 5 C -0.11 -2.38 8.94 71.23 0.64 -1.74 16 6 C 0.55 16.57 7.75 86.57 0.67 17.24 16 7 O -0.59 -21.65 16.22 -4.08 -0.07 -21.71 16 8 N -0.70 -18.78 4.99 -466.72 -2.33 -21.11 16 9 C 0.13 3.03 4.73 86.38 0.41 3.44 16 10 C 0.04 0.89 2.25 44.92 0.10 0.99 16 11 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 12 C 0.07 1.44 6.21 72.01 0.45 1.89 16 13 O -0.39 -8.98 10.83 -148.98 -1.61 -10.60 16 14 C 0.07 1.66 7.01 72.02 0.50 2.17 16 15 C 0.02 0.68 5.31 86.31 0.46 1.14 16 16 N -0.52 -14.96 3.49 -874.57 -3.05 -18.01 16 17 C 0.05 1.78 5.31 85.56 0.45 2.23 16 18 C 0.45 20.49 7.51 87.66 0.66 21.15 16 19 O -0.61 -31.08 14.46 -3.06 -0.04 -31.12 16 20 N -0.58 -29.31 5.29 -306.98 -1.62 -30.94 16 21 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 25 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.27 5.46 -2.39 -0.01 1.26 16 34 H 0.11 2.82 7.50 -2.91 -0.02 2.80 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.53 6.22 -2.39 -0.01 1.51 16 37 H 0.06 1.33 6.46 -2.39 -0.02 1.31 16 38 H 0.41 10.91 5.42 -92.71 -0.50 10.41 16 39 H 0.06 1.60 6.37 -2.39 -0.02 1.58 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.19 7.28 -2.39 -0.02 1.17 16 42 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 2.64 6.46 -2.39 -0.02 2.63 16 47 H 0.10 3.26 5.64 -2.39 -0.01 3.25 16 48 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 49 H 0.39 19.43 7.90 -92.71 -0.73 18.70 16 50 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -69.48 398.24 -0.06 -69.54 By element: Atomic # 1 Polarization: 48.46 SS G_CDS: -0.26 Total: 48.20 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 6.62 Total: 21.02 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -6.72 Total: -120.07 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -1.72 Total: -63.43 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.48 -0.06 -69.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326618538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.047 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds